Wall clock time and date at job start Tue Mar 31 2020 19:25:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.42905 * 113.99703 * 2 1 4 4 C 1.52998 * 109.46692 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47053 * 179.97438 * 4 3 2 6 6 C 1.36448 * 127.13895 * 85.71107 * 5 4 3 7 7 N 1.38579 * 126.47474 * 359.97438 * 6 5 4 8 8 C 1.46846 * 110.99948 * 115.02627 * 7 6 5 9 9 C 1.53039 * 109.52211 * 185.84564 * 8 7 6 10 10 C 1.53122 * 109.27499 * 300.81644 * 9 8 7 11 11 C 1.53123 * 109.15982 * 57.65970 * 10 9 8 12 12 H 1.09005 * 109.50611 * 62.32019 * 11 10 9 13 13 C 1.50697 * 109.50635 * 182.40233 * 11 10 9 14 14 H 1.08003 * 120.00289 * 119.91744 * 13 11 10 15 15 C 1.37875 * 119.99687 * 300.19647 * 13 11 10 16 16 N 1.31513 * 120.00071 * 359.72222 * 15 13 11 17 17 Si 1.86798 * 119.99844 * 179.72471 * 15 13 11 18 18 H 1.48505 * 109.47462 * 89.99725 * 17 15 13 19 19 H 1.48502 * 109.47314 * 209.99991 * 17 15 13 20 20 H 1.48507 * 109.47044 * 329.99700 * 17 15 13 21 21 C 1.46847 * 110.99728 * 239.27948 * 7 6 5 22 22 N 1.31221 * 107.05533 * 180.24413 * 6 5 4 23 23 N 1.28526 * 109.85835 * 359.56134 * 22 6 5 24 24 C 1.30296 * 110.05495 * 0.45248 * 23 22 6 25 25 C 1.50695 * 126.34636 * 179.69613 * 24 23 22 26 26 O 1.42904 * 115.54737 * 214.46078 * 25 24 23 27 27 C 1.52998 * 117.50559 * 68.78876 * 25 24 23 28 28 C 1.52997 * 117.50024 * 0.12318 * 25 24 23 29 29 H 1.08999 * 109.46967 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46967 * 300.00232 * 1 2 3 31 31 H 1.09004 * 109.46853 * 60.00129 * 1 2 3 32 32 H 1.08989 * 109.47385 * 60.00042 * 3 2 1 33 33 H 1.08994 * 109.46890 * 299.99694 * 3 2 1 34 34 H 1.09003 * 109.47283 * 59.99798 * 4 3 2 35 35 H 1.08998 * 109.47604 * 299.99743 * 4 3 2 36 36 H 1.08997 * 109.46279 * 65.82608 * 8 7 6 37 37 H 1.09003 * 109.46235 * 305.85970 * 8 7 6 38 38 H 1.08997 * 109.50240 * 180.88438 * 9 8 7 39 39 H 1.08996 * 109.53733 * 60.77771 * 9 8 7 40 40 H 1.08993 * 109.52925 * 297.75260 * 10 9 8 41 41 H 1.08998 * 109.57155 * 177.58834 * 10 9 8 42 42 H 0.97006 * 119.99799 * 180.02562 * 16 15 13 43 43 H 1.09000 * 109.49409 * 54.16107 * 21 7 6 44 44 H 1.09000 * 109.43153 * 294.19232 * 21 7 6 45 45 H 0.96700 * 113.99761 * 325.57540 * 26 25 24 46 46 H 1.09008 * 117.49268 * 359.97438 * 27 25 24 47 47 H 1.08999 * 117.50679 * 145.02101 * 27 25 24 48 48 H 1.09006 * 117.50168 * 214.98214 * 28 25 24 49 49 H 1.09000 * 117.49949 * 0.02562 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1313 2.5230 -0.0013 6 6 4.3926 3.3090 1.0831 7 7 4.1429 2.9928 2.4090 8 6 5.3949 2.8818 3.1683 9 6 5.0915 2.3911 4.5858 10 6 4.1433 3.3793 5.2707 11 6 2.8675 3.5133 4.4346 12 1 2.3618 2.5490 4.3851 13 6 1.9535 4.5287 5.0707 14 1 1.6619 5.4118 4.5215 15 6 1.4939 4.3330 6.3558 16 7 1.8489 3.2576 7.0245 17 14 0.3670 5.5953 7.1470 18 1 -1.0471 5.2491 6.8542 19 1 0.5818 5.5985 8.6164 20 1 0.6706 6.9420 6.5995 21 6 3.2346 3.9710 3.0211 22 7 4.9196 4.4232 0.6328 23 7 5.0102 4.3767 -0.6484 24 6 4.5414 3.2436 -1.0887 25 6 4.4648 2.8081 -2.5293 26 8 3.3338 2.0041 -2.8708 27 6 5.7823 2.5165 -3.2504 28 6 4.9869 3.7796 -3.5897 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 1.6887 1.8464 0.8899 33 1 1.6886 1.8463 -0.8900 34 1 3.8567 0.6439 -0.8909 35 1 3.8575 0.6437 0.8891 36 1 5.8776 3.8578 3.2174 37 1 6.0585 2.1730 2.6729 38 1 6.0193 2.3238 5.1539 39 1 4.6214 1.4088 4.5387 40 1 4.6284 4.3518 5.3536 41 1 3.8900 3.0126 6.2654 42 1 1.5253 3.1198 7.9285 43 1 2.3294 4.0531 2.4195 44 1 3.7272 4.9421 3.0702 45 1 3.0474 1.4082 -2.1651 46 1 6.7047 2.6400 -2.6828 47 1 5.7865 1.7117 -3.9855 48 1 4.4680 3.8052 -4.5480 49 1 5.3862 4.7335 -3.2453 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646819612.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:25:55 Heat of formation + Delta-G solvation = 11.554372 kcal Electronic energy + Delta-G solvation = -30788.065794 eV Core-core repulsion = 26752.520279 eV Total energy + Delta-G solvation = -4035.545515 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.34489 -40.13183 -39.54079 -39.04730 -36.59157 -35.69220 -35.21501 -33.65506 -31.87543 -31.17680 -30.37124 -27.41184 -27.03514 -25.62136 -25.08928 -24.44316 -23.51237 -23.33826 -22.12110 -21.83256 -20.40425 -19.27730 -18.61939 -18.13929 -17.54115 -17.48365 -17.21229 -16.76339 -16.56448 -16.16153 -16.04561 -15.68367 -15.57752 -15.24899 -14.69724 -14.55918 -14.48386 -14.30724 -14.17527 -13.58873 -13.56796 -13.36840 -12.90973 -12.89583 -12.77153 -12.73510 -12.63050 -12.44478 -12.38776 -11.98907 -11.93245 -11.86098 -11.84654 -11.47785 -11.45281 -11.14259 -11.05912 -10.85576 -10.76568 -10.43106 -9.99847 -9.86623 -8.11688 -6.25038 0.33087 0.84399 1.39725 1.41808 1.46563 1.51331 2.33336 2.43731 2.46735 2.64340 2.77331 3.04231 3.16187 3.27618 3.61915 3.70785 3.78761 3.87719 3.91545 4.03528 4.12941 4.17527 4.28128 4.35268 4.42239 4.46693 4.48248 4.51139 4.54620 4.62659 4.69976 4.74628 4.78200 4.82213 4.82973 4.93096 4.96921 5.03944 5.17300 5.25292 5.30793 5.46367 5.60969 5.67308 5.90429 5.96015 6.09447 6.13425 6.20748 6.35038 6.83560 7.42642 7.43207 8.92916 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.012849 B = 0.003498 C = 0.003148 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2178.638968 B = 8003.557621 C = 8892.974831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.392 6.392 3 C 0.050 3.950 4 C 0.105 3.895 5 N -0.457 5.457 6 C 0.362 3.638 7 N -0.463 5.463 8 C 0.078 3.922 9 C -0.104 4.104 10 C -0.107 4.107 11 C 0.062 3.938 12 H 0.009 0.991 13 C -0.540 4.540 14 H 0.046 0.954 15 C 0.023 3.977 16 N -0.908 5.908 17 Si 0.950 3.050 18 H -0.275 1.275 19 H -0.280 1.280 20 H -0.274 1.274 21 C 0.100 3.900 22 N -0.338 5.338 23 N -0.297 5.297 24 C 0.192 3.808 25 C 0.103 3.897 26 O -0.522 6.522 27 C -0.150 4.150 28 C -0.124 4.124 29 H 0.111 0.889 30 H 0.037 0.963 31 H 0.057 0.943 32 H 0.044 0.956 33 H 0.064 0.936 34 H 0.132 0.868 35 H 0.119 0.881 36 H 0.037 0.963 37 H 0.087 0.913 38 H 0.083 0.917 39 H 0.064 0.936 40 H 0.024 0.976 41 H 0.068 0.932 42 H 0.263 0.737 43 H 0.048 0.952 44 H 0.025 0.975 45 H 0.383 0.617 46 H 0.104 0.896 47 H 0.135 0.865 48 H 0.128 0.872 49 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.591 -8.896 -19.010 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.310 6.310 3 C -0.028 4.028 4 C -0.017 4.017 5 N -0.151 5.151 6 C 0.005 3.995 7 N -0.189 5.189 8 C -0.048 4.048 9 C -0.142 4.142 10 C -0.145 4.145 11 C 0.043 3.957 12 H 0.028 0.972 13 C -0.578 4.578 14 H 0.064 0.936 15 C -0.176 4.176 16 N -0.547 5.547 17 Si 0.776 3.224 18 H -0.201 1.201 19 H -0.206 1.206 20 H -0.198 1.198 21 C -0.027 4.027 22 N -0.182 5.182 23 N -0.137 5.137 24 C -0.075 4.075 25 C 0.059 3.941 26 O -0.331 6.331 27 C -0.189 4.189 28 C -0.162 4.162 29 H 0.130 0.870 30 H 0.056 0.944 31 H 0.076 0.924 32 H 0.062 0.938 33 H 0.083 0.917 34 H 0.150 0.850 35 H 0.137 0.863 36 H 0.055 0.945 37 H 0.105 0.895 38 H 0.101 0.899 39 H 0.083 0.917 40 H 0.043 0.957 41 H 0.087 0.913 42 H 0.072 0.928 43 H 0.067 0.933 44 H 0.044 0.956 45 H 0.236 0.764 46 H 0.123 0.877 47 H 0.153 0.847 48 H 0.147 0.853 49 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 5.068 -7.956 -19.347 21.525 hybrid contribution -1.448 0.298 1.613 2.188 sum 3.620 -7.658 -17.734 19.654 Atomic orbital electron populations 1.23012 0.78639 1.04613 1.00794 1.87760 1.21957 1.25647 1.95614 1.22650 0.92469 0.86271 1.01390 1.21879 0.92564 0.79242 1.07992 1.46255 1.46736 1.16672 1.05486 1.22631 0.99575 0.87846 0.89449 1.58911 1.16052 1.48912 0.95013 1.22133 0.87787 1.00484 0.94430 1.21595 0.99961 0.99432 0.93237 1.21511 0.95145 0.96573 1.01284 1.18563 0.93459 0.95339 0.88383 0.97250 1.21384 1.29543 1.07059 0.99839 0.93595 1.25578 0.97432 0.97128 0.97499 1.69988 1.45241 1.27596 1.11862 0.85689 0.79363 0.79678 0.77719 1.20101 1.20557 1.19838 1.22039 0.92759 0.91136 0.96717 1.74674 1.20376 1.19348 1.03776 1.73881 1.20025 1.16715 1.03121 1.24599 1.01777 0.90300 0.90866 1.19141 0.90454 1.02071 0.82414 1.86579 1.46795 1.55856 1.43831 1.23817 0.92780 1.00427 1.01850 1.23447 0.99868 0.95204 0.97672 0.87043 0.94422 0.92441 0.93788 0.91748 0.85038 0.86270 0.94506 0.89479 0.89868 0.91720 0.95710 0.91303 0.92822 0.93341 0.95611 0.76429 0.87737 0.84712 0.85348 0.87061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.44 11.01 113.37 1.25 1.69 16 2 O -0.39 -8.36 10.70 -148.98 -1.59 -9.96 16 3 C 0.05 1.13 5.75 71.98 0.41 1.54 16 4 C 0.11 2.21 5.65 86.38 0.49 2.70 16 5 N -0.46 -12.73 2.81 -514.86 -1.45 -14.18 16 6 C 0.36 12.68 6.43 260.11 1.67 14.35 16 7 N -0.46 -17.00 4.67 -706.15 -3.30 -20.30 16 8 C 0.08 2.65 5.40 86.33 0.47 3.12 16 9 C -0.10 -3.72 6.09 30.65 0.19 -3.53 16 10 C -0.11 -4.91 5.02 30.68 0.15 -4.75 16 11 C 0.06 3.04 2.26 -11.49 -0.03 3.02 16 12 H 0.01 0.51 8.14 -2.38 -0.02 0.49 16 13 C -0.54 -29.63 8.57 25.60 0.22 -29.41 16 14 H 0.05 2.54 7.74 -2.91 -0.02 2.51 16 15 C 0.02 1.27 5.30 84.65 0.45 1.72 16 16 N -0.91 -50.77 11.35 21.45 0.24 -50.53 16 17 Si 0.95 43.24 29.54 68.60 2.03 45.27 16 18 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 19 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 20 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 21 C 0.10 4.39 4.58 86.33 0.40 4.79 16 22 N -0.34 -13.11 12.17 -58.01 -0.71 -13.82 16 23 N -0.30 -10.25 11.76 -49.54 -0.58 -10.83 16 24 C 0.19 5.38 7.50 137.64 1.03 6.41 16 25 C 0.10 2.15 3.18 -11.54 -0.04 2.11 16 26 O -0.52 -10.33 13.82 -148.98 -2.06 -12.39 16 27 C -0.15 -2.23 10.19 30.62 0.31 -1.92 16 28 C -0.12 -2.13 10.10 30.62 0.31 -1.82 16 29 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 31 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.04 1.26 8.14 -2.39 -0.02 1.25 16 33 H 0.06 1.33 7.01 -2.39 -0.02 1.31 16 34 H 0.13 1.88 6.36 -2.39 -0.02 1.87 16 35 H 0.12 2.60 8.14 -2.39 -0.02 2.58 16 36 H 0.04 1.33 8.14 -2.39 -0.02 1.32 16 37 H 0.09 2.51 8.10 -2.39 -0.02 2.49 16 38 H 0.08 2.54 8.14 -2.39 -0.02 2.52 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.02 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.07 3.54 6.14 -2.39 -0.01 3.53 16 42 H 0.26 13.97 8.31 -92.70 -0.77 13.20 16 43 H 0.05 2.17 8.10 -2.39 -0.02 2.15 16 44 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 45 H 0.38 6.36 3.82 -74.06 -0.28 6.07 16 46 H 0.10 1.60 8.14 -2.38 -0.02 1.58 16 47 H 0.13 1.39 8.14 -2.39 -0.02 1.37 16 48 H 0.13 1.73 8.14 -2.38 -0.02 1.71 16 49 H 0.11 2.13 7.89 -2.39 -0.02 2.11 16 Total: -1.00 -66.53 392.62 0.53 -65.99 By element: Atomic # 1 Polarization: 20.07 SS G_CDS: 0.67 Total: 20.74 kcal Atomic # 6 Polarization: -7.28 SS G_CDS: 7.28 Total: 0.00 kcal Atomic # 7 Polarization: -103.87 SS G_CDS: -5.79 Total: -109.65 kcal Atomic # 8 Polarization: -18.69 SS G_CDS: -3.65 Total: -22.35 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Total: -66.53 0.53 -65.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646819612.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.549 kcal (2) G-P(sol) polarization free energy of solvation -66.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.995 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds