Wall clock time and date at job start Tue Mar 31 2020 19:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00028 * 2 1 4 4 C 1.52998 * 109.47548 * 180.02562 * 3 2 1 5 5 N 1.46489 * 109.47513 * 182.36794 * 4 3 2 6 6 C 1.36747 * 127.13769 * 93.49552 * 5 4 3 7 7 C 1.50698 * 126.34222 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47069 * 269.70801 * 7 6 5 9 9 H 1.09003 * 109.46537 * 55.00824 * 8 7 6 10 10 O 1.42900 * 109.47414 * 295.00455 * 8 7 6 11 11 C 1.50698 * 109.47121 * 175.00038 * 8 7 6 12 12 H 1.08008 * 120.00172 * 359.73430 * 11 8 7 13 13 C 1.37876 * 120.00412 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99441 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00316 * 180.02562 * 13 11 8 16 16 H 1.48508 * 109.47208 * 90.00180 * 15 13 11 17 17 H 1.48497 * 109.47404 * 209.99887 * 15 13 11 18 18 H 1.48492 * 109.47257 * 330.00340 * 15 13 11 19 19 N 1.30289 * 107.30533 * 179.73517 * 6 5 4 20 20 N 1.28528 * 110.05732 * 0.26648 * 19 6 5 21 21 C 1.31219 * 109.85641 * 359.97438 * 20 19 6 22 22 N 1.38590 * 126.47137 * 180.02562 * 21 20 19 23 23 C 1.47160 * 111.00083 * 273.80038 * 22 21 20 24 24 C 1.52095 * 109.49913 * 198.67132 * 23 22 21 25 25 C 1.52380 * 110.31657 * 306.92811 * 24 23 22 26 26 H 1.09005 * 114.41941 * 164.07882 * 25 24 23 27 27 C 1.50898 * 119.18358 * 308.97941 * 25 24 23 28 28 C 1.52405 * 118.99242 * 19.80549 * 25 24 23 29 29 H 1.08998 * 117.38454 * 143.73029 * 28 25 24 30 30 C 1.46747 * 110.99745 * 36.88499 * 22 21 20 31 31 H 1.09010 * 109.46921 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47323 * 299.99678 * 1 2 3 33 33 H 1.08997 * 109.47176 * 60.00623 * 1 2 3 34 34 H 1.08994 * 109.46952 * 59.99637 * 3 2 1 35 35 H 1.09004 * 109.46659 * 299.99828 * 3 2 1 36 36 H 1.08999 * 109.47152 * 62.36019 * 4 3 2 37 37 H 1.08999 * 109.46544 * 302.37166 * 4 3 2 38 38 H 1.09009 * 109.47092 * 149.71337 * 7 6 5 39 39 H 1.09003 * 109.47552 * 29.71510 * 7 6 5 40 40 H 0.96702 * 113.99827 * 299.99614 * 10 8 7 41 41 H 0.97004 * 120.00035 * 180.02562 * 14 13 11 42 42 H 1.09005 * 109.61113 * 319.32420 * 23 22 21 43 43 H 1.08999 * 109.61492 * 79.85368 * 23 22 21 44 44 H 1.08999 * 110.14730 * 186.07212 * 24 23 22 45 45 H 1.09000 * 108.19590 * 66.54891 * 24 23 22 46 46 H 1.09005 * 117.26904 * 1.26780 * 27 25 24 47 47 H 1.08998 * 117.63061 * 216.40212 * 27 25 24 48 48 H 1.09000 * 109.35823 * 300.72984 * 30 22 21 49 49 H 1.08999 * 109.36598 * 60.46072 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5218 0.0564 6 6 4.5246 3.2033 1.1748 7 6 4.4271 2.7165 2.5976 8 6 3.0813 3.1392 3.1903 9 1 2.2743 2.7797 2.5517 10 8 3.0240 4.5646 3.2735 11 6 2.9319 2.5490 4.5688 12 1 3.7164 1.9304 4.9794 13 6 1.7913 2.7937 5.3036 14 7 0.8334 3.5418 4.8012 15 14 1.6064 2.0627 7.0126 16 1 2.1571 3.0075 8.0174 17 1 0.1685 1.8222 7.2953 18 1 2.3466 0.7774 7.0840 19 7 5.0049 4.3489 0.7817 20 7 4.9372 4.4392 -0.4986 21 6 4.4061 3.3468 -0.9951 22 7 4.1736 3.0792 -2.3349 23 6 2.8723 3.6174 -2.7621 24 6 2.4390 2.9350 -4.0505 25 6 3.5403 3.0356 -5.0988 26 1 3.4265 2.3508 -5.9392 27 6 4.1475 4.3836 -5.4011 28 6 4.9664 3.3258 -4.6464 29 1 5.7743 2.8361 -5.1901 30 6 5.2493 3.6204 -3.1736 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.6885 1.8463 0.8899 35 1 1.6886 1.8463 -0.8901 36 1 3.8596 0.6810 -0.9112 37 1 3.8545 0.6074 0.8671 38 1 5.2356 3.1504 3.1863 39 1 4.5071 1.6296 2.6162 40 1 3.7145 4.9543 3.8272 41 1 0.0310 3.7143 5.3183 42 1 2.1307 3.4437 -1.9823 43 1 2.9633 4.6867 -2.9525 44 1 1.5307 3.3995 -4.4342 45 1 2.2435 1.8854 -3.8307 46 1 3.7790 5.2365 -4.8310 47 1 4.4249 4.5929 -6.4341 48 1 5.3142 4.6985 -3.0267 49 1 6.1954 3.1594 -2.8900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646819705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:14 Heat of formation + Delta-G solvation = 18.979783 kcal Electronic energy + Delta-G solvation = -30811.335676 eV Core-core repulsion = 26776.112151 eV Total energy + Delta-G solvation = -4035.223525 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.66685 -39.97480 -37.96596 -36.18923 -35.54852 -34.79597 -32.19347 -31.71482 -31.09579 -29.68872 -28.21766 -26.42888 -26.05584 -25.31329 -24.14770 -23.42259 -21.90972 -21.43211 -20.98065 -19.85816 -18.56114 -17.61992 -17.01614 -16.68800 -16.22672 -16.09511 -15.76093 -15.37706 -15.10187 -14.73513 -14.60774 -14.28218 -14.20918 -14.04001 -13.76418 -13.60363 -13.05338 -12.90817 -12.78212 -12.64165 -12.26375 -11.74940 -11.54625 -11.53681 -11.37405 -11.27732 -11.15765 -11.07535 -10.98440 -10.90011 -10.79141 -10.47398 -10.18427 -10.08633 -10.03554 -9.84580 -9.67187 -9.33581 -8.95126 -8.65859 -8.46477 -8.01058 -6.08822 -4.28264 2.01123 2.38971 3.23661 3.24705 3.31150 3.33385 3.37130 3.66704 4.05723 4.32571 4.39527 4.49539 4.64640 4.73516 4.79756 4.88614 4.95388 4.98283 5.04312 5.18762 5.20913 5.29749 5.32765 5.34611 5.42928 5.45776 5.51386 5.55937 5.57141 5.67951 5.68912 5.72561 5.78593 5.86637 5.89953 5.94514 5.95798 6.14886 6.25288 6.32926 6.41815 6.60362 6.64899 6.90197 7.05962 7.44045 7.56166 7.74465 8.04528 8.74098 9.16330 9.35252 9.51122 10.95150 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015560 B = 0.003437 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.025030 B = 8143.693088 C = 9197.529564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.386 6.386 3 C 0.047 3.953 4 C 0.118 3.882 5 N -0.466 5.466 6 C 0.223 3.777 7 C -0.068 4.068 8 C 0.242 3.758 9 H 0.051 0.949 10 O -0.558 6.558 11 C -0.574 4.574 12 H 0.059 0.941 13 C 0.081 3.919 14 N -0.858 5.858 15 Si 0.891 3.109 16 H -0.278 1.278 17 H -0.286 1.286 18 H -0.273 1.273 19 N -0.285 5.285 20 N -0.313 5.313 21 C 0.324 3.676 22 N -0.451 5.451 23 C 0.057 3.943 24 C -0.085 4.085 25 C -0.130 4.130 26 H 0.102 0.898 27 C -0.181 4.181 28 C -0.149 4.149 29 H 0.112 0.888 30 C 0.099 3.901 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.039 0.961 34 H 0.070 0.930 35 H 0.051 0.949 36 H 0.103 0.897 37 H 0.105 0.895 38 H 0.092 0.908 39 H 0.079 0.921 40 H 0.350 0.650 41 H 0.261 0.739 42 H 0.077 0.923 43 H 0.051 0.949 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.062 0.938 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.728 -5.300 -18.477 19.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.304 6.304 3 C -0.031 4.031 4 C -0.006 4.006 5 N -0.160 5.160 6 C -0.044 4.044 7 C -0.108 4.108 8 C 0.183 3.817 9 H 0.068 0.932 10 O -0.361 6.361 11 C -0.612 4.612 12 H 0.078 0.922 13 C -0.126 4.126 14 N -0.493 5.493 15 Si 0.718 3.282 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.197 1.197 19 N -0.124 5.124 20 N -0.157 5.157 21 C -0.032 4.032 22 N -0.176 5.176 23 C -0.070 4.070 24 C -0.123 4.123 25 C -0.149 4.149 26 H 0.120 0.880 27 C -0.218 4.218 28 C -0.167 4.167 29 H 0.130 0.870 30 C -0.028 4.028 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.088 0.912 35 H 0.069 0.931 36 H 0.122 0.878 37 H 0.124 0.876 38 H 0.110 0.890 39 H 0.097 0.903 40 H 0.194 0.806 41 H 0.071 0.929 42 H 0.095 0.905 43 H 0.069 0.931 44 H 0.096 0.904 45 H 0.094 0.906 46 H 0.113 0.887 47 H 0.113 0.887 48 H 0.081 0.919 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 2.745 -4.635 -18.873 19.626 hybrid contribution -0.548 -0.699 1.260 1.542 sum 2.196 -5.334 -17.613 18.533 Atomic orbital electron populations 1.22764 0.80221 1.02762 1.00520 1.87748 1.20362 1.26731 1.95586 1.22838 0.92717 0.85629 1.01905 1.21471 0.92461 0.80773 1.05851 1.46105 1.47745 1.15639 1.06559 1.25360 0.97843 0.90018 0.91179 1.21297 1.04614 1.00747 0.84179 1.19292 0.87897 0.79913 0.94620 0.93160 1.86571 1.56064 1.21567 1.71862 1.21595 1.04187 1.33870 1.01577 0.92230 1.25021 0.95434 0.94078 0.98018 1.70079 1.06891 1.35291 1.37046 0.86643 0.77333 0.79663 0.84588 1.20404 1.21166 1.19730 1.74036 1.20102 1.15348 1.02934 1.74518 1.20127 1.17629 1.03444 1.22176 1.04449 0.88549 0.88047 1.58797 1.04238 1.58430 0.96131 1.22130 0.89340 0.97913 0.97627 1.20826 0.96912 1.01973 0.92545 1.21594 0.93600 0.99217 1.00446 0.87951 1.22982 1.04320 0.93226 1.01309 1.22313 0.95396 1.04113 0.94891 0.87017 1.21549 0.92957 0.99242 0.89064 0.89448 0.93202 0.94229 0.91204 0.93056 0.87838 0.87635 0.88963 0.90261 0.80582 0.92917 0.90461 0.93069 0.90433 0.90611 0.88698 0.88675 0.91947 0.89949 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 11.01 101.05 1.11 1.51 16 2 O -0.39 -5.56 10.70 -35.23 -0.38 -5.94 16 3 C 0.05 0.70 6.26 37.16 0.23 0.93 16 4 C 0.12 1.70 6.42 -4.05 -0.03 1.67 16 5 N -0.47 -7.94 2.81 -114.09 -0.32 -8.26 16 6 C 0.22 4.39 7.09 -154.01 -1.09 3.29 16 7 C -0.07 -1.34 5.21 -27.88 -0.15 -1.49 16 8 C 0.24 5.83 2.81 -27.88 -0.08 5.75 16 9 H 0.05 1.33 6.61 -51.93 -0.34 0.99 16 10 O -0.56 -14.42 12.49 -35.23 -0.44 -14.86 16 11 C -0.57 -14.90 8.76 -34.44 -0.30 -15.20 16 12 H 0.06 1.49 7.74 -52.48 -0.41 1.08 16 13 C 0.08 2.18 5.40 -17.82 -0.10 2.08 16 14 N -0.86 -24.54 12.84 55.43 0.71 -23.83 16 15 Si 0.89 20.46 29.54 -169.99 -5.02 15.44 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 N -0.29 -6.12 12.18 32.99 0.40 -5.71 16 20 N -0.31 -6.23 11.57 30.32 0.35 -5.88 16 21 C 0.32 5.50 6.62 -318.86 -2.11 3.39 16 22 N -0.45 -6.07 4.67 -175.06 -0.82 -6.89 16 23 C 0.06 0.69 5.25 -4.14 -0.02 0.67 16 24 C -0.08 -0.78 6.17 -27.51 -0.17 -0.95 16 25 C -0.13 -1.11 6.08 -92.30 -0.56 -1.67 16 26 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 27 C -0.18 -1.51 9.58 -27.48 -0.26 -1.77 16 28 C -0.15 -1.37 6.37 -90.70 -0.58 -1.95 16 29 H 0.11 0.89 8.14 -51.93 -0.42 0.46 16 30 C 0.10 1.19 5.07 -3.99 -0.02 1.17 16 31 H 0.09 0.85 8.14 -51.92 -0.42 0.43 16 32 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.04 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 1.26 6.61 -51.93 -0.34 0.92 16 35 H 0.05 0.72 6.58 -51.93 -0.34 0.37 16 36 H 0.10 1.32 8.14 -51.93 -0.42 0.89 16 37 H 0.11 1.47 7.15 -51.93 -0.37 1.10 16 38 H 0.09 1.76 8.14 -51.92 -0.42 1.34 16 39 H 0.08 1.41 7.20 -51.93 -0.37 1.04 16 40 H 0.35 8.18 9.04 45.56 0.41 8.59 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.08 1.03 6.36 -51.93 -0.33 0.70 16 43 H 0.05 0.65 7.00 -51.93 -0.36 0.28 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.09 0.87 7.24 -51.93 -0.38 0.50 16 47 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 48 H 0.06 0.83 7.76 -51.93 -0.40 0.42 16 49 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 393.38 15.07 5.93 5.93 Total: -1.00 -31.98 393.38 -10.73 -42.71 By element: Atomic # 1 Polarization: 16.87 SS G_CDS: -7.03 Total: 9.85 kcal Atomic # 6 Polarization: 1.56 SS G_CDS: -4.12 Total: -2.56 kcal Atomic # 7 Polarization: -50.90 SS G_CDS: 0.33 Total: -50.57 kcal Atomic # 8 Polarization: -19.98 SS G_CDS: -0.82 Total: -20.80 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -31.98 -10.73 -42.71 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646819705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.693 kcal (2) G-P(sol) polarization free energy of solvation -31.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.980 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds