Wall clock time and date at job start Tue Mar 31 2020 19:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.42904 * 114.00282 * 2 1 4 4 C 1.53001 * 109.47220 * 179.97438 * 3 2 1 5 5 N 1.46502 * 109.46885 * 179.97438 * 4 3 2 6 6 C 1.36453 * 127.13021 * 85.76044 * 5 4 3 7 7 N 1.38579 * 126.47623 * 0.03664 * 6 5 4 8 8 C 1.46903 * 111.00089 * 72.25103 * 7 6 5 9 9 C 1.50695 * 109.47211 * 60.65433 * 8 7 6 10 10 H 1.08000 * 119.99804 * 4.72084 * 9 8 7 11 11 C 1.37871 * 120.00036 * 184.72303 * 9 8 7 12 12 N 1.31518 * 119.99806 * 179.97438 * 11 9 8 13 13 Si 1.86792 * 120.00142 * 359.97438 * 11 9 8 14 14 H 1.48502 * 109.47236 * 89.99753 * 13 11 9 15 15 H 1.48499 * 109.47321 * 209.99880 * 13 11 9 16 16 H 1.48499 * 109.47184 * 329.99955 * 13 11 9 17 17 C 1.46897 * 111.00225 * 196.20674 * 7 6 5 18 18 C 1.53001 * 109.47620 * 165.93106 * 17 7 6 19 19 C 1.53002 * 117.51916 * 117.35715 * 18 17 7 20 20 C 1.52998 * 117.49986 * 185.98881 * 18 17 7 21 21 N 1.31217 * 107.04968 * 179.76986 * 6 5 4 22 22 N 1.28521 * 109.86423 * 0.22718 * 21 6 5 23 23 C 1.30298 * 110.05353 * 359.97438 * 22 21 6 24 24 C 1.50694 * 126.35132 * 179.97438 * 23 22 21 25 25 O 1.42902 * 115.55363 * 214.44336 * 24 23 22 26 26 C 1.53005 * 117.49709 * 68.77228 * 24 23 22 27 27 C 1.53000 * 117.49920 * 0.11749 * 24 23 22 28 28 H 1.09001 * 109.47188 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47395 * 300.00056 * 1 2 3 30 30 H 1.09004 * 109.47466 * 59.99967 * 1 2 3 31 31 H 1.08998 * 109.47004 * 59.99848 * 3 2 1 32 32 H 1.09002 * 109.46953 * 300.00238 * 3 2 1 33 33 H 1.08998 * 109.47153 * 60.00066 * 4 3 2 34 34 H 1.08994 * 109.47185 * 299.99883 * 4 3 2 35 35 H 1.09006 * 109.46807 * 180.65158 * 8 7 6 36 36 H 1.08998 * 109.47046 * 300.64783 * 8 7 6 37 37 H 0.97006 * 119.99906 * 180.02562 * 12 11 9 38 38 H 1.09006 * 109.46966 * 45.92873 * 17 7 6 39 39 H 1.09001 * 109.47031 * 285.93042 * 17 7 6 40 40 H 1.09001 * 115.54648 * 331.65671 * 18 17 7 41 41 H 1.09002 * 117.49213 * 214.97405 * 19 18 17 42 42 H 1.08999 * 117.49605 * 359.97438 * 19 18 17 43 43 H 1.08998 * 117.50136 * 359.97176 * 20 18 17 44 44 H 1.08999 * 117.49903 * 144.99942 * 20 18 17 45 45 H 0.96700 * 113.99843 * 325.58071 * 25 24 23 46 46 H 1.09000 * 117.49521 * 0.02562 * 26 24 23 47 47 H 1.09001 * 117.49415 * 145.01905 * 26 24 23 48 48 H 1.09004 * 117.49828 * 214.97975 * 27 24 23 49 49 H 1.09004 * 117.49918 * 359.97438 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1313 2.5230 0.0000 6 6 4.3924 3.3088 1.0845 7 7 4.1437 2.9920 2.4105 8 6 5.0845 1.9724 2.8936 9 6 6.4925 2.4999 2.7925 10 1 6.6662 3.5191 2.4803 11 6 7.5589 1.6815 3.0986 12 7 8.7877 2.1417 3.0098 13 14 7.2585 -0.0811 3.6392 14 1 7.2397 -0.9678 2.4481 15 1 8.3440 -0.5090 4.5578 16 1 5.9530 -0.1678 4.3415 17 6 4.1886 4.1925 3.2560 18 6 3.5757 3.8776 4.6220 19 6 4.4851 3.9884 5.8474 20 6 3.4002 5.0390 5.6023 21 7 4.9289 4.4188 0.6351 22 7 5.0126 4.3756 -0.6466 23 6 4.5390 3.2446 -1.0875 24 6 4.4591 2.8107 -2.5283 25 8 3.3249 2.0111 -2.8693 26 6 5.7749 2.5150 -3.2511 27 6 4.9837 3.7811 -3.5885 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5138 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8574 0.6435 -0.8891 34 1 3.8567 0.6439 0.8908 35 1 4.8596 1.7341 3.9332 36 1 4.9890 1.0728 2.2857 37 1 9.5381 1.5658 3.2248 38 1 3.6230 4.9935 2.7799 39 1 5.2242 4.5067 3.3862 40 1 2.8167 3.0952 4.6276 41 1 4.3244 3.2788 6.6591 42 1 5.5205 4.2853 5.6805 43 1 3.7219 6.0275 5.2743 44 1 2.5259 5.0208 6.2529 45 1 3.0371 1.4156 -2.1638 46 1 6.6982 2.6339 -2.6841 47 1 5.7752 1.7107 -3.9868 48 1 4.4638 3.8094 -4.5462 49 1 5.3862 4.7337 -3.2438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646818606.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:55 Heat of formation + Delta-G solvation = 46.460510 kcal Electronic energy + Delta-G solvation = -31165.475702 eV Core-core repulsion = 27131.443830 eV Total energy + Delta-G solvation = -4034.031872 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.14950 -39.83896 -39.38577 -38.98689 -37.17886 -36.30548 -35.17963 -34.62336 -31.09663 -31.05044 -29.83534 -27.46780 -27.14788 -25.32914 -24.41872 -23.99306 -23.49992 -23.13647 -22.04721 -21.67780 -20.94549 -19.23033 -19.03562 -18.12701 -17.53560 -17.43994 -17.17811 -16.98954 -16.53424 -16.23841 -16.07882 -15.83924 -15.63627 -15.33329 -14.88506 -14.66412 -14.46449 -14.17011 -14.04169 -13.59808 -13.45282 -13.29816 -13.25166 -12.81268 -12.74324 -12.47628 -12.40349 -12.33843 -12.31240 -12.27004 -12.16840 -11.82290 -11.80462 -11.57176 -11.31276 -11.22617 -11.07651 -10.86252 -10.79591 -10.74569 -10.27461 -9.27211 -8.34537 -6.42188 0.59333 0.98534 1.29040 1.31829 1.41971 1.70838 2.27202 2.48634 2.54521 2.68187 2.83390 2.99475 3.02137 3.13471 3.30012 3.66682 3.74568 3.85525 3.92103 3.93890 3.98937 4.06160 4.19845 4.21921 4.32277 4.38936 4.52375 4.54254 4.54563 4.62383 4.65232 4.67757 4.79218 4.83549 4.86048 4.88552 4.92755 4.95503 4.97283 5.09205 5.15767 5.24276 5.34278 5.40661 5.48299 5.75878 5.97522 6.14922 6.17428 6.26474 6.67112 7.22268 7.67749 8.81932 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008508 B = 0.004885 C = 0.004421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3290.115787 B = 5730.078870 C = 6331.294328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.398 6.398 3 C 0.059 3.941 4 C 0.096 3.904 5 N -0.470 5.470 6 C 0.401 3.599 7 N -0.442 5.442 8 C 0.172 3.828 9 C -0.550 4.550 10 H 0.037 0.963 11 C 0.019 3.981 12 N -0.942 5.942 13 Si 0.937 3.063 14 H -0.268 1.268 15 H -0.284 1.284 16 H -0.234 1.234 17 C 0.112 3.888 18 C -0.149 4.149 19 C -0.183 4.183 20 C -0.154 4.154 21 N -0.355 5.355 22 N -0.299 5.299 23 C 0.175 3.825 24 C 0.114 3.886 25 O -0.517 6.517 26 C -0.167 4.167 27 C -0.115 4.115 28 H 0.107 0.893 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.062 0.938 32 H 0.067 0.933 33 H 0.118 0.882 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.033 0.967 37 H 0.266 0.734 38 H 0.070 0.930 39 H 0.032 0.968 40 H 0.120 0.880 41 H 0.107 0.893 42 H 0.069 0.931 43 H 0.090 0.910 44 H 0.121 0.879 45 H 0.382 0.618 46 H 0.087 0.913 47 H 0.136 0.864 48 H 0.136 0.864 49 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.668 -4.929 -6.108 19.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.316 6.316 3 C -0.019 4.019 4 C -0.026 4.026 5 N -0.166 5.166 6 C 0.044 3.956 7 N -0.165 5.165 8 C 0.046 3.954 9 C -0.589 4.589 10 H 0.055 0.945 11 C -0.180 4.180 12 N -0.582 5.582 13 Si 0.759 3.241 14 H -0.193 1.193 15 H -0.210 1.210 16 H -0.156 1.156 17 C -0.015 4.015 18 C -0.168 4.168 19 C -0.220 4.220 20 C -0.191 4.191 21 N -0.199 5.199 22 N -0.139 5.139 23 C -0.093 4.093 24 C 0.070 3.930 25 O -0.326 6.326 26 C -0.206 4.206 27 C -0.153 4.153 28 H 0.126 0.874 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.085 0.915 33 H 0.136 0.864 34 H 0.124 0.876 35 H 0.080 0.920 36 H 0.051 0.949 37 H 0.075 0.925 38 H 0.088 0.912 39 H 0.051 0.949 40 H 0.138 0.862 41 H 0.125 0.875 42 H 0.088 0.912 43 H 0.108 0.892 44 H 0.139 0.861 45 H 0.235 0.765 46 H 0.105 0.895 47 H 0.154 0.846 48 H 0.154 0.846 49 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -17.234 -3.678 -6.560 18.803 hybrid contribution 0.857 -1.475 0.979 1.967 sum -16.377 -5.153 -5.581 18.053 Atomic orbital electron populations 1.23025 0.78336 1.04522 1.01157 1.87788 1.22287 1.25850 1.95679 1.22597 0.90931 0.86174 1.02226 1.21917 0.93913 0.79694 1.07073 1.45910 1.48886 1.16529 1.05277 1.22649 0.95581 0.88329 0.89082 1.59351 1.48583 1.13398 0.95153 1.20209 0.88108 0.89845 0.97259 1.21724 0.91475 0.99336 1.46323 0.94506 1.25829 0.94382 1.03200 0.94609 1.70097 0.99585 1.38573 1.49908 0.85873 0.79795 0.79182 0.79205 1.19289 1.20967 1.15630 1.21410 0.99434 0.89106 0.91558 1.22094 1.02854 1.02890 0.88913 1.22999 0.95722 1.03391 0.99932 1.23025 1.00951 0.93726 1.01441 1.74607 1.19847 1.22237 1.03214 1.73718 1.18932 1.17609 1.03648 1.24393 1.03521 0.90622 0.90800 1.18992 0.89726 1.01693 0.82635 1.86535 1.46139 1.56038 1.43868 1.23769 0.93230 1.01159 1.02422 1.23401 0.99379 0.94657 0.97825 0.87426 0.93284 0.92676 0.91985 0.91515 0.86367 0.87551 0.91954 0.94943 0.92527 0.91201 0.94910 0.86203 0.87514 0.91206 0.89168 0.86057 0.76519 0.89490 0.84634 0.84584 0.87411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 11.01 113.37 1.25 1.60 16 2 O -0.40 -8.20 10.70 -148.98 -1.59 -9.79 16 3 C 0.06 1.31 5.74 71.98 0.41 1.73 16 4 C 0.10 2.64 5.60 86.38 0.48 3.13 16 5 N -0.47 -16.92 2.81 -514.86 -1.45 -18.37 16 6 C 0.40 17.13 5.86 260.11 1.52 18.65 16 7 N -0.44 -17.78 4.71 -710.35 -3.35 -21.13 16 8 C 0.17 7.60 3.95 85.56 0.34 7.94 16 9 C -0.55 -30.57 8.21 25.60 0.21 -30.36 16 10 H 0.04 2.40 6.61 -2.91 -0.02 2.39 16 11 C 0.02 1.06 5.47 84.65 0.46 1.52 16 12 N -0.94 -58.73 13.96 21.45 0.30 -58.43 16 13 Si 0.94 41.69 27.38 68.60 1.88 43.57 16 14 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 15 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 16 H -0.23 -9.22 6.68 99.48 0.66 -8.56 16 17 C 0.11 4.40 4.55 86.30 0.39 4.79 16 18 C -0.15 -4.63 4.97 -10.79 -0.05 -4.68 16 19 C -0.18 -5.63 10.18 30.60 0.31 -5.32 16 20 C -0.15 -3.91 10.25 30.60 0.31 -3.59 16 21 N -0.36 -17.09 11.17 -58.01 -0.65 -17.74 16 22 N -0.30 -13.27 11.76 -49.54 -0.58 -13.85 16 23 C 0.18 6.47 7.50 137.64 1.03 7.50 16 24 C 0.11 3.25 3.18 -11.54 -0.04 3.22 16 25 O -0.52 -12.87 13.82 -148.98 -2.06 -14.93 16 26 C -0.17 -4.19 10.19 30.62 0.31 -3.88 16 27 C -0.12 -2.79 10.10 30.62 0.31 -2.48 16 28 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 1.51 8.14 -2.39 -0.02 1.50 16 32 H 0.07 1.37 6.98 -2.39 -0.02 1.36 16 33 H 0.12 2.70 6.38 -2.39 -0.02 2.68 16 34 H 0.11 3.15 6.04 -2.39 -0.01 3.14 16 35 H 0.06 2.65 6.73 -2.38 -0.02 2.64 16 36 H 0.03 1.39 5.25 -2.39 -0.01 1.38 16 37 H 0.27 15.50 8.31 -92.70 -0.77 14.73 16 38 H 0.07 2.70 7.86 -2.38 -0.02 2.68 16 39 H 0.03 1.57 6.08 -2.39 -0.01 1.55 16 40 H 0.12 3.39 8.14 -2.39 -0.02 3.37 16 41 H 0.11 2.84 8.14 -2.39 -0.02 2.82 16 42 H 0.07 2.58 8.03 -2.39 -0.02 2.56 16 43 H 0.09 2.33 8.14 -2.39 -0.02 2.31 16 44 H 0.12 2.35 8.14 -2.39 -0.02 2.33 16 45 H 0.38 8.24 3.81 -74.06 -0.28 7.96 16 46 H 0.09 2.56 8.14 -2.39 -0.02 2.54 16 47 H 0.14 2.63 8.14 -2.39 -0.02 2.61 16 48 H 0.14 2.51 8.14 -2.38 -0.02 2.49 16 49 H 0.11 2.89 7.89 -2.38 -0.02 2.87 16 Total: -1.00 -74.37 393.49 0.41 -73.97 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: 0.65 Total: 36.95 kcal Atomic # 6 Polarization: -7.51 SS G_CDS: 7.26 Total: -0.25 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -5.73 Total: -129.52 kcal Atomic # 8 Polarization: -21.07 SS G_CDS: -3.65 Total: -24.72 kcal Atomic # 14 Polarization: 41.69 SS G_CDS: 1.88 Total: 43.57 kcal Total: -74.37 0.41 -73.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646818606.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.428 kcal (2) G-P(sol) polarization free energy of solvation -74.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds