Wall clock time and date at job start Tue Mar 31 2020 19:36:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86800 * 119.99649 * 2 1 4 4 H 1.48498 * 109.46857 * 179.97438 * 3 2 1 5 5 H 1.48500 * 109.47188 * 299.99695 * 3 2 1 6 6 H 1.48497 * 109.47115 * 59.99817 * 3 2 1 7 7 C 1.37875 * 119.99984 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99647 * 180.02562 * 7 2 1 9 9 C 1.50702 * 120.00427 * 0.02562 * 7 2 1 10 10 N 1.46892 * 109.47067 * 179.97438 * 9 7 2 11 11 C 1.46903 * 110.99782 * 170.00294 * 10 9 7 12 12 C 1.53240 * 109.33959 * 187.25815 * 11 10 9 13 13 N 1.47082 * 108.51749 * 306.16187 * 12 11 10 14 14 C 1.34777 * 120.88357 * 231.18595 * 13 12 11 15 15 O 1.21593 * 119.99811 * 183.75521 * 14 13 12 16 16 C 1.47520 * 120.00055 * 3.75946 * 14 13 12 17 17 C 1.36596 * 125.77284 * 173.27963 * 16 14 13 18 18 N 1.34819 * 106.84169 * 179.97438 * 17 16 14 19 19 C 1.46493 * 126.59742 * 180.02562 * 18 17 16 20 20 C 1.52994 * 109.47507 * 124.99724 * 19 18 17 21 21 C 1.52994 * 109.47560 * 180.02562 * 20 19 18 22 22 C 1.52999 * 109.47782 * 180.02562 * 21 20 19 23 23 N 1.46897 * 109.47475 * 179.97438 * 22 21 20 24 24 N 1.40215 * 106.80658 * 0.02562 * 18 17 16 25 25 N 1.28760 * 108.37004 * 359.97438 * 24 18 17 26 26 C 1.47077 * 118.23256 * 51.46584 * 13 12 11 27 27 C 1.46896 * 111.00525 * 294.30065 * 10 9 7 28 28 H 0.96997 * 120.00408 * 0.02562 * 1 2 3 29 29 H 1.09000 * 109.46644 * 59.99862 * 9 7 2 30 30 H 1.08998 * 109.47050 * 300.00460 * 9 7 2 31 31 H 1.08992 * 109.49818 * 67.29211 * 11 10 9 32 32 H 1.09006 * 109.51100 * 307.22573 * 11 10 9 33 33 H 1.09002 * 109.62772 * 186.45683 * 12 11 10 34 34 H 1.08995 * 109.63431 * 65.87760 * 12 11 10 35 35 H 1.07995 * 126.57902 * 359.97438 * 17 16 14 36 36 H 1.09003 * 109.47168 * 245.00308 * 19 18 17 37 37 H 1.09005 * 109.46721 * 4.99828 * 19 18 17 38 38 H 1.09003 * 109.47384 * 300.00452 * 20 19 18 39 39 H 1.09005 * 109.47045 * 60.00303 * 20 19 18 40 40 H 1.09008 * 109.47237 * 300.00135 * 21 20 19 41 41 H 1.09001 * 109.47410 * 59.99970 * 21 20 19 42 42 H 1.09003 * 109.47096 * 300.00134 * 22 21 20 43 43 H 1.09001 * 109.46849 * 59.99410 * 22 21 20 44 44 H 1.00893 * 111.00089 * 56.04549 * 23 22 21 45 45 H 1.00901 * 111.00070 * 180.02562 * 23 22 21 46 46 H 1.08998 * 109.63687 * 68.25104 * 26 13 12 47 47 H 1.09003 * 109.62505 * 188.82938 * 26 13 12 48 48 H 1.09003 * 109.49463 * 292.71245 * 27 10 9 49 49 H 1.09007 * 109.48931 * 52.78421 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7090 1.3465 0.0006 5 1 1.8903 2.3964 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 1.5213 -4.8935 0.2386 12 6 2.5639 -6.0031 0.4115 13 7 3.4617 -5.9862 -0.7534 14 6 3.7121 -7.1123 -1.4502 15 8 4.5094 -7.0946 -2.3682 16 6 3.0190 -8.3663 -1.0994 17 6 3.0829 -9.5371 -1.8002 18 7 2.3109 -10.4272 -1.1450 19 6 2.0725 -11.8221 -1.5237 20 6 2.4316 -12.7374 -0.3516 21 6 2.1833 -14.1942 -0.7473 22 6 2.5418 -15.1096 0.4251 23 7 2.3028 -16.5083 0.0452 24 7 1.7799 -9.7609 -0.0314 25 7 2.2179 -8.5501 -0.0359 26 6 4.0839 -4.7089 -1.1338 27 6 2.9769 -3.6491 -1.2493 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8902 31 1 0.8798 -5.1264 -0.6111 32 1 0.9158 -4.8194 1.1420 33 1 2.0634 -6.9694 0.4740 34 1 3.1395 -5.8265 1.3201 35 1 3.6442 -9.7155 -2.7054 36 1 1.0212 -11.9546 -1.7795 37 1 2.6907 -12.0753 -2.3851 38 1 3.4829 -12.6049 -0.0959 39 1 1.8135 -12.4841 0.5098 40 1 1.1321 -14.3272 -1.0033 41 1 2.8017 -14.4473 -1.6085 42 1 3.5929 -14.9769 0.6814 43 1 1.9231 -14.8564 1.2860 44 1 2.8158 -16.7490 -0.7895 45 1 2.5319 -17.1332 0.8036 46 1 4.8028 -4.4101 -0.3709 47 1 4.5887 -4.8191 -2.0935 48 1 2.3150 -3.8992 -2.0785 49 1 3.4272 -2.6721 -1.4250 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001580052228.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:25 Heat of formation + Delta-G solvation = 51.651987 kcal Electronic energy + Delta-G solvation = -28518.923997 eV Core-core repulsion = 24517.409996 eV Total energy + Delta-G solvation = -4001.514001 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -43.33984 -40.93678 -38.92426 -37.71340 -36.12502 -35.63903 -34.37950 -33.00920 -32.52673 -31.56355 -30.02019 -28.55774 -27.33466 -25.24001 -24.92970 -24.15703 -23.54439 -22.70580 -22.22936 -21.78984 -20.30362 -18.67531 -18.40020 -17.60220 -17.36097 -17.06198 -16.89397 -16.65165 -16.30193 -16.09676 -16.02210 -15.74500 -15.39135 -15.34010 -15.28566 -14.98143 -14.54367 -14.30783 -14.06651 -13.83134 -13.63880 -13.32639 -13.19213 -12.81147 -12.72124 -12.66941 -12.58696 -12.44483 -12.33286 -12.29555 -12.18951 -11.83600 -11.64377 -11.52715 -11.35002 -11.30649 -10.85771 -10.61274 -10.39701 -9.76185 -9.62995 -9.05552 -8.19960 -6.30219 0.13546 0.54522 1.07430 1.42657 1.43305 1.57152 1.89085 2.16556 2.41446 3.00963 3.12694 3.23385 3.29711 3.58499 3.67713 3.85708 3.93532 3.98580 4.03518 4.06205 4.21473 4.24111 4.30160 4.37370 4.39292 4.43517 4.45856 4.51196 4.63578 4.72693 4.80971 4.85283 4.93411 4.94389 5.01430 5.13447 5.21046 5.23458 5.27493 5.31950 5.45037 5.55380 5.65096 6.03103 6.19976 6.22036 6.35902 6.57533 6.57658 6.79748 6.85584 7.05447 7.39628 8.91594 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.032021 B = 0.001817 C = 0.001756 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 874.210754 B =15404.948083 C =15938.807521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.261 1.261 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.522 4.522 8 H 0.067 0.933 9 C 0.207 3.793 10 N -0.539 5.539 11 C 0.044 3.956 12 C 0.091 3.909 13 N -0.598 5.598 14 C 0.601 3.399 15 O -0.569 6.569 16 C -0.122 4.122 17 C 0.116 3.884 18 N -0.344 5.344 19 C 0.112 3.888 20 C -0.125 4.125 21 C -0.106 4.106 22 C 0.057 3.943 23 N -0.863 5.863 24 N -0.082 5.082 25 N -0.226 5.226 26 C 0.126 3.874 27 C 0.057 3.943 28 H 0.264 0.736 29 H -0.042 1.042 30 H 0.008 0.992 31 H 0.013 0.987 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.075 0.925 35 H 0.240 0.760 36 H 0.113 0.887 37 H 0.144 0.856 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.029 0.971 43 H 0.063 0.937 44 H 0.348 0.652 45 H 0.349 0.651 46 H 0.083 0.917 47 H 0.097 0.903 48 H 0.011 0.989 49 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.525 -33.196 -4.013 34.274 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.185 1.185 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.560 4.560 8 H 0.085 0.915 9 C 0.081 3.919 10 N -0.264 5.264 11 C -0.085 4.085 12 C -0.032 4.032 13 N -0.329 5.329 14 C 0.388 3.612 15 O -0.449 6.449 16 C -0.262 4.262 17 C -0.042 4.042 18 N -0.129 5.129 19 C -0.006 4.006 20 C -0.164 4.164 21 C -0.145 4.145 22 C -0.074 4.074 23 N -0.394 5.394 24 N -0.061 5.061 25 N -0.098 5.098 26 C 0.004 3.996 27 C -0.072 4.072 28 H 0.073 0.927 29 H -0.024 1.024 30 H 0.026 0.974 31 H 0.031 0.969 32 H 0.100 0.900 33 H 0.166 0.834 34 H 0.093 0.907 35 H 0.257 0.743 36 H 0.131 0.869 37 H 0.161 0.839 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.100 0.900 42 H 0.047 0.953 43 H 0.082 0.918 44 H 0.161 0.839 45 H 0.162 0.838 46 H 0.101 0.899 47 H 0.115 0.885 48 H 0.029 0.971 49 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 6.439 -32.990 -2.954 33.742 hybrid contribution 0.774 1.139 -1.054 1.734 sum 7.213 -31.851 -4.009 32.903 Atomic orbital electron populations 1.70100 1.07822 1.27837 1.51849 1.25933 0.95725 1.03274 0.94755 0.85297 0.79076 0.78420 0.77596 1.18467 1.20560 1.20491 1.21494 0.93779 0.90812 1.49947 0.91464 1.19394 0.90095 0.88938 0.93460 1.62038 1.27098 1.02942 1.34321 1.22457 0.95841 0.89940 1.00258 1.22886 0.91262 1.02017 0.87046 1.48099 1.46262 1.08174 1.30318 1.17092 0.80812 0.82098 0.81178 1.90746 1.36968 1.85508 1.31688 1.21366 1.08826 0.97160 0.98812 1.23820 0.93739 0.87374 0.99257 1.50805 1.31270 1.12727 1.18071 1.22590 1.06070 0.71891 1.00063 1.21752 1.02571 0.94542 0.97561 1.21403 1.03238 0.91437 0.98383 1.21776 0.98706 0.88699 0.98185 1.58702 1.66550 1.03699 1.10442 1.81930 1.19717 0.99245 1.05250 1.74084 1.08496 1.09377 1.17876 1.21845 0.94642 0.80919 1.02235 1.22372 0.95369 0.99624 0.89882 0.92725 1.02399 0.97409 0.96862 0.89970 0.83393 0.90656 0.74346 0.86866 0.83861 0.91316 0.91563 0.90687 0.89962 0.95278 0.91847 0.83908 0.83850 0.89891 0.88462 0.97055 0.89711 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.11 13.29 21.45 0.28 -56.83 16 2 C 0.00 0.06 5.46 84.65 0.46 0.52 16 3 Si 0.97 44.70 29.54 68.60 2.03 46.72 16 4 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 5 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 6 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 7 C -0.52 -29.91 8.41 25.60 0.22 -29.70 16 8 H 0.07 3.74 7.13 -2.91 -0.02 3.72 16 9 C 0.21 11.39 4.72 85.56 0.40 11.80 16 10 N -0.54 -24.33 4.62 -898.90 -4.15 -28.49 16 11 C 0.04 1.71 5.62 86.38 0.49 2.19 16 12 C 0.09 2.96 6.44 86.35 0.56 3.52 16 13 N -0.60 -19.78 3.00 -820.83 -2.46 -22.24 16 14 C 0.60 18.67 7.70 86.69 0.67 19.34 16 15 O -0.57 -19.29 16.34 -4.01 -0.07 -19.36 16 16 C -0.12 -3.10 6.77 40.82 0.28 -2.83 16 17 C 0.12 1.87 11.28 83.85 0.95 2.82 16 18 N -0.34 -4.94 3.69 -347.12 -1.28 -6.23 16 19 C 0.11 0.54 6.54 86.38 0.56 1.11 16 20 C -0.13 -0.75 5.42 30.59 0.17 -0.58 16 21 C -0.11 -0.42 5.47 30.59 0.17 -0.25 16 22 C 0.06 0.38 6.79 86.30 0.59 0.97 16 23 N -0.86 -5.53 9.62 -186.72 -1.80 -7.32 16 24 N -0.08 -1.86 13.65 37.02 0.51 -1.36 16 25 N -0.23 -6.05 8.66 -50.00 -0.43 -6.48 16 26 C 0.13 4.29 6.62 86.50 0.57 4.86 16 27 C 0.06 2.32 5.47 86.54 0.47 2.79 16 28 H 0.26 15.10 8.31 -92.71 -0.77 14.33 16 29 H -0.04 -2.51 8.12 -2.39 -0.02 -2.53 16 30 H 0.01 0.46 7.97 -2.39 -0.02 0.44 16 31 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 32 H 0.08 3.11 7.99 -2.38 -0.02 3.09 16 33 H 0.15 4.55 3.74 -88.65 -0.33 4.21 16 34 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 35 H 0.24 1.96 8.06 -2.91 -0.02 1.94 16 36 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.14 -0.31 8.08 -2.38 -0.02 -0.33 16 38 H 0.07 0.48 8.14 -2.39 -0.02 0.47 16 39 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 40 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 41 H 0.08 0.08 8.14 -2.39 -0.02 0.06 16 42 H 0.03 0.18 8.14 -2.39 -0.02 0.16 16 43 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 44 H 0.35 1.21 8.99 -89.70 -0.81 0.41 16 45 H 0.35 1.60 9.08 -89.69 -0.81 0.79 16 46 H 0.08 2.70 8.14 -2.39 -0.02 2.68 16 47 H 0.10 3.15 7.08 -2.39 -0.02 3.13 16 48 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.08 3.64 6.67 -2.38 -0.02 3.63 16 Total: -1.00 -76.21 397.22 -1.81 -78.01 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -0.97 Total: 7.02 kcal Atomic # 6 Polarization: 10.01 SS G_CDS: 6.54 Total: 16.55 kcal Atomic # 7 Polarization: -119.60 SS G_CDS: -9.34 Total: -128.94 kcal Atomic # 8 Polarization: -19.29 SS G_CDS: -0.07 Total: -19.36 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.72 kcal Total: -76.21 -1.81 -78.01 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001580052228.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 129.666 kcal (2) G-P(sol) polarization free energy of solvation -76.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.014 kcal (6) G-S(sol) free energy of system = (1) + (5) 51.652 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds