Wall clock time and date at job start Tue Mar 31 2020 19:53:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.34783 * 120.00091 * 2 1 4 4 O 1.21589 * 119.99535 * 4.94355 * 3 2 1 5 5 N 1.34768 * 120.00187 * 184.95410 * 3 2 1 6 6 C 1.47087 * 120.88342 * 174.55359 * 5 3 2 7 7 C 1.53239 * 108.52079 * 128.78733 * 6 5 3 8 8 N 1.46907 * 109.36031 * 53.82038 * 7 6 5 9 9 C 1.38582 * 110.99429 * 172.75901 * 8 7 6 10 10 N 1.31214 * 126.47976 * 35.15726 * 9 8 7 11 11 N 1.28524 * 109.86233 * 179.97438 * 10 9 8 12 12 C 1.30293 * 110.05471 * 359.97438 * 11 10 9 13 13 C 1.50694 * 126.34842 * 180.02562 * 12 11 10 14 14 C 1.53002 * 109.47162 * 244.54194 * 13 12 11 15 15 C 1.53000 * 109.47195 * 4.53709 * 13 12 11 16 16 C 1.50697 * 109.47361 * 124.54267 * 13 12 11 17 17 H 1.08000 * 120.00108 * 359.97438 * 16 13 12 18 18 C 1.37880 * 120.00199 * 180.02562 * 16 13 12 19 19 N 1.31519 * 119.99942 * 359.97438 * 18 16 13 20 20 Si 1.86804 * 120.00115 * 179.97438 * 18 16 13 21 21 H 1.48503 * 109.46825 * 359.97438 * 20 18 16 22 22 H 1.48491 * 109.47123 * 119.99519 * 20 18 16 23 23 H 1.48497 * 109.46884 * 239.99551 * 20 18 16 24 24 N 1.36458 * 126.46607 * 214.83994 * 9 8 7 25 25 C 1.46500 * 127.13791 * 0.03925 * 24 9 8 26 26 C 1.46898 * 111.26730 * 296.92970 * 8 7 6 27 27 C 1.47077 * 120.88192 * 354.52522 * 5 3 2 28 28 H 1.08992 * 109.47176 * 300.00341 * 1 2 3 29 29 H 1.09001 * 109.46713 * 60.00673 * 1 2 3 30 30 H 1.09002 * 109.46658 * 180.02562 * 1 2 3 31 31 H 0.96998 * 120.00230 * 179.97438 * 2 1 3 32 32 H 1.08993 * 109.62318 * 9.08026 * 6 5 3 33 33 H 1.08993 * 109.62425 * 248.50079 * 6 5 3 34 34 H 1.08997 * 109.48962 * 173.78953 * 7 6 5 35 35 H 1.09004 * 109.49421 * 293.84351 * 7 6 5 36 36 H 1.08999 * 109.47370 * 54.84859 * 14 13 12 37 37 H 1.09004 * 109.47567 * 174.85365 * 14 13 12 38 38 H 1.09005 * 109.46898 * 294.85040 * 14 13 12 39 39 H 1.09000 * 109.47315 * 60.00374 * 15 13 12 40 40 H 1.09003 * 109.46990 * 180.02562 * 15 13 12 41 41 H 1.09000 * 109.47538 * 300.00044 * 15 13 12 42 42 H 0.96998 * 119.99711 * 180.02562 * 19 18 16 43 43 H 1.09000 * 109.46996 * 95.06948 * 25 24 9 44 44 H 1.08994 * 109.46979 * 215.06724 * 25 24 9 45 45 H 1.08994 * 109.47062 * 335.07101 * 25 24 9 46 46 H 1.08993 * 109.47466 * 303.10454 * 26 8 7 47 47 H 1.09001 * 109.50956 * 183.04841 * 26 8 7 48 48 H 1.08996 * 109.63085 * 350.91935 * 27 5 3 49 49 H 1.09004 * 109.63190 * 111.50126 * 27 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5343 2.2182 0.0907 5 7 3.4828 1.1694 -0.1008 6 6 4.2288 2.4313 -0.2224 7 6 5.3417 2.4423 0.8310 8 7 6.1533 1.2254 0.6947 9 6 7.2648 1.2748 1.5210 10 7 7.3262 1.8169 2.7143 11 7 8.5104 1.6811 3.1951 12 6 9.2683 1.0491 2.3444 13 6 10.7204 0.6937 2.5342 14 6 11.5677 1.4435 1.5041 15 6 11.1625 1.0905 3.9441 16 6 10.9026 -0.7908 2.3496 17 1 10.0519 -1.4147 2.1185 18 6 12.1553 -1.3527 2.4769 19 7 13.1912 -0.5931 2.7588 20 14 12.3810 -3.1930 2.2489 21 1 11.0696 -3.8181 1.9411 22 1 13.3232 -3.4410 1.1283 23 1 12.9295 -3.7827 3.4965 24 7 8.5004 0.7634 1.2496 25 6 8.9185 0.0574 0.0359 26 6 5.3550 0.0204 0.9567 27 6 4.2426 -0.0898 -0.0915 28 1 -0.3633 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.9500 -0.8400 0.0004 32 1 3.5560 3.2720 -0.0530 33 1 4.6662 2.5035 -1.2180 34 1 5.9728 3.3188 0.6841 35 1 4.8996 2.4751 1.8269 36 1 11.3666 2.5123 1.5768 37 1 12.6242 1.2585 1.6987 38 1 11.3161 1.0937 0.5029 39 1 10.5590 0.5565 4.6780 40 1 12.2130 0.8339 4.0812 41 1 11.0308 2.1643 4.0776 42 1 14.0725 -0.9884 2.8480 43 1 9.3813 0.7633 -0.6538 44 1 9.6368 -0.7197 0.2968 45 1 8.0483 -0.3964 -0.4383 46 1 4.9129 0.0864 1.9507 47 1 5.9956 -0.8598 0.9012 48 1 3.5792 -0.9159 0.1643 49 1 4.6815 -0.2600 -1.0747 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646679768.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:53:44 Heat of formation + Delta-G solvation = 58.631097 kcal Electronic energy + Delta-G solvation = -30460.628633 eV Core-core repulsion = 26459.417269 eV Total energy + Delta-G solvation = -4001.211364 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -43.87540 -41.49869 -39.41155 -37.56643 -36.00063 -35.74937 -35.26995 -33.30379 -32.33669 -30.42682 -28.71028 -28.06167 -27.59884 -27.27378 -26.76789 -24.88868 -23.76184 -23.11940 -21.84317 -20.92696 -20.51901 -19.47025 -18.47490 -17.86583 -17.49069 -17.13445 -16.87686 -16.79316 -16.63808 -15.94952 -15.69031 -15.35304 -15.30352 -15.14587 -14.78574 -14.57707 -14.10889 -13.86693 -13.65547 -13.55766 -13.37400 -13.31956 -13.11670 -12.95951 -12.76147 -12.66158 -12.58203 -12.50387 -12.42556 -12.30031 -12.22892 -11.87416 -11.70296 -11.43930 -11.35364 -11.01000 -10.88097 -10.43972 -10.37085 -10.22082 -9.66538 -9.43924 -8.05591 -6.23223 0.91368 1.34779 1.45408 1.50656 1.57775 1.63196 1.93774 2.04969 2.45341 2.69445 2.89484 3.19192 3.60001 3.78286 3.79927 3.94996 4.03656 4.10098 4.20222 4.26995 4.42004 4.44913 4.48100 4.49350 4.60219 4.67554 4.72824 4.74010 4.75923 4.81951 4.95575 4.96082 4.97851 4.99448 5.13950 5.22501 5.30713 5.37456 5.46711 5.51870 5.55712 5.59186 5.69077 5.87794 5.96503 6.07659 6.27239 6.32424 6.75709 6.88135 7.44473 7.48048 7.88736 8.95293 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020615 B = 0.002792 C = 0.002598 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.939319 B =10027.424961 C =10773.741826 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.740 5.740 3 C 0.701 3.299 4 O -0.635 6.635 5 N -0.632 5.632 6 C 0.145 3.855 7 C 0.065 3.935 8 N -0.441 5.441 9 C 0.325 3.675 10 N -0.356 5.356 11 N -0.347 5.347 12 C 0.232 3.768 13 C 0.141 3.859 14 C -0.116 4.116 15 C -0.106 4.106 16 C -0.520 4.520 17 H 0.053 0.947 18 C 0.036 3.964 19 N -0.897 5.897 20 Si 0.952 3.048 21 H -0.269 1.269 22 H -0.276 1.276 23 H -0.289 1.289 24 N -0.460 5.460 25 C 0.076 3.924 26 C 0.045 3.955 27 C 0.128 3.872 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.113 0.887 31 H 0.412 0.588 32 H 0.093 0.907 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.036 0.964 36 H 0.014 0.986 37 H 0.076 0.924 38 H 0.043 0.957 39 H 0.017 0.983 40 H 0.075 0.925 41 H 0.019 0.981 42 H 0.265 0.735 43 H 0.084 0.916 44 H 0.096 0.904 45 H 0.111 0.889 46 H 0.033 0.967 47 H 0.098 0.902 48 H 0.115 0.885 49 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.550 -4.366 -12.242 21.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.041 4.041 2 N -0.398 5.398 3 C 0.402 3.598 4 O -0.516 6.516 5 N -0.369 5.369 6 C 0.022 3.978 7 C -0.064 4.064 8 N -0.167 5.167 9 C -0.032 4.032 10 N -0.200 5.200 11 N -0.186 5.186 12 C -0.037 4.037 13 C 0.138 3.862 14 C -0.174 4.174 15 C -0.165 4.165 16 C -0.559 4.559 17 H 0.071 0.929 18 C -0.165 4.165 19 N -0.535 5.535 20 Si 0.778 3.222 21 H -0.193 1.193 22 H -0.202 1.202 23 H -0.216 1.216 24 N -0.151 5.151 25 C -0.066 4.066 26 C -0.083 4.083 27 C 0.005 3.995 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.131 0.869 31 H 0.250 0.750 32 H 0.111 0.889 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.054 0.946 36 H 0.033 0.967 37 H 0.095 0.905 38 H 0.062 0.938 39 H 0.036 0.964 40 H 0.094 0.906 41 H 0.038 0.962 42 H 0.074 0.926 43 H 0.103 0.897 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.052 0.948 47 H 0.116 0.884 48 H 0.133 0.867 49 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -18.122 -2.959 -11.435 21.631 hybrid contribution 0.842 -1.549 0.167 1.771 sum -17.280 -4.509 -11.268 21.116 Atomic orbital electron populations 1.21549 0.77204 1.04125 1.01236 1.45041 1.08424 1.06803 1.79496 1.16075 0.81647 0.84581 0.77480 1.90891 1.68413 1.32510 1.59801 1.47391 1.03926 1.08565 1.77006 1.21546 0.91164 0.86267 0.98845 1.22398 0.94338 0.90786 0.98857 1.58751 1.04666 1.05461 1.47824 1.22473 0.87537 1.01286 0.91951 1.74355 1.14432 1.24161 1.07062 1.73921 0.98180 1.20365 1.26118 1.25834 0.98054 0.96204 0.83588 1.16863 0.79439 0.95613 0.94246 1.21686 1.02751 0.95302 0.97689 1.21484 1.02230 0.96688 0.96080 1.20970 0.93822 0.91013 1.50060 0.92915 1.25457 0.95495 1.01396 0.94170 1.69923 0.99838 1.36126 1.47605 0.85600 0.78213 0.80825 0.77541 1.19285 1.20167 1.21579 1.46165 1.08177 1.43416 1.17363 1.22357 1.03258 0.97949 0.83008 1.22710 0.95393 0.91589 0.98615 1.21906 0.91978 0.85572 1.00018 0.93841 0.93089 0.86864 0.74970 0.88921 0.88586 0.89507 0.94555 0.96675 0.90489 0.93796 0.96351 0.90604 0.96159 0.92563 0.89749 0.88560 0.87065 0.94831 0.88394 0.86678 0.87618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.16 10.71 127.77 1.37 2.53 16 2 N -0.74 -10.19 5.62 -500.19 -2.81 -13.00 16 3 C 0.70 15.48 8.30 179.06 1.49 16.97 16 4 O -0.63 -19.83 15.80 -4.00 -0.06 -19.89 16 5 N -0.63 -11.75 3.01 -835.94 -2.52 -14.26 16 6 C 0.15 2.93 6.61 86.35 0.57 3.50 16 7 C 0.06 1.62 5.22 86.38 0.45 2.07 16 8 N -0.44 -11.37 4.62 -705.08 -3.25 -14.63 16 9 C 0.32 11.58 6.71 260.11 1.74 13.33 16 10 N -0.36 -15.55 11.70 -58.00 -0.68 -16.23 16 11 N -0.35 -16.79 11.50 -49.54 -0.57 -17.36 16 12 C 0.23 10.47 6.29 137.64 0.87 11.34 16 13 C 0.14 6.64 0.54 -53.68 -0.03 6.61 16 14 C -0.12 -5.12 8.06 71.98 0.58 -4.54 16 15 C -0.11 -5.27 7.76 71.98 0.56 -4.71 16 16 C -0.52 -25.04 6.44 25.60 0.16 -24.87 16 17 H 0.05 2.53 6.89 -2.91 -0.02 2.51 16 18 C 0.04 1.74 5.15 84.65 0.44 2.17 16 19 N -0.90 -45.11 9.41 21.45 0.20 -44.90 16 20 Si 0.95 38.65 29.54 68.60 2.03 40.67 16 21 H -0.27 -10.56 7.11 99.48 0.71 -9.85 16 22 H -0.28 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.29 -12.07 7.11 99.48 0.71 -11.36 16 24 N -0.46 -17.00 3.21 -538.20 -1.73 -18.73 16 25 C 0.08 2.13 9.90 127.77 1.26 3.40 16 26 C 0.05 0.91 5.55 86.38 0.48 1.39 16 27 C 0.13 1.58 6.53 86.35 0.56 2.15 16 28 H 0.04 0.64 8.14 -2.39 -0.02 0.62 16 29 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 31 H 0.41 2.93 6.37 -92.71 -0.59 2.34 16 32 H 0.09 2.11 7.04 -2.39 -0.02 2.10 16 33 H 0.10 1.59 8.14 -2.39 -0.02 1.57 16 34 H 0.09 2.28 8.09 -2.39 -0.02 2.26 16 35 H 0.04 1.09 8.09 -2.38 -0.02 1.07 16 36 H 0.01 0.62 8.14 -2.39 -0.02 0.60 16 37 H 0.08 3.68 6.23 -2.38 -0.01 3.66 16 38 H 0.04 1.76 6.90 -2.38 -0.02 1.75 16 39 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.08 3.91 6.07 -2.39 -0.01 3.90 16 41 H 0.02 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.26 12.74 8.31 -92.71 -0.77 11.97 16 43 H 0.08 2.16 7.88 -2.39 -0.02 2.14 16 44 H 0.10 3.07 5.68 -2.39 -0.01 3.05 16 45 H 0.11 2.30 8.11 -2.39 -0.02 2.28 16 46 H 0.03 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.10 1.86 8.09 -2.39 -0.02 1.84 16 48 H 0.12 0.71 5.75 -2.39 -0.01 0.69 16 49 H 0.11 0.94 8.14 -2.38 -0.02 0.92 16 Total: -1.00 -70.97 382.29 1.49 -69.48 By element: Atomic # 1 Polarization: 17.14 SS G_CDS: 0.38 Total: 17.52 kcal Atomic # 6 Polarization: 20.83 SS G_CDS: 10.51 Total: 31.34 kcal Atomic # 7 Polarization: -127.76 SS G_CDS: -11.36 Total: -139.12 kcal Atomic # 8 Polarization: -19.83 SS G_CDS: -0.06 Total: -19.89 kcal Atomic # 14 Polarization: 38.65 SS G_CDS: 2.03 Total: 40.67 kcal Total: -70.97 1.49 -69.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646679768.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.106 kcal (2) G-P(sol) polarization free energy of solvation -70.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds