Wall clock time and date at job start Tue Mar 31 2020 19:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42905 * 113.99703 * 2 1 4 4 C 1.52998 * 109.46692 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47053 * 179.97438 * 4 3 2 6 6 C 1.36448 * 127.13895 * 85.71107 * 5 4 3 7 7 N 1.38579 * 126.47474 * 359.97438 * 6 5 4 8 8 C 1.46846 * 110.99948 * 115.02627 * 7 6 5 9 9 C 1.53039 * 109.52211 * 185.84564 * 8 7 6 10 10 C 1.53122 * 109.27499 * 300.81644 * 9 8 7 11 11 C 1.53123 * 109.15982 * 57.65970 * 10 9 8 12 12 H 1.09005 * 109.50611 * 62.32019 * 11 10 9 13 13 C 1.50697 * 109.50635 * 182.40233 * 11 10 9 14 14 H 1.08003 * 120.00289 * 119.91744 * 13 11 10 15 15 C 1.37875 * 119.99687 * 300.19647 * 13 11 10 16 16 N 1.31513 * 120.00071 * 359.72222 * 15 13 11 17 17 Si 1.86798 * 119.99844 * 179.72471 * 15 13 11 18 18 H 1.48505 * 109.47462 * 89.99725 * 17 15 13 19 19 H 1.48502 * 109.47314 * 209.99991 * 17 15 13 20 20 H 1.48507 * 109.47044 * 329.99700 * 17 15 13 21 21 C 1.46847 * 110.99728 * 239.27948 * 7 6 5 22 22 N 1.31221 * 107.05533 * 180.24413 * 6 5 4 23 23 N 1.28526 * 109.85835 * 359.56134 * 22 6 5 24 24 C 1.30296 * 110.05495 * 0.45248 * 23 22 6 25 25 C 1.50695 * 126.34636 * 179.69613 * 24 23 22 26 26 O 1.42904 * 115.54737 * 214.46078 * 25 24 23 27 27 C 1.52998 * 117.50559 * 68.78876 * 25 24 23 28 28 C 1.52997 * 117.50024 * 0.12318 * 25 24 23 29 29 H 1.08999 * 109.46967 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46967 * 300.00232 * 1 2 3 31 31 H 1.09004 * 109.46853 * 60.00129 * 1 2 3 32 32 H 1.08989 * 109.47385 * 60.00042 * 3 2 1 33 33 H 1.08994 * 109.46890 * 299.99694 * 3 2 1 34 34 H 1.09003 * 109.47283 * 59.99798 * 4 3 2 35 35 H 1.08998 * 109.47604 * 299.99743 * 4 3 2 36 36 H 1.08997 * 109.46279 * 65.82608 * 8 7 6 37 37 H 1.09003 * 109.46235 * 305.85970 * 8 7 6 38 38 H 1.08997 * 109.50240 * 180.88438 * 9 8 7 39 39 H 1.08996 * 109.53733 * 60.77771 * 9 8 7 40 40 H 1.08993 * 109.52925 * 297.75260 * 10 9 8 41 41 H 1.08998 * 109.57155 * 177.58834 * 10 9 8 42 42 H 0.97006 * 119.99799 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.49409 * 54.16107 * 21 7 6 44 44 H 1.09000 * 109.43153 * 294.19232 * 21 7 6 45 45 H 0.96700 * 113.99761 * 325.57540 * 26 25 24 46 46 H 1.09008 * 117.49268 * 359.97438 * 27 25 24 47 47 H 1.08999 * 117.50679 * 145.02101 * 27 25 24 48 48 H 1.09006 * 117.50168 * 214.98214 * 28 25 24 49 49 H 1.09000 * 117.49949 * 0.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 4.3926 3.3090 1.0831 7 7 4.1429 2.9928 2.4090 8 6 5.3949 2.8818 3.1683 9 6 5.0915 2.3911 4.5858 10 6 4.1433 3.3793 5.2707 11 6 2.8675 3.5133 4.4346 12 1 2.3618 2.5490 4.3851 13 6 1.9535 4.5287 5.0707 14 1 1.6619 5.4118 4.5215 15 6 1.4939 4.3330 6.3558 16 7 1.8489 3.2576 7.0245 17 14 0.3670 5.5953 7.1470 18 1 -1.0471 5.2491 6.8542 19 1 0.5818 5.5985 8.6164 20 1 0.6706 6.9420 6.5995 21 6 3.2346 3.9710 3.0211 22 7 4.9196 4.4232 0.6328 23 7 5.0102 4.3767 -0.6484 24 6 4.5414 3.2436 -1.0887 25 6 4.4648 2.8081 -2.5293 26 8 3.3338 2.0041 -2.8708 27 6 5.7823 2.5165 -3.2504 28 6 4.9869 3.7796 -3.5897 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8567 0.6439 -0.8909 35 1 3.8575 0.6437 0.8891 36 1 5.8776 3.8578 3.2174 37 1 6.0585 2.1730 2.6729 38 1 6.0193 2.3238 5.1539 39 1 4.6214 1.4088 4.5387 40 1 4.6284 4.3518 5.3536 41 1 3.8900 3.0126 6.2654 42 1 1.5253 3.1198 7.9285 43 1 2.3294 4.0531 2.4195 44 1 3.7272 4.9421 3.0702 45 1 3.0474 1.4082 -2.1651 46 1 6.7047 2.6400 -2.6828 47 1 5.7865 1.7117 -3.9855 48 1 4.4680 3.8052 -4.5480 49 1 5.3862 4.7335 -3.2453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646819612.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:57 Heat of formation + Delta-G solvation = 29.514388 kcal Electronic energy + Delta-G solvation = -30787.286989 eV Core-core repulsion = 26752.520279 eV Total energy + Delta-G solvation = -4034.766711 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -43.09745 -38.91119 -38.36883 -38.08477 -35.52123 -34.32480 -33.89596 -31.94511 -30.17861 -30.07509 -29.03121 -26.58774 -25.08893 -24.27778 -23.85277 -23.36142 -22.76443 -21.66720 -20.85903 -20.72866 -18.76234 -18.16503 -17.17796 -16.87232 -16.48304 -16.20846 -15.92217 -15.63120 -15.32031 -15.06832 -14.77916 -14.54096 -14.11905 -13.86025 -13.58632 -13.39641 -12.93974 -12.67931 -12.66767 -12.60349 -12.42984 -11.96675 -11.86546 -11.82382 -11.64752 -11.47594 -11.03254 -11.01589 -10.86936 -10.78779 -10.66772 -10.34033 -10.25427 -10.10110 -9.97374 -9.95132 -9.64254 -9.33158 -8.93854 -8.73545 -8.46333 -8.27272 -6.06178 -4.12591 1.53779 1.98443 2.74236 3.26775 3.33228 3.34061 3.37598 3.43451 3.49512 3.85348 4.07107 4.20333 4.40243 4.54464 4.57573 4.67433 4.81969 5.09446 5.15810 5.17019 5.23753 5.25891 5.26463 5.36163 5.40225 5.47181 5.52000 5.56637 5.65647 5.74139 5.83125 5.87978 5.92679 6.07283 6.27229 6.31181 6.45555 6.53615 6.61021 6.75399 6.77766 6.97027 6.99555 7.22861 7.31894 7.59415 7.67499 7.92431 8.04574 8.35077 8.71366 8.90319 9.52427 10.99833 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.003498 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.638968 B = 8003.557621 C = 8892.974831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.041 3.959 4 C 0.108 3.892 5 N -0.465 5.465 6 C 0.377 3.623 7 N -0.470 5.470 8 C 0.075 3.925 9 C -0.116 4.116 10 C -0.114 4.114 11 C 0.058 3.942 12 H 0.035 0.965 13 C -0.516 4.516 14 H 0.055 0.945 15 C 0.066 3.934 16 N -0.887 5.887 17 Si 0.891 3.109 18 H -0.281 1.281 19 H -0.286 1.286 20 H -0.274 1.274 21 C 0.080 3.920 22 N -0.307 5.307 23 N -0.267 5.267 24 C 0.173 3.827 25 C 0.127 3.873 26 O -0.521 6.521 27 C -0.176 4.176 28 C -0.126 4.126 29 H 0.091 0.909 30 H 0.050 0.950 31 H 0.043 0.957 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.098 0.902 35 H 0.120 0.880 36 H 0.047 0.953 37 H 0.059 0.941 38 H 0.056 0.944 39 H 0.063 0.937 40 H 0.036 0.964 41 H 0.096 0.904 42 H 0.261 0.739 43 H 0.058 0.942 44 H 0.043 0.957 45 H 0.378 0.622 46 H 0.104 0.896 47 H 0.110 0.890 48 H 0.110 0.890 49 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.084 -7.604 -16.982 19.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.303 6.303 3 C -0.036 4.036 4 C -0.016 4.016 5 N -0.160 5.160 6 C 0.022 3.978 7 N -0.197 5.197 8 C -0.052 4.052 9 C -0.154 4.154 10 C -0.152 4.152 11 C 0.039 3.961 12 H 0.053 0.947 13 C -0.555 4.555 14 H 0.073 0.927 15 C -0.136 4.136 16 N -0.526 5.526 17 Si 0.719 3.281 18 H -0.207 1.207 19 H -0.212 1.212 20 H -0.199 1.199 21 C -0.045 4.045 22 N -0.151 5.151 23 N -0.109 5.109 24 C -0.094 4.094 25 C 0.083 3.917 26 O -0.329 6.329 27 C -0.214 4.214 28 C -0.164 4.164 29 H 0.109 0.891 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.116 0.884 35 H 0.139 0.861 36 H 0.065 0.935 37 H 0.077 0.923 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.055 0.945 41 H 0.114 0.886 42 H 0.071 0.929 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.230 0.770 46 H 0.123 0.877 47 H 0.128 0.872 48 H 0.129 0.871 49 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.562 -6.645 -17.309 19.094 hybrid contribution -1.254 -0.069 1.071 1.650 sum 3.308 -6.714 -16.239 17.881 Atomic orbital electron populations 1.22821 0.79704 1.03181 1.00706 1.87774 1.20788 1.26154 1.95632 1.22824 0.92197 0.86138 1.02484 1.21642 0.92925 0.80663 1.06358 1.46178 1.47287 1.15990 1.06501 1.22813 0.98359 0.87188 0.89469 1.59017 1.15945 1.50340 0.94357 1.22124 0.87931 1.00317 0.94843 1.21714 0.99945 1.00948 0.92791 1.21704 0.94887 0.96083 1.02496 1.18699 0.93299 0.97372 0.86684 0.94657 1.21069 1.28540 1.06669 0.99244 0.92669 1.24900 0.96181 0.95439 0.97086 1.69876 1.44593 1.26418 1.11670 0.86603 0.81003 0.81950 0.78517 1.20714 1.21171 1.19876 1.22485 0.92562 0.91404 0.98077 1.74775 1.19429 1.18239 1.02612 1.73947 1.18012 1.15096 1.03808 1.23945 1.04350 0.91436 0.89649 1.18870 0.88713 1.00198 0.83929 1.86575 1.46721 1.55812 1.43761 1.23729 0.94493 1.00387 1.02810 1.23325 1.00022 0.95315 0.97752 0.89091 0.93144 0.93865 0.90697 0.92600 0.88427 0.86145 0.93494 0.92291 0.92526 0.91843 0.94539 0.88612 0.92935 0.92353 0.93824 0.77040 0.87717 0.87173 0.87147 0.86183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 11.01 101.05 1.11 1.41 16 2 O -0.39 -4.38 10.70 -35.23 -0.38 -4.75 16 3 C 0.04 0.48 5.75 37.16 0.21 0.69 16 4 C 0.11 1.22 5.65 -4.04 -0.02 1.19 16 5 N -0.46 -6.70 2.81 -114.09 -0.32 -7.02 16 6 C 0.38 6.61 6.43 -318.88 -2.05 4.56 16 7 N -0.47 -8.53 4.67 -174.55 -0.81 -9.35 16 8 C 0.07 1.29 5.40 -3.83 -0.02 1.27 16 9 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 10 C -0.11 -2.54 5.02 -26.60 -0.13 -2.67 16 11 C 0.06 1.39 2.26 -91.69 -0.21 1.18 16 12 H 0.04 0.91 8.14 -51.93 -0.42 0.49 16 13 C -0.52 -13.68 8.57 -34.44 -0.30 -13.97 16 14 H 0.06 1.47 7.74 -52.48 -0.41 1.06 16 15 C 0.07 1.75 5.30 -17.82 -0.09 1.66 16 16 N -0.89 -24.27 11.35 55.43 0.63 -23.64 16 17 Si 0.89 20.79 29.54 -169.99 -5.02 15.77 16 18 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 19 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.08 1.69 4.58 -3.83 -0.02 1.67 16 22 N -0.31 -5.89 12.17 30.31 0.37 -5.53 16 23 N -0.27 -4.65 11.76 32.99 0.39 -4.27 16 24 C 0.17 2.53 7.50 -154.01 -1.15 1.38 16 25 C 0.13 1.48 3.18 -91.78 -0.29 1.19 16 26 O -0.52 -5.94 13.82 -35.23 -0.49 -6.43 16 27 C -0.18 -1.61 10.19 -26.69 -0.27 -1.88 16 28 C -0.13 -1.25 10.10 -26.69 -0.27 -1.52 16 29 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 31 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.07 1.05 8.14 -51.94 -0.42 0.62 16 33 H 0.06 0.61 7.01 -51.93 -0.36 0.25 16 34 H 0.10 0.85 6.36 -51.93 -0.33 0.52 16 35 H 0.12 1.40 8.14 -51.93 -0.42 0.98 16 36 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 37 H 0.06 0.91 8.10 -51.93 -0.42 0.49 16 38 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 39 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 40 H 0.04 0.83 8.14 -51.93 -0.42 0.40 16 41 H 0.10 2.39 6.14 -51.93 -0.32 2.07 16 42 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 43 H 0.06 1.24 8.10 -51.93 -0.42 0.82 16 44 H 0.04 0.98 8.14 -51.93 -0.42 0.55 16 45 H 0.38 3.70 3.82 45.56 0.17 3.87 16 46 H 0.10 0.96 8.14 -51.92 -0.42 0.54 16 47 H 0.11 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 49 H 0.12 1.24 7.89 -51.93 -0.41 0.83 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -29.96 392.62 -10.93 -40.90 By element: Atomic # 1 Polarization: 12.05 SS G_CDS: -7.55 Total: 4.50 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -3.67 Total: -6.09 kcal Atomic # 7 Polarization: -50.05 SS G_CDS: 0.25 Total: -49.80 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: -0.86 Total: -11.18 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -29.96 -10.93 -40.90 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646819612.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.410 kcal (2) G-P(sol) polarization free energy of solvation -29.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.896 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds