Wall clock time and date at job start Tue Mar 31 2020 19:27:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00288 * 2 1 4 4 C 1.52998 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47401 * 182.36498 * 4 3 2 6 6 C 1.36733 * 127.13518 * 93.48317 * 5 4 3 7 7 C 1.50693 * 126.35168 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47117 * 269.71512 * 7 6 5 9 9 H 1.08998 * 109.47346 * 54.99770 * 8 7 6 10 10 O 1.42899 * 109.47182 * 294.99899 * 8 7 6 11 11 C 1.50705 * 109.47523 * 174.99634 * 8 7 6 12 12 H 1.08001 * 119.99241 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00415 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99827 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00103 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.46976 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47112 * 120.00410 * 15 13 11 18 18 H 1.48503 * 109.47147 * 240.00449 * 15 13 11 19 19 N 1.30294 * 107.30286 * 179.73696 * 6 5 4 20 20 N 1.28529 * 110.05702 * 0.26111 * 19 6 5 21 21 C 1.31224 * 109.85759 * 0.02562 * 20 19 6 22 22 N 1.38577 * 126.47422 * 179.97438 * 21 20 19 23 23 C 1.47168 * 111.00039 * 273.78147 * 22 21 20 24 24 C 1.52986 * 108.59082 * 199.59014 * 23 22 21 25 25 C 1.52974 * 109.63663 * 305.87967 * 24 23 22 26 26 H 1.09008 * 115.39288 * 232.08702 * 25 24 23 27 27 C 1.53600 * 115.98860 * 89.09214 * 25 24 23 28 28 C 1.52365 * 59.74842 * 249.56755 * 27 25 24 29 29 H 1.08994 * 115.76578 * 253.07089 * 28 27 25 30 30 C 1.46740 * 110.99884 * 36.88287 * 22 21 20 31 31 H 1.09006 * 109.46908 * 59.99868 * 1 2 3 32 32 H 1.09000 * 109.47217 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47029 * 300.00047 * 1 2 3 34 34 H 1.09000 * 109.46887 * 59.99799 * 3 2 1 35 35 H 1.09001 * 109.47285 * 299.99857 * 3 2 1 36 36 H 1.09005 * 109.47041 * 62.36098 * 4 3 2 37 37 H 1.09003 * 109.47246 * 302.36903 * 4 3 2 38 38 H 1.09000 * 109.47585 * 149.71441 * 7 6 5 39 39 H 1.09006 * 109.47260 * 29.71125 * 7 6 5 40 40 H 0.96703 * 113.99690 * 299.99697 * 10 8 7 41 41 H 0.97004 * 120.00311 * 179.97438 * 14 13 11 42 42 H 1.08994 * 109.61773 * 319.32524 * 23 22 21 43 43 H 1.09002 * 109.61423 * 79.86567 * 23 22 21 44 44 H 1.09001 * 109.44722 * 185.82569 * 24 23 22 45 45 H 1.09003 * 109.41537 * 65.91243 * 24 23 22 46 46 H 1.08990 * 117.52534 * 142.14894 * 27 25 24 47 47 H 1.09007 * 117.51977 * 356.98466 * 27 25 24 48 48 H 1.09001 * 109.30035 * 300.47209 * 30 22 21 49 49 H 1.09000 * 109.30269 * 59.86078 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5218 0.0576 6 6 4.5235 3.2037 1.1760 7 6 4.4247 2.7178 2.5990 8 6 3.0784 3.1407 3.1900 9 1 2.2720 2.7810 2.5509 10 8 3.0210 4.5662 3.2724 11 6 2.9275 2.5513 4.5688 12 1 3.7136 1.9369 4.9823 13 6 1.7865 2.7972 5.3026 14 7 0.8296 3.5458 4.7992 15 14 1.5999 2.0672 7.0119 16 1 2.8078 1.2699 7.3442 17 1 1.4416 3.1616 8.0030 18 1 0.4021 1.1901 7.0475 19 7 5.0043 4.3491 0.7828 20 7 4.9380 4.4388 -0.4977 21 6 4.4064 3.3465 -0.9941 22 7 4.1741 3.0787 -2.3337 23 6 2.8730 3.6171 -2.7613 24 6 2.4467 2.9012 -4.0444 25 6 3.5574 3.0152 -5.0900 26 1 3.2455 3.3927 -6.0639 27 6 4.6188 1.9051 -5.0683 28 6 4.9811 3.3220 -4.6411 29 1 5.5967 3.8855 -5.3422 30 6 5.2502 3.6191 -3.1723 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6886 1.8463 0.8900 35 1 1.6887 1.8464 -0.8900 36 1 3.8604 0.6805 -0.9096 37 1 3.8539 0.6076 0.8689 38 1 5.2325 3.1519 3.1882 39 1 4.5046 1.6308 2.6182 40 1 3.7109 4.9561 3.8265 41 1 0.0266 3.7186 5.3154 42 1 2.1312 3.4439 -1.9818 43 1 2.9643 4.6864 -2.9521 44 1 1.5363 3.3597 -4.4305 45 1 2.2593 1.8495 -3.8273 46 1 5.0010 1.5549 -6.0270 47 1 4.5401 1.1482 -4.2878 48 1 5.3119 4.6978 -3.0284 49 1 6.1971 3.1650 -2.8804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646819703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:10 Heat of formation + Delta-G solvation = 18.800897 kcal Electronic energy + Delta-G solvation = -30873.197969 eV Core-core repulsion = 26837.966687 eV Total energy + Delta-G solvation = -4035.231282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.66501 -39.80168 -37.97064 -36.17852 -35.50080 -34.80039 -32.19551 -31.69796 -31.08315 -29.69365 -28.22359 -26.45775 -26.09588 -25.30845 -23.87369 -23.43333 -21.83170 -21.55639 -20.96541 -19.89628 -18.55856 -17.73701 -17.05679 -16.70298 -16.19270 -16.00487 -15.56875 -15.23051 -15.19907 -14.72590 -14.62959 -14.44137 -14.20005 -13.89325 -13.75899 -13.59487 -13.13972 -12.81190 -12.65437 -12.38338 -12.27355 -12.10403 -11.67765 -11.49650 -11.37744 -11.28217 -11.14939 -11.09908 -10.93002 -10.86319 -10.78224 -10.43431 -10.14650 -10.01303 -9.96957 -9.84890 -9.67636 -9.35139 -8.97546 -8.66068 -8.46703 -8.01122 -6.09100 -4.28486 2.01111 2.39410 3.22347 3.24835 3.31426 3.34435 3.43432 3.58143 4.04526 4.32423 4.36882 4.60022 4.67227 4.71823 4.86833 4.91509 4.97012 5.03591 5.13381 5.17794 5.18654 5.26352 5.32276 5.39792 5.43292 5.45405 5.50891 5.56280 5.62765 5.66447 5.69769 5.74332 5.77682 5.79094 5.88966 5.99212 6.07292 6.15128 6.25117 6.32559 6.41571 6.60968 6.66258 6.89982 7.05440 7.43753 7.55851 7.74567 8.04312 8.74171 9.16309 9.35116 9.50998 10.94882 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.003486 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.654949 B = 8029.495964 C = 9095.713142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.047 3.953 4 C 0.119 3.881 5 N -0.466 5.466 6 C 0.223 3.777 7 C -0.068 4.068 8 C 0.241 3.759 9 H 0.051 0.949 10 O -0.558 6.558 11 C -0.574 4.574 12 H 0.060 0.940 13 C 0.081 3.919 14 N -0.858 5.858 15 Si 0.890 3.110 16 H -0.271 1.271 17 H -0.282 1.282 18 H -0.283 1.283 19 N -0.285 5.285 20 N -0.313 5.313 21 C 0.325 3.675 22 N -0.454 5.454 23 C 0.059 3.941 24 C -0.083 4.083 25 C -0.148 4.148 26 H 0.103 0.897 27 C -0.168 4.168 28 C -0.144 4.144 29 H 0.109 0.891 30 C 0.099 3.901 31 H 0.039 0.961 32 H 0.087 0.913 33 H 0.049 0.951 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.102 0.898 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.350 0.650 41 H 0.260 0.740 42 H 0.075 0.925 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.075 0.925 46 H 0.089 0.911 47 H 0.101 0.899 48 H 0.063 0.937 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.911 -5.862 -18.334 19.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.031 4.031 4 C -0.005 4.005 5 N -0.161 5.161 6 C -0.044 4.044 7 C -0.108 4.108 8 C 0.182 3.818 9 H 0.068 0.932 10 O -0.361 6.361 11 C -0.612 4.612 12 H 0.078 0.922 13 C -0.126 4.126 14 N -0.493 5.493 15 Si 0.717 3.283 16 H -0.196 1.196 17 H -0.208 1.208 18 H -0.209 1.209 19 N -0.124 5.124 20 N -0.157 5.157 21 C -0.032 4.032 22 N -0.179 5.179 23 C -0.068 4.068 24 C -0.121 4.121 25 C -0.166 4.166 26 H 0.121 0.879 27 C -0.205 4.205 28 C -0.163 4.163 29 H 0.127 0.873 30 C -0.028 4.028 31 H 0.058 0.942 32 H 0.106 0.894 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.070 0.930 36 H 0.121 0.879 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.194 0.806 41 H 0.070 0.930 42 H 0.093 0.907 43 H 0.074 0.926 44 H 0.094 0.906 45 H 0.093 0.907 46 H 0.108 0.892 47 H 0.119 0.881 48 H 0.081 0.919 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 2.934 -5.199 -18.734 19.662 hybrid contribution -0.561 -0.667 1.251 1.525 sum 2.374 -5.867 -17.483 18.593 Atomic orbital electron populations 1.22765 0.80208 1.02761 1.00528 1.87746 1.20372 1.26733 1.95589 1.22840 0.92702 0.85633 1.01929 1.21466 0.92469 0.80789 1.05790 1.46103 1.47784 1.15616 1.06564 1.25354 0.97863 0.90008 0.91175 1.21292 1.04607 1.00746 0.84181 1.19298 0.87889 0.79919 0.94656 0.93160 1.86573 1.56125 1.21551 1.71808 1.21633 1.04085 1.33961 1.01493 0.92178 1.25021 0.95477 0.94041 0.98023 1.70089 1.06893 1.35246 1.37066 0.86593 0.78185 0.79067 0.84423 1.19563 1.20812 1.20913 1.74040 1.20094 1.15346 1.02939 1.74521 1.20100 1.17627 1.03433 1.22156 1.04423 0.88548 0.88026 1.58794 1.04381 1.58530 0.96215 1.22307 0.89032 0.97957 0.97506 1.21146 0.96724 1.01456 0.92730 1.22254 0.90108 1.04214 1.00042 0.87894 1.23085 1.03049 0.91869 1.02497 1.21991 0.98345 1.00016 0.95949 0.87339 1.21336 0.92916 0.99341 0.89182 0.94233 0.89447 0.93192 0.91201 0.93033 0.87934 0.87639 0.88968 0.90273 0.80586 0.92973 0.90680 0.92591 0.90646 0.90681 0.89217 0.88080 0.91862 0.89959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.39 -5.54 10.70 -35.23 -0.38 -5.92 16 3 C 0.05 0.69 6.26 37.16 0.23 0.92 16 4 C 0.12 1.69 6.42 -4.04 -0.03 1.66 16 5 N -0.47 -7.89 2.81 -114.08 -0.32 -8.21 16 6 C 0.22 4.37 7.09 -154.02 -1.09 3.28 16 7 C -0.07 -1.34 5.21 -27.89 -0.15 -1.48 16 8 C 0.24 5.81 2.81 -27.88 -0.08 5.74 16 9 H 0.05 1.33 6.61 -51.93 -0.34 0.98 16 10 O -0.56 -14.40 12.48 -35.23 -0.44 -14.84 16 11 C -0.57 -14.88 8.76 -34.44 -0.30 -15.18 16 12 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 13 C 0.08 2.17 5.40 -17.82 -0.10 2.08 16 14 N -0.86 -24.52 12.84 55.43 0.71 -23.81 16 15 Si 0.89 20.44 29.54 -169.99 -5.02 15.42 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 17 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 18 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 19 N -0.29 -6.10 12.18 32.99 0.40 -5.70 16 20 N -0.31 -6.20 11.58 30.32 0.35 -5.84 16 21 C 0.32 5.47 6.62 -318.87 -2.11 3.35 16 22 N -0.45 -6.01 4.47 -174.89 -0.78 -6.79 16 23 C 0.06 0.72 5.51 -3.68 -0.02 0.69 16 24 C -0.08 -0.76 6.09 -26.75 -0.16 -0.92 16 25 C -0.15 -1.27 6.27 -90.63 -0.57 -1.83 16 26 H 0.10 0.75 8.14 -51.92 -0.42 0.33 16 27 C -0.17 -1.43 9.78 -26.74 -0.26 -1.69 16 28 C -0.14 -1.33 6.08 -91.63 -0.56 -1.88 16 29 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 30 C 0.10 1.18 5.13 -4.29 -0.02 1.16 16 31 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.85 8.14 -51.93 -0.42 0.42 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 35 H 0.05 0.72 6.58 -51.93 -0.34 0.38 16 36 H 0.10 1.29 8.14 -51.93 -0.42 0.86 16 37 H 0.11 1.46 7.15 -51.93 -0.37 1.09 16 38 H 0.09 1.76 8.14 -51.93 -0.42 1.34 16 39 H 0.08 1.41 7.20 -51.93 -0.37 1.04 16 40 H 0.35 8.17 9.04 45.56 0.41 8.58 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.07 1.00 6.36 -51.93 -0.33 0.67 16 43 H 0.06 0.71 7.97 -51.93 -0.41 0.30 16 44 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 45 H 0.07 0.71 8.07 -51.93 -0.42 0.29 16 46 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 47 H 0.10 0.98 8.14 -51.92 -0.42 0.55 16 48 H 0.06 0.82 7.84 -51.93 -0.41 0.42 16 49 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 LS Contribution 395.38 15.07 5.96 5.96 Total: -1.00 -31.85 395.38 -10.74 -42.59 By element: Atomic # 1 Polarization: 16.86 SS G_CDS: -7.12 Total: 9.74 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: -4.10 Total: -2.59 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: 0.36 Total: -50.35 kcal Atomic # 8 Polarization: -19.95 SS G_CDS: -0.82 Total: -20.76 kcal Atomic # 14 Polarization: 20.44 SS G_CDS: -5.02 Total: 15.42 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -31.85 -10.74 -42.59 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646819703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.388 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.587 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds