Wall clock time and date at job start Tue Mar 31 2020 19:27:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42904 * 114.00282 * 2 1 4 4 C 1.53001 * 109.47220 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46885 * 179.97438 * 4 3 2 6 6 C 1.36453 * 127.13021 * 85.76044 * 5 4 3 7 7 N 1.38579 * 126.47623 * 0.03664 * 6 5 4 8 8 C 1.46903 * 111.00089 * 72.25103 * 7 6 5 9 9 C 1.50695 * 109.47211 * 60.65433 * 8 7 6 10 10 H 1.08000 * 119.99804 * 4.72084 * 9 8 7 11 11 C 1.37871 * 120.00036 * 184.72303 * 9 8 7 12 12 N 1.31518 * 119.99806 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00142 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47236 * 89.99753 * 13 11 9 15 15 H 1.48499 * 109.47321 * 209.99880 * 13 11 9 16 16 H 1.48499 * 109.47184 * 329.99955 * 13 11 9 17 17 C 1.46897 * 111.00225 * 196.20674 * 7 6 5 18 18 C 1.53001 * 109.47620 * 165.93106 * 17 7 6 19 19 C 1.53002 * 117.51916 * 117.35715 * 18 17 7 20 20 C 1.52998 * 117.49986 * 185.98881 * 18 17 7 21 21 N 1.31217 * 107.04968 * 179.76986 * 6 5 4 22 22 N 1.28521 * 109.86423 * 0.22718 * 21 6 5 23 23 C 1.30298 * 110.05353 * 359.97438 * 22 21 6 24 24 C 1.50694 * 126.35132 * 179.97438 * 23 22 21 25 25 O 1.42902 * 115.55363 * 214.44336 * 24 23 22 26 26 C 1.53005 * 117.49709 * 68.77228 * 24 23 22 27 27 C 1.53000 * 117.49920 * 0.11749 * 24 23 22 28 28 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47395 * 300.00056 * 1 2 3 30 30 H 1.09004 * 109.47466 * 59.99967 * 1 2 3 31 31 H 1.08998 * 109.47004 * 59.99848 * 3 2 1 32 32 H 1.09002 * 109.46953 * 300.00238 * 3 2 1 33 33 H 1.08998 * 109.47153 * 60.00066 * 4 3 2 34 34 H 1.08994 * 109.47185 * 299.99883 * 4 3 2 35 35 H 1.09006 * 109.46807 * 180.65158 * 8 7 6 36 36 H 1.08998 * 109.47046 * 300.64783 * 8 7 6 37 37 H 0.97006 * 119.99906 * 180.02562 * 12 11 9 38 38 H 1.09006 * 109.46966 * 45.92873 * 17 7 6 39 39 H 1.09001 * 109.47031 * 285.93042 * 17 7 6 40 40 H 1.09001 * 115.54648 * 331.65671 * 18 17 7 41 41 H 1.09002 * 117.49213 * 214.97405 * 19 18 17 42 42 H 1.08999 * 117.49605 * 359.97438 * 19 18 17 43 43 H 1.08998 * 117.50136 * 359.97176 * 20 18 17 44 44 H 1.08999 * 117.49903 * 144.99942 * 20 18 17 45 45 H 0.96700 * 113.99843 * 325.58071 * 25 24 23 46 46 H 1.09000 * 117.49521 * 0.02562 * 26 24 23 47 47 H 1.09001 * 117.49415 * 145.01905 * 26 24 23 48 48 H 1.09004 * 117.49828 * 214.97975 * 27 24 23 49 49 H 1.09004 * 117.49918 * 359.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.3924 3.3088 1.0845 7 7 4.1437 2.9920 2.4105 8 6 5.0845 1.9724 2.8936 9 6 6.4925 2.4999 2.7925 10 1 6.6662 3.5191 2.4803 11 6 7.5589 1.6815 3.0986 12 7 8.7877 2.1417 3.0098 13 14 7.2585 -0.0811 3.6392 14 1 7.2397 -0.9678 2.4481 15 1 8.3440 -0.5090 4.5578 16 1 5.9530 -0.1678 4.3415 17 6 4.1886 4.1925 3.2560 18 6 3.5757 3.8776 4.6220 19 6 4.4851 3.9884 5.8474 20 6 3.4002 5.0390 5.6023 21 7 4.9289 4.4188 0.6351 22 7 5.0126 4.3756 -0.6466 23 6 4.5390 3.2446 -1.0875 24 6 4.4591 2.8107 -2.5283 25 8 3.3249 2.0111 -2.8693 26 6 5.7749 2.5150 -3.2511 27 6 4.9837 3.7811 -3.5885 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8574 0.6435 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 4.8596 1.7341 3.9332 36 1 4.9890 1.0728 2.2857 37 1 9.5381 1.5658 3.2248 38 1 3.6230 4.9935 2.7799 39 1 5.2242 4.5067 3.3862 40 1 2.8167 3.0952 4.6276 41 1 4.3244 3.2788 6.6591 42 1 5.5205 4.2853 5.6805 43 1 3.7219 6.0275 5.2743 44 1 2.5259 5.0208 6.2529 45 1 3.0371 1.4156 -2.1638 46 1 6.6982 2.6339 -2.6841 47 1 5.7752 1.7107 -3.9868 48 1 4.4638 3.8094 -4.5462 49 1 5.3862 4.7337 -3.2438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646818606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:56 Heat of formation + Delta-G solvation = 67.703367 kcal Electronic energy + Delta-G solvation = -31164.554542 eV Core-core repulsion = 27131.443830 eV Total energy + Delta-G solvation = -4033.110712 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.62897 -38.60269 -38.22884 -37.83339 -35.78628 -35.01675 -34.01743 -32.55063 -29.92813 -29.40873 -28.08562 -26.59052 -25.60911 -23.98101 -23.17109 -22.50855 -22.23443 -21.90183 -20.73074 -20.29320 -19.47471 -17.87933 -17.14946 -16.91504 -16.34900 -16.10527 -15.92369 -15.72844 -15.22053 -15.01936 -14.72967 -14.52802 -14.29790 -13.87578 -13.64212 -13.45338 -13.08086 -12.57472 -12.46447 -12.42736 -12.27481 -11.90017 -11.62436 -11.53889 -11.48389 -11.47249 -11.11876 -11.09036 -10.84153 -10.71282 -10.59471 -10.48450 -10.07913 -9.98957 -9.97089 -9.89311 -9.84656 -9.55168 -9.43181 -8.78496 -8.70798 -7.60722 -6.21157 -4.23822 2.06811 2.33498 3.13872 3.22268 3.23071 3.26779 3.56479 3.68430 3.86088 4.12914 4.24865 4.26918 4.43991 4.45827 4.68322 4.86646 4.95765 4.99364 5.08343 5.11851 5.13347 5.21734 5.33056 5.34944 5.40660 5.42215 5.43710 5.56667 5.66698 5.68014 5.82746 5.89803 5.94710 6.00001 6.14823 6.19809 6.26380 6.35829 6.42371 6.56258 6.58231 6.74659 6.77415 6.78344 6.92315 7.20769 7.27218 7.53190 7.84991 8.28153 8.86455 9.24784 9.37201 10.91146 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.004885 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.115787 B = 5730.078870 C = 6331.294328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.386 6.386 3 C 0.044 3.956 4 C 0.104 3.896 5 N -0.473 5.473 6 C 0.419 3.581 7 N -0.459 5.459 8 C 0.160 3.840 9 C -0.557 4.557 10 H 0.088 0.912 11 C 0.081 3.919 12 N -0.886 5.886 13 Si 0.868 3.132 14 H -0.276 1.276 15 H -0.283 1.283 16 H -0.263 1.263 17 C 0.105 3.895 18 C -0.139 4.139 19 C -0.172 4.172 20 C -0.183 4.183 21 N -0.316 5.316 22 N -0.262 5.262 23 C 0.161 3.839 24 C 0.132 3.868 25 O -0.524 6.524 26 C -0.178 4.178 27 C -0.128 4.128 28 H 0.089 0.911 29 H 0.045 0.955 30 H 0.043 0.957 31 H 0.071 0.929 32 H 0.057 0.943 33 H 0.097 0.903 34 H 0.116 0.884 35 H 0.051 0.949 36 H 0.022 0.978 37 H 0.265 0.735 38 H 0.070 0.930 39 H 0.076 0.924 40 H 0.104 0.896 41 H 0.087 0.913 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.376 0.624 46 H 0.107 0.893 47 H 0.107 0.893 48 H 0.107 0.893 49 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.644 -2.460 -5.644 15.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.034 4.034 4 C -0.020 4.020 5 N -0.170 5.170 6 C 0.063 3.937 7 N -0.183 5.183 8 C 0.036 3.964 9 C -0.595 4.595 10 H 0.106 0.894 11 C -0.123 4.123 12 N -0.523 5.523 13 Si 0.694 3.306 14 H -0.202 1.202 15 H -0.208 1.208 16 H -0.187 1.187 17 C -0.022 4.022 18 C -0.157 4.157 19 C -0.209 4.209 20 C -0.220 4.220 21 N -0.160 5.160 22 N -0.102 5.102 23 C -0.106 4.106 24 C 0.088 3.912 25 O -0.332 6.332 26 C -0.216 4.216 27 C -0.166 4.166 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.115 0.885 34 H 0.134 0.866 35 H 0.069 0.931 36 H 0.040 0.960 37 H 0.075 0.925 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.122 0.878 41 H 0.106 0.894 42 H 0.120 0.880 43 H 0.110 0.890 44 H 0.106 0.894 45 H 0.227 0.773 46 H 0.126 0.874 47 H 0.125 0.875 48 H 0.125 0.875 49 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -14.164 -1.210 -6.090 15.465 hybrid contribution -0.084 -2.335 0.942 2.520 sum -14.248 -3.545 -5.149 15.559 Atomic orbital electron populations 1.22781 0.80146 1.03014 1.00369 1.87808 1.20400 1.26608 1.95580 1.22859 0.92704 0.85642 1.02210 1.21644 0.92226 0.81602 1.06494 1.45725 1.49365 1.15680 1.06264 1.22512 0.94920 0.87920 0.88337 1.59247 1.50046 1.13591 0.95372 1.20398 0.90470 0.89131 0.96444 1.21606 0.88770 1.01504 1.47642 0.89368 1.24872 0.94975 0.98034 0.94454 1.69916 0.98271 1.36484 1.47628 0.86981 0.78703 0.85624 0.79256 1.20210 1.20846 1.18736 1.21515 1.01781 0.89218 0.89718 1.22131 1.02309 1.00628 0.90679 1.23029 0.96859 1.01504 0.99520 1.22926 1.01123 0.94806 1.03195 1.74726 1.18741 1.20412 1.02140 1.73812 1.16753 1.15549 1.04077 1.23652 1.06154 0.91571 0.89241 1.18803 0.88281 0.99871 0.84242 1.86530 1.46684 1.56125 1.43884 1.23731 0.95127 0.99963 1.02806 1.23289 1.00261 0.95457 0.97554 0.89235 0.93674 0.93835 0.91071 0.92444 0.88513 0.86607 0.93080 0.96020 0.92479 0.91123 0.90560 0.87808 0.89443 0.88031 0.89001 0.89361 0.77268 0.87444 0.87472 0.87502 0.86267 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -4.51 10.70 -35.23 -0.38 -4.89 16 3 C 0.04 0.53 5.74 37.16 0.21 0.75 16 4 C 0.10 1.51 5.60 -4.04 -0.02 1.48 16 5 N -0.47 -8.53 2.81 -114.09 -0.32 -8.85 16 6 C 0.42 8.68 5.86 -318.88 -1.87 6.81 16 7 N -0.46 -9.09 4.71 -175.88 -0.83 -9.92 16 8 C 0.16 3.55 3.95 -4.98 -0.02 3.53 16 9 C -0.56 -14.85 8.21 -34.44 -0.28 -15.13 16 10 H 0.09 2.67 6.61 -52.49 -0.35 2.33 16 11 C 0.08 2.23 5.47 -17.82 -0.10 2.13 16 12 N -0.89 -26.39 13.96 55.43 0.77 -25.61 16 13 Si 0.87 20.31 27.38 -169.99 -4.65 15.66 16 14 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 H -0.26 -5.79 6.68 56.52 0.38 -5.41 16 17 C 0.10 1.97 4.55 -3.82 -0.02 1.96 16 18 C -0.14 -2.21 4.97 -90.62 -0.45 -2.66 16 19 C -0.17 -2.68 10.18 -26.73 -0.27 -2.95 16 20 C -0.18 -2.47 10.25 -26.73 -0.27 -2.75 16 21 N -0.32 -7.19 11.17 30.31 0.34 -6.85 16 22 N -0.26 -5.55 11.76 32.99 0.39 -5.17 16 23 C 0.16 2.95 7.50 -154.02 -1.15 1.80 16 24 C 0.13 1.98 3.18 -91.77 -0.29 1.69 16 25 O -0.52 -7.26 13.82 -35.23 -0.49 -7.75 16 26 C -0.18 -2.37 10.19 -26.69 -0.27 -2.64 16 27 C -0.13 -1.66 10.10 -26.70 -0.27 -1.93 16 28 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.66 6.98 -51.93 -0.36 0.30 16 33 H 0.10 1.21 6.38 -51.93 -0.33 0.88 16 34 H 0.12 1.81 6.04 -51.93 -0.31 1.50 16 35 H 0.05 1.12 6.73 -51.93 -0.35 0.77 16 36 H 0.02 0.48 5.25 -51.93 -0.27 0.21 16 37 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 38 H 0.07 1.30 7.86 -51.93 -0.41 0.89 16 39 H 0.08 1.68 6.08 -51.93 -0.32 1.37 16 40 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.82 16 42 H 0.10 1.77 8.03 -51.93 -0.42 1.36 16 43 H 0.09 1.22 8.14 -51.93 -0.42 0.80 16 44 H 0.09 1.02 8.14 -51.93 -0.42 0.60 16 45 H 0.38 4.58 3.81 45.56 0.17 4.75 16 46 H 0.11 1.58 8.14 -51.93 -0.42 1.16 16 47 H 0.11 1.21 8.14 -51.93 -0.42 0.79 16 48 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.12 1.61 7.89 -51.93 -0.41 1.20 16 LS Contribution 393.49 15.07 5.93 5.93 Total: -1.00 -32.01 393.49 -10.37 -42.38 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: -7.16 Total: 11.56 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -3.97 Total: -6.50 kcal Atomic # 7 Polarization: -56.75 SS G_CDS: 0.35 Total: -56.40 kcal Atomic # 8 Polarization: -11.77 SS G_CDS: -0.86 Total: -12.63 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -4.65 Total: 15.66 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.01 -10.37 -42.38 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646818606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.084 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.367 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.381 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds