Wall clock time and date at job start Tue Mar 31 2020 19:53:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34783 * 120.00091 * 2 1 4 4 O 1.21589 * 119.99535 * 4.94355 * 3 2 1 5 5 N 1.34768 * 120.00187 * 184.95410 * 3 2 1 6 6 C 1.47087 * 120.88342 * 174.55359 * 5 3 2 7 7 C 1.53239 * 108.52079 * 128.78733 * 6 5 3 8 8 N 1.46907 * 109.36031 * 53.82038 * 7 6 5 9 9 C 1.38582 * 110.99429 * 172.75901 * 8 7 6 10 10 N 1.31214 * 126.47976 * 35.15726 * 9 8 7 11 11 N 1.28524 * 109.86233 * 179.97438 * 10 9 8 12 12 C 1.30293 * 110.05471 * 359.97438 * 11 10 9 13 13 C 1.50694 * 126.34842 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47162 * 244.54194 * 13 12 11 15 15 C 1.53000 * 109.47195 * 4.53709 * 13 12 11 16 16 C 1.50697 * 109.47361 * 124.54267 * 13 12 11 17 17 H 1.08000 * 120.00108 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00199 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99942 * 359.97438 * 18 16 13 20 20 Si 1.86804 * 120.00115 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46825 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47123 * 119.99519 * 20 18 16 23 23 H 1.48497 * 109.46884 * 239.99551 * 20 18 16 24 24 N 1.36458 * 126.46607 * 214.83994 * 9 8 7 25 25 C 1.46500 * 127.13791 * 0.03925 * 24 9 8 26 26 C 1.46898 * 111.26730 * 296.92970 * 8 7 6 27 27 C 1.47077 * 120.88192 * 354.52522 * 5 3 2 28 28 H 1.08992 * 109.47176 * 300.00341 * 1 2 3 29 29 H 1.09001 * 109.46713 * 60.00673 * 1 2 3 30 30 H 1.09002 * 109.46658 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00230 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.62318 * 9.08026 * 6 5 3 33 33 H 1.08993 * 109.62425 * 248.50079 * 6 5 3 34 34 H 1.08997 * 109.48962 * 173.78953 * 7 6 5 35 35 H 1.09004 * 109.49421 * 293.84351 * 7 6 5 36 36 H 1.08999 * 109.47370 * 54.84859 * 14 13 12 37 37 H 1.09004 * 109.47567 * 174.85365 * 14 13 12 38 38 H 1.09005 * 109.46898 * 294.85040 * 14 13 12 39 39 H 1.09000 * 109.47315 * 60.00374 * 15 13 12 40 40 H 1.09003 * 109.46990 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.47538 * 300.00044 * 15 13 12 42 42 H 0.96998 * 119.99711 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.46996 * 95.06948 * 25 24 9 44 44 H 1.08994 * 109.46979 * 215.06724 * 25 24 9 45 45 H 1.08994 * 109.47062 * 335.07101 * 25 24 9 46 46 H 1.08993 * 109.47466 * 303.10454 * 26 8 7 47 47 H 1.09001 * 109.50956 * 183.04841 * 26 8 7 48 48 H 1.08996 * 109.63085 * 350.91935 * 27 5 3 49 49 H 1.09004 * 109.63190 * 111.50126 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5343 2.2182 0.0907 5 7 3.4828 1.1694 -0.1008 6 6 4.2288 2.4313 -0.2224 7 6 5.3417 2.4423 0.8310 8 7 6.1533 1.2254 0.6947 9 6 7.2648 1.2748 1.5210 10 7 7.3262 1.8169 2.7143 11 7 8.5104 1.6811 3.1951 12 6 9.2683 1.0491 2.3444 13 6 10.7204 0.6937 2.5342 14 6 11.5677 1.4435 1.5041 15 6 11.1625 1.0905 3.9441 16 6 10.9026 -0.7908 2.3496 17 1 10.0519 -1.4147 2.1185 18 6 12.1553 -1.3527 2.4769 19 7 13.1912 -0.5931 2.7588 20 14 12.3810 -3.1930 2.2489 21 1 11.0696 -3.8181 1.9411 22 1 13.3232 -3.4410 1.1283 23 1 12.9295 -3.7827 3.4965 24 7 8.5004 0.7634 1.2496 25 6 8.9185 0.0574 0.0359 26 6 5.3550 0.0204 0.9567 27 6 4.2426 -0.0898 -0.0915 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 3.5560 3.2720 -0.0530 33 1 4.6662 2.5035 -1.2180 34 1 5.9728 3.3188 0.6841 35 1 4.8996 2.4751 1.8269 36 1 11.3666 2.5123 1.5768 37 1 12.6242 1.2585 1.6987 38 1 11.3161 1.0937 0.5029 39 1 10.5590 0.5565 4.6780 40 1 12.2130 0.8339 4.0812 41 1 11.0308 2.1643 4.0776 42 1 14.0725 -0.9884 2.8480 43 1 9.3813 0.7633 -0.6538 44 1 9.6368 -0.7197 0.2968 45 1 8.0483 -0.3964 -0.4383 46 1 4.9129 0.0864 1.9507 47 1 5.9956 -0.8598 0.9012 48 1 3.5792 -0.9159 0.1643 49 1 4.6815 -0.2600 -1.0747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646679768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:45 Heat of formation + Delta-G solvation = 78.248534 kcal Electronic energy + Delta-G solvation = -30459.777957 eV Core-core repulsion = 26459.417269 eV Total energy + Delta-G solvation = -4000.360688 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.31182 -40.60116 -38.35298 -35.82218 -34.97385 -34.77796 -33.89548 -31.49748 -31.42943 -29.12491 -27.42755 -26.90530 -25.99489 -25.63746 -25.38026 -23.95631 -22.31700 -21.84841 -20.61022 -19.85434 -19.09690 -18.46413 -16.87527 -16.64629 -16.32191 -15.96230 -15.81910 -15.33991 -15.08458 -14.74462 -14.66109 -14.53933 -14.34297 -13.86972 -13.44309 -13.09652 -12.86219 -12.77008 -12.53439 -12.49138 -12.45137 -11.84391 -11.73807 -11.63337 -11.46736 -11.42407 -11.18969 -10.96722 -10.80021 -10.59825 -10.38366 -10.37453 -10.22765 -9.90182 -9.77069 -9.50097 -9.38766 -9.27228 -8.91671 -8.66151 -8.55567 -7.95955 -6.20170 -4.32548 2.29643 2.44261 2.81921 2.95107 3.14241 3.24237 3.24750 3.56055 3.59094 3.92713 4.23018 4.49659 4.70091 4.71686 4.90097 4.98616 5.05591 5.13087 5.22177 5.25276 5.26970 5.35085 5.46710 5.48645 5.57898 5.65735 5.68410 5.79442 5.98372 6.05243 6.08153 6.12866 6.13639 6.53629 6.60468 6.62439 6.72959 6.77914 6.79746 7.02634 7.18209 7.26764 7.47283 7.51410 7.61219 7.74257 7.85993 7.98813 8.15043 8.31281 8.63721 9.33178 9.50595 10.81232 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020615 B = 0.002792 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.939319 B =10027.424961 C =10773.741826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.753 5.753 3 C 0.708 3.292 4 O -0.589 6.589 5 N -0.631 5.631 6 C 0.135 3.865 7 C 0.059 3.941 8 N -0.453 5.453 9 C 0.301 3.699 10 N -0.320 5.320 11 N -0.314 5.314 12 C 0.251 3.749 13 C 0.144 3.856 14 C -0.128 4.128 15 C -0.117 4.117 16 C -0.516 4.516 17 H 0.056 0.944 18 C 0.074 3.926 19 N -0.876 5.876 20 Si 0.895 3.105 21 H -0.274 1.274 22 H -0.282 1.282 23 H -0.282 1.282 24 N -0.462 5.462 25 C 0.080 3.920 26 C 0.047 3.953 27 C 0.121 3.879 28 H 0.058 0.942 29 H 0.057 0.943 30 H 0.074 0.926 31 H 0.397 0.603 32 H 0.103 0.897 33 H 0.075 0.925 34 H 0.092 0.908 35 H 0.060 0.940 36 H 0.013 0.987 37 H 0.094 0.906 38 H 0.030 0.970 39 H 0.033 0.967 40 H 0.088 0.912 41 H 0.020 0.980 42 H 0.264 0.736 43 H 0.070 0.930 44 H 0.111 0.889 45 H 0.075 0.925 46 H 0.053 0.947 47 H 0.089 0.911 48 H 0.083 0.917 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.189 -2.190 -9.795 19.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.038 4.038 2 N -0.411 5.411 3 C 0.410 3.590 4 O -0.467 6.467 5 N -0.368 5.368 6 C 0.012 3.988 7 C -0.069 4.069 8 N -0.178 5.178 9 C -0.056 4.056 10 N -0.164 5.164 11 N -0.153 5.153 12 C -0.016 4.016 13 C 0.141 3.859 14 C -0.186 4.186 15 C -0.175 4.175 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.130 4.130 19 N -0.513 5.513 20 Si 0.722 3.278 21 H -0.199 1.199 22 H -0.208 1.208 23 H -0.207 1.207 24 N -0.153 5.153 25 C -0.063 4.063 26 C -0.082 4.082 27 C -0.003 4.003 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.093 0.907 31 H 0.232 0.768 32 H 0.121 0.879 33 H 0.094 0.906 34 H 0.111 0.889 35 H 0.078 0.922 36 H 0.032 0.968 37 H 0.112 0.888 38 H 0.049 0.951 39 H 0.052 0.948 40 H 0.107 0.893 41 H 0.039 0.961 42 H 0.074 0.926 43 H 0.089 0.911 44 H 0.129 0.871 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.107 0.893 48 H 0.101 0.899 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -16.759 -0.732 -8.970 19.023 hybrid contribution 0.500 -2.231 -0.593 2.362 sum -16.259 -2.963 -9.563 19.094 Atomic orbital electron populations 1.21395 0.78168 1.01936 1.02299 1.45096 1.07796 1.07278 1.80888 1.15820 0.81333 0.84253 0.77630 1.90920 1.67416 1.30599 1.57750 1.47345 1.04096 1.07938 1.77470 1.21676 0.92243 0.85975 0.98885 1.22435 0.94063 0.91223 0.99207 1.58465 1.05360 1.04133 1.49857 1.22054 0.86648 1.04082 0.92787 1.74427 1.14952 1.21919 1.05125 1.74026 0.97156 1.19371 1.24711 1.26142 0.98190 0.95083 0.82225 1.16943 0.78429 0.95678 0.94856 1.21848 1.04134 0.95364 0.97298 1.21618 1.03504 0.97028 0.95383 1.20880 0.93874 0.90614 1.50095 0.92586 1.24849 0.95719 0.98052 0.94332 1.69822 0.99585 1.34805 1.47125 0.86490 0.78197 0.85043 0.78025 1.19893 1.20803 1.20744 1.46035 1.08517 1.43581 1.17177 1.22130 1.01826 0.98160 0.84216 1.22564 0.94692 0.92718 0.98218 1.21730 0.92769 0.85799 1.00037 0.92295 0.92428 0.90705 0.76789 0.87927 0.90642 0.88938 0.92199 0.96795 0.88776 0.95122 0.94771 0.89310 0.96113 0.92569 0.91111 0.87111 0.90645 0.92892 0.89287 0.89916 0.90031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 0.72 10.71 59.85 0.64 1.37 16 2 N -0.75 -6.26 5.62 -72.07 -0.41 -6.67 16 3 C 0.71 8.47 8.30 -86.92 -0.72 7.75 16 4 O -0.59 -9.33 15.80 5.29 0.08 -9.24 16 5 N -0.63 -6.65 3.01 -178.19 -0.54 -7.19 16 6 C 0.14 1.48 6.61 -3.60 -0.02 1.45 16 7 C 0.06 0.77 5.22 -3.70 -0.02 0.75 16 8 N -0.45 -6.29 4.62 -174.21 -0.80 -7.10 16 9 C 0.30 5.50 6.71 -318.87 -2.14 3.37 16 10 N -0.32 -6.90 11.70 30.32 0.35 -6.55 16 11 N -0.31 -7.44 11.50 32.99 0.38 -7.06 16 12 C 0.25 5.64 6.29 -154.02 -0.97 4.67 16 13 C 0.14 3.36 0.54 -156.81 -0.08 3.27 16 14 C -0.13 -2.83 8.06 37.16 0.30 -2.53 16 15 C -0.12 -2.81 7.76 37.16 0.29 -2.53 16 16 C -0.52 -12.50 6.44 -34.44 -0.22 -12.72 16 17 H 0.06 1.37 6.89 -52.49 -0.36 1.00 16 18 C 0.07 1.79 5.15 -17.82 -0.09 1.70 16 19 N -0.88 -21.95 9.41 55.43 0.52 -21.43 16 20 Si 0.89 19.14 29.54 -169.99 -5.02 14.12 16 21 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 22 H -0.28 -5.98 7.11 56.52 0.40 -5.58 16 23 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 24 N -0.46 -8.82 3.21 -121.46 -0.39 -9.21 16 25 C 0.08 1.23 9.90 59.85 0.59 1.82 16 26 C 0.05 0.54 5.55 -3.70 -0.02 0.52 16 27 C 0.12 0.99 6.53 -3.60 -0.02 0.96 16 28 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 31 H 0.40 2.23 6.37 -40.82 -0.26 1.97 16 32 H 0.10 1.19 7.04 -51.93 -0.37 0.83 16 33 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.09 1.23 8.09 -51.93 -0.42 0.81 16 35 H 0.06 0.89 8.09 -51.93 -0.42 0.47 16 36 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 37 H 0.09 2.23 6.23 -51.93 -0.32 1.91 16 38 H 0.03 0.62 6.90 -51.93 -0.36 0.27 16 39 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.09 2.23 6.07 -51.93 -0.32 1.91 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 42 H 0.26 6.35 8.31 -40.82 -0.34 6.01 16 43 H 0.07 1.01 7.88 -51.93 -0.41 0.60 16 44 H 0.11 1.88 5.68 -51.93 -0.30 1.58 16 45 H 0.07 0.94 8.11 -51.93 -0.42 0.51 16 46 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 47 H 0.09 1.00 8.09 -51.93 -0.42 0.58 16 48 H 0.08 0.46 5.75 -51.93 -0.30 0.16 16 49 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 LS Contribution 382.29 15.07 5.76 5.76 Total: -1.00 -31.72 382.29 -10.16 -41.87 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.61 Total: 2.83 kcal Atomic # 6 Polarization: 12.35 SS G_CDS: -2.49 Total: 9.86 kcal Atomic # 7 Polarization: -64.31 SS G_CDS: -0.88 Total: -65.19 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: 0.08 Total: -9.24 kcal Atomic # 14 Polarization: 19.14 SS G_CDS: -5.02 Total: 14.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -31.72 -10.16 -41.87 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646679768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.122 kcal (2) G-P(sol) polarization free energy of solvation -31.717 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds