Wall clock time and date at job start Tue Mar 31 2020 19:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42899 * 114.00288 * 2 1 4 4 C 1.52998 * 109.47411 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47401 * 182.36498 * 4 3 2 6 6 C 1.36733 * 127.13518 * 93.48317 * 5 4 3 7 7 C 1.50693 * 126.35168 * 0.02562 * 6 5 4 8 8 C 1.52996 * 109.47117 * 269.71512 * 7 6 5 9 9 H 1.08998 * 109.47346 * 54.99770 * 8 7 6 10 10 O 1.42899 * 109.47182 * 294.99899 * 8 7 6 11 11 C 1.50705 * 109.47523 * 174.99634 * 8 7 6 12 12 H 1.08001 * 119.99241 * 0.02562 * 11 8 7 13 13 C 1.37872 * 120.00415 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99827 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 120.00103 * 180.02562 * 13 11 8 16 16 H 1.48498 * 109.46976 * 0.02562 * 15 13 11 17 17 H 1.48497 * 109.47112 * 120.00410 * 15 13 11 18 18 H 1.48503 * 109.47147 * 240.00449 * 15 13 11 19 19 N 1.30294 * 107.30286 * 179.73696 * 6 5 4 20 20 N 1.28529 * 110.05702 * 0.26111 * 19 6 5 21 21 C 1.31224 * 109.85759 * 0.02562 * 20 19 6 22 22 N 1.38577 * 126.47422 * 179.97438 * 21 20 19 23 23 C 1.47168 * 111.00039 * 273.78147 * 22 21 20 24 24 C 1.52986 * 108.59082 * 199.59014 * 23 22 21 25 25 C 1.52974 * 109.63663 * 305.87967 * 24 23 22 26 26 H 1.09008 * 115.39288 * 232.08702 * 25 24 23 27 27 C 1.53600 * 115.98860 * 89.09214 * 25 24 23 28 28 C 1.52365 * 59.74842 * 249.56755 * 27 25 24 29 29 H 1.08994 * 115.76578 * 253.07089 * 28 27 25 30 30 C 1.46740 * 110.99884 * 36.88287 * 22 21 20 31 31 H 1.09006 * 109.46908 * 59.99868 * 1 2 3 32 32 H 1.09000 * 109.47217 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.47029 * 300.00047 * 1 2 3 34 34 H 1.09000 * 109.46887 * 59.99799 * 3 2 1 35 35 H 1.09001 * 109.47285 * 299.99857 * 3 2 1 36 36 H 1.09005 * 109.47041 * 62.36098 * 4 3 2 37 37 H 1.09003 * 109.47246 * 302.36903 * 4 3 2 38 38 H 1.09000 * 109.47585 * 149.71441 * 7 6 5 39 39 H 1.09006 * 109.47260 * 29.71125 * 7 6 5 40 40 H 0.96703 * 113.99690 * 299.99697 * 10 8 7 41 41 H 0.97004 * 120.00311 * 179.97438 * 14 13 11 42 42 H 1.08994 * 109.61773 * 319.32524 * 23 22 21 43 43 H 1.09002 * 109.61423 * 79.86567 * 23 22 21 44 44 H 1.09001 * 109.44722 * 185.82569 * 24 23 22 45 45 H 1.09003 * 109.41537 * 65.91243 * 24 23 22 46 46 H 1.08990 * 117.52534 * 142.14894 * 27 25 24 47 47 H 1.09007 * 117.51977 * 356.98466 * 27 25 24 48 48 H 1.09001 * 109.30035 * 300.47209 * 30 22 21 49 49 H 1.09000 * 109.30269 * 59.86078 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 4.1313 2.5218 0.0576 6 6 4.5235 3.2037 1.1760 7 6 4.4247 2.7178 2.5990 8 6 3.0784 3.1407 3.1900 9 1 2.2720 2.7810 2.5509 10 8 3.0210 4.5662 3.2724 11 6 2.9275 2.5513 4.5688 12 1 3.7136 1.9369 4.9823 13 6 1.7865 2.7972 5.3026 14 7 0.8296 3.5458 4.7992 15 14 1.5999 2.0672 7.0119 16 1 2.8078 1.2699 7.3442 17 1 1.4416 3.1616 8.0030 18 1 0.4021 1.1901 7.0475 19 7 5.0043 4.3491 0.7828 20 7 4.9380 4.4388 -0.4977 21 6 4.4064 3.3465 -0.9941 22 7 4.1741 3.0787 -2.3337 23 6 2.8730 3.6171 -2.7613 24 6 2.4467 2.9012 -4.0444 25 6 3.5574 3.0152 -5.0900 26 1 3.2455 3.3927 -6.0639 27 6 4.6188 1.9051 -5.0683 28 6 4.9811 3.3220 -4.6411 29 1 5.5967 3.8855 -5.3422 30 6 5.2502 3.6191 -3.1723 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 1.6886 1.8463 0.8900 35 1 1.6887 1.8464 -0.8900 36 1 3.8604 0.6805 -0.9096 37 1 3.8539 0.6076 0.8689 38 1 5.2325 3.1519 3.1882 39 1 4.5046 1.6308 2.6182 40 1 3.7109 4.9561 3.8265 41 1 0.0266 3.7186 5.3154 42 1 2.1312 3.4439 -1.9818 43 1 2.9643 4.6864 -2.9521 44 1 1.5363 3.3597 -4.4305 45 1 2.2593 1.8495 -3.8273 46 1 5.0010 1.5549 -6.0270 47 1 4.5401 1.1482 -4.2878 48 1 5.3119 4.6978 -3.0284 49 1 6.1971 3.1650 -2.8804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646819703.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:09 Heat of formation + Delta-G solvation = -1.240683 kcal Electronic energy + Delta-G solvation = -30874.067037 eV Core-core repulsion = 26837.966687 eV Total energy + Delta-G solvation = -4036.100351 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.09890 -40.69980 -39.12524 -38.02494 -36.58366 -36.12553 -34.25772 -32.95593 -32.34579 -30.94093 -29.83668 -27.63812 -27.21984 -26.92394 -24.82655 -24.68271 -23.55620 -22.50871 -22.09504 -21.40957 -19.48161 -19.17241 -18.66514 -17.94128 -17.46987 -17.17501 -16.81107 -16.64985 -16.40946 -16.19486 -16.09009 -15.69378 -15.55369 -15.38172 -15.05687 -14.67459 -14.58258 -14.26797 -13.73909 -13.42771 -13.30216 -13.25100 -13.00395 -12.91650 -12.82365 -12.80418 -12.64214 -12.44777 -12.35884 -12.26240 -12.01324 -11.72940 -11.69164 -11.26461 -11.22074 -10.90459 -10.82600 -10.71048 -10.68467 -10.49302 -10.09895 -9.56836 -8.14024 -6.39835 0.61416 1.08670 1.41161 1.43905 1.55036 1.75195 2.35892 2.39793 2.80494 2.89625 3.13400 3.43308 3.49290 3.55893 3.77175 3.87273 3.88571 3.89036 4.05640 4.07079 4.10214 4.18197 4.27952 4.30730 4.35274 4.39317 4.46480 4.47910 4.51425 4.59832 4.63395 4.73561 4.78489 4.80203 4.85184 4.89314 4.95131 5.00746 5.06596 5.14920 5.26112 5.37646 5.51490 5.58748 5.65057 5.70594 5.93856 6.02588 6.14856 6.71205 7.33484 7.53045 7.67654 8.90596 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015633 B = 0.003486 C = 0.003078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.654949 B = 8029.495964 C = 9095.713142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.059 3.941 4 C 0.118 3.882 5 N -0.463 5.463 6 C 0.211 3.789 7 C -0.052 4.052 8 C 0.244 3.756 9 H 0.021 0.979 10 O -0.579 6.579 11 C -0.580 4.580 12 H 0.070 0.930 13 C 0.028 3.972 14 N -0.900 5.900 15 Si 0.959 3.041 16 H -0.259 1.259 17 H -0.284 1.284 18 H -0.280 1.280 19 N -0.316 5.316 20 N -0.345 5.345 21 C 0.341 3.659 22 N -0.445 5.445 23 C 0.058 3.942 24 C -0.076 4.076 25 C -0.145 4.145 26 H 0.124 0.876 27 C -0.160 4.160 28 C -0.151 4.151 29 H 0.126 0.874 30 C 0.099 3.901 31 H 0.057 0.943 32 H 0.113 0.887 33 H 0.030 0.970 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.127 0.873 37 H 0.111 0.889 38 H 0.098 0.902 39 H 0.099 0.901 40 H 0.358 0.642 41 H 0.260 0.740 42 H 0.059 0.941 43 H 0.047 0.953 44 H 0.094 0.906 45 H 0.077 0.923 46 H 0.108 0.892 47 H 0.089 0.911 48 H 0.047 0.953 49 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.146 -7.766 -19.976 21.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.311 6.311 3 C -0.019 4.019 4 C -0.004 4.004 5 N -0.157 5.157 6 C -0.058 4.058 7 C -0.092 4.092 8 C 0.186 3.814 9 H 0.039 0.961 10 O -0.383 6.383 11 C -0.618 4.618 12 H 0.088 0.912 13 C -0.175 4.175 14 N -0.537 5.537 15 Si 0.784 3.216 16 H -0.182 1.182 17 H -0.210 1.210 18 H -0.206 1.206 19 N -0.155 5.155 20 N -0.189 5.189 21 C -0.016 4.016 22 N -0.171 5.171 23 C -0.069 4.069 24 C -0.114 4.114 25 C -0.163 4.163 26 H 0.142 0.858 27 C -0.197 4.197 28 C -0.169 4.169 29 H 0.144 0.856 30 C -0.028 4.028 31 H 0.076 0.924 32 H 0.131 0.869 33 H 0.048 0.952 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.145 0.855 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.203 0.797 41 H 0.069 0.931 42 H 0.078 0.922 43 H 0.066 0.934 44 H 0.112 0.888 45 H 0.096 0.904 46 H 0.127 0.873 47 H 0.108 0.892 48 H 0.065 0.935 49 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.182 -7.123 -20.382 21.824 hybrid contribution -0.670 -0.075 1.674 1.805 sum 2.513 -7.198 -18.708 20.202 Atomic orbital electron populations 1.22968 0.78911 1.04477 1.00453 1.87731 1.21784 1.26031 1.95545 1.22617 0.93121 0.85798 1.00389 1.21662 0.91934 0.79556 1.07259 1.46187 1.47347 1.16327 1.05871 1.25194 0.98682 0.90193 0.91688 1.20991 1.02035 1.01875 0.84311 1.19140 0.89351 0.79042 0.93916 0.96115 1.86527 1.56918 1.22684 1.72167 1.22017 1.04112 1.33519 1.02168 0.91184 1.25868 0.95218 0.94406 1.01972 1.70234 1.07571 1.37130 1.38742 0.85519 0.78477 0.78188 0.79462 1.18227 1.20973 1.20627 1.73939 1.21198 1.16371 1.03960 1.74448 1.22157 1.19282 1.03010 1.22577 1.02045 0.87544 0.89385 1.59088 1.05421 1.58190 0.94380 1.22376 0.87866 0.97981 0.98644 1.21146 0.97802 1.01253 0.91189 1.22360 0.89363 1.04097 1.00509 0.85830 1.23110 1.02576 0.91039 1.02947 1.21968 0.99562 1.01327 0.94054 0.85575 1.21372 0.92259 0.98249 0.90891 0.92426 0.86859 0.95169 0.95153 0.92156 0.85499 0.87097 0.88338 0.88289 0.79718 0.93123 0.92237 0.93431 0.88762 0.90434 0.87326 0.89202 0.93456 0.90578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 11.01 113.37 1.25 1.88 16 2 O -0.39 -10.93 10.70 -148.98 -1.59 -12.52 16 3 C 0.06 1.75 6.26 71.98 0.45 2.20 16 4 C 0.12 3.29 6.42 86.38 0.55 3.85 16 5 N -0.46 -15.77 2.81 -514.85 -1.45 -17.22 16 6 C 0.21 8.42 7.09 137.64 0.98 9.40 16 7 C -0.05 -2.07 5.21 29.84 0.16 -1.91 16 8 C 0.24 12.08 2.81 29.85 0.08 12.17 16 9 H 0.02 1.16 6.61 -2.39 -0.02 1.15 16 10 O -0.58 -30.95 12.48 -148.98 -1.86 -32.81 16 11 C -0.58 -30.24 8.76 25.60 0.22 -30.01 16 12 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 13 C 0.03 1.51 5.40 84.65 0.46 1.97 16 14 N -0.90 -52.72 12.84 21.44 0.28 -52.45 16 15 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 16 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 17 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 18 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 19 N -0.32 -13.89 12.18 -49.55 -0.60 -14.49 16 20 N -0.35 -14.04 11.58 -58.00 -0.67 -14.71 16 21 C 0.34 11.59 6.62 260.11 1.72 13.31 16 22 N -0.44 -11.50 4.47 -707.22 -3.16 -14.66 16 23 C 0.06 1.36 5.51 86.25 0.47 1.84 16 24 C -0.08 -1.22 6.09 30.58 0.19 -1.03 16 25 C -0.15 -2.03 6.27 -10.80 -0.07 -2.10 16 26 H 0.12 1.30 8.14 -2.38 -0.02 1.28 16 27 C -0.16 -2.23 9.78 30.59 0.30 -1.93 16 28 C -0.15 -2.42 6.08 -11.45 -0.07 -2.49 16 29 H 0.13 1.62 8.14 -2.39 -0.02 1.60 16 30 C 0.10 2.28 5.13 86.08 0.44 2.73 16 31 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 32 H 0.11 1.98 8.14 -2.39 -0.02 1.96 16 33 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.03 1.15 6.61 -2.39 -0.02 1.14 16 35 H 0.06 1.67 6.58 -2.39 -0.02 1.65 16 36 H 0.13 2.93 8.14 -2.38 -0.02 2.91 16 37 H 0.11 2.98 7.15 -2.39 -0.02 2.96 16 38 H 0.10 3.76 8.14 -2.39 -0.02 3.74 16 39 H 0.10 3.47 7.20 -2.38 -0.02 3.45 16 40 H 0.36 17.28 9.04 -74.06 -0.67 16.61 16 41 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 42 H 0.06 1.58 6.36 -2.39 -0.02 1.56 16 43 H 0.05 1.20 7.97 -2.39 -0.02 1.18 16 44 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 45 H 0.08 1.24 8.07 -2.39 -0.02 1.22 16 46 H 0.11 1.14 8.14 -2.39 -0.02 1.12 16 47 H 0.09 1.49 8.14 -2.38 -0.02 1.47 16 48 H 0.05 1.24 7.84 -2.39 -0.02 1.23 16 49 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 Total: -1.00 -70.26 395.38 0.40 -69.86 By element: Atomic # 1 Polarization: 34.79 SS G_CDS: 0.29 Total: 35.08 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: 7.14 Total: 9.86 kcal Atomic # 7 Polarization: -107.92 SS G_CDS: -5.61 Total: -113.53 kcal Atomic # 8 Polarization: -41.88 SS G_CDS: -3.45 Total: -45.33 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -70.26 0.40 -69.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646819703.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.622 kcal (2) G-P(sol) polarization free energy of solvation -70.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds