Wall clock time and date at job start Tue Mar 31 2020 19:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42901 * 114.00028 * 2 1 4 4 C 1.52998 * 109.47548 * 180.02562 * 3 2 1 5 5 N 1.46489 * 109.47513 * 182.36794 * 4 3 2 6 6 C 1.36747 * 127.13769 * 93.49552 * 5 4 3 7 7 C 1.50698 * 126.34222 * 0.02562 * 6 5 4 8 8 C 1.53002 * 109.47069 * 269.70801 * 7 6 5 9 9 H 1.09003 * 109.46537 * 55.00824 * 8 7 6 10 10 O 1.42900 * 109.47414 * 295.00455 * 8 7 6 11 11 C 1.50698 * 109.47121 * 175.00038 * 8 7 6 12 12 H 1.08008 * 120.00172 * 359.73430 * 11 8 7 13 13 C 1.37876 * 120.00412 * 180.02562 * 11 8 7 14 14 N 1.31514 * 119.99441 * 0.02562 * 13 11 8 15 15 Si 1.86795 * 120.00316 * 180.02562 * 13 11 8 16 16 H 1.48508 * 109.47208 * 90.00180 * 15 13 11 17 17 H 1.48497 * 109.47404 * 209.99887 * 15 13 11 18 18 H 1.48492 * 109.47257 * 330.00340 * 15 13 11 19 19 N 1.30289 * 107.30533 * 179.73517 * 6 5 4 20 20 N 1.28528 * 110.05732 * 0.26648 * 19 6 5 21 21 C 1.31219 * 109.85641 * 359.97438 * 20 19 6 22 22 N 1.38590 * 126.47137 * 180.02562 * 21 20 19 23 23 C 1.47160 * 111.00083 * 273.80038 * 22 21 20 24 24 C 1.52095 * 109.49913 * 198.67132 * 23 22 21 25 25 C 1.52380 * 110.31657 * 306.92811 * 24 23 22 26 26 H 1.09005 * 114.41941 * 164.07882 * 25 24 23 27 27 C 1.50898 * 119.18358 * 308.97941 * 25 24 23 28 28 C 1.52405 * 118.99242 * 19.80549 * 25 24 23 29 29 H 1.08998 * 117.38454 * 143.73029 * 28 25 24 30 30 C 1.46747 * 110.99745 * 36.88499 * 22 21 20 31 31 H 1.09010 * 109.46921 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47323 * 299.99678 * 1 2 3 33 33 H 1.08997 * 109.47176 * 60.00623 * 1 2 3 34 34 H 1.08994 * 109.46952 * 59.99637 * 3 2 1 35 35 H 1.09004 * 109.46659 * 299.99828 * 3 2 1 36 36 H 1.08999 * 109.47152 * 62.36019 * 4 3 2 37 37 H 1.08999 * 109.46544 * 302.37166 * 4 3 2 38 38 H 1.09009 * 109.47092 * 149.71337 * 7 6 5 39 39 H 1.09003 * 109.47552 * 29.71510 * 7 6 5 40 40 H 0.96702 * 113.99827 * 299.99614 * 10 8 7 41 41 H 0.97004 * 120.00035 * 180.02562 * 14 13 11 42 42 H 1.09005 * 109.61113 * 319.32420 * 23 22 21 43 43 H 1.08999 * 109.61492 * 79.85368 * 23 22 21 44 44 H 1.08999 * 110.14730 * 186.07212 * 24 23 22 45 45 H 1.09000 * 108.19590 * 66.54891 * 24 23 22 46 46 H 1.09005 * 117.26904 * 1.26780 * 27 25 24 47 47 H 1.08998 * 117.63061 * 216.40212 * 27 25 24 48 48 H 1.09000 * 109.35823 * 300.72984 * 30 22 21 49 49 H 1.08999 * 109.36598 * 60.46072 * 30 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5218 0.0564 6 6 4.5246 3.2033 1.1748 7 6 4.4271 2.7165 2.5976 8 6 3.0813 3.1392 3.1903 9 1 2.2743 2.7797 2.5517 10 8 3.0240 4.5646 3.2735 11 6 2.9319 2.5490 4.5688 12 1 3.7164 1.9304 4.9794 13 6 1.7913 2.7937 5.3036 14 7 0.8334 3.5418 4.8012 15 14 1.6064 2.0627 7.0126 16 1 2.1571 3.0075 8.0174 17 1 0.1685 1.8222 7.2953 18 1 2.3466 0.7774 7.0840 19 7 5.0049 4.3489 0.7817 20 7 4.9372 4.4392 -0.4986 21 6 4.4061 3.3468 -0.9951 22 7 4.1736 3.0792 -2.3349 23 6 2.8723 3.6174 -2.7621 24 6 2.4390 2.9350 -4.0505 25 6 3.5403 3.0356 -5.0988 26 1 3.4265 2.3508 -5.9392 27 6 4.1475 4.3836 -5.4011 28 6 4.9664 3.3258 -4.6464 29 1 5.7743 2.8361 -5.1901 30 6 5.2493 3.6204 -3.1736 31 1 -0.3633 -1.0278 0.0005 32 1 -0.3634 0.5137 0.8900 33 1 -0.3633 0.5137 -0.8900 34 1 1.6885 1.8463 0.8899 35 1 1.6886 1.8463 -0.8901 36 1 3.8596 0.6810 -0.9112 37 1 3.8545 0.6074 0.8671 38 1 5.2356 3.1504 3.1863 39 1 4.5071 1.6296 2.6162 40 1 3.7145 4.9543 3.8272 41 1 0.0310 3.7143 5.3183 42 1 2.1307 3.4437 -1.9823 43 1 2.9633 4.6867 -2.9525 44 1 1.5307 3.3995 -4.4342 45 1 2.2435 1.8854 -3.8307 46 1 3.7790 5.2365 -4.8310 47 1 4.4249 4.5929 -6.4341 48 1 5.3142 4.6985 -3.0267 49 1 6.1954 3.1594 -2.8900 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001646819705.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:13 Heat of formation + Delta-G solvation = -1.395344 kcal Electronic energy + Delta-G solvation = -30812.219208 eV Core-core repulsion = 26776.112151 eV Total energy + Delta-G solvation = -4036.107057 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -44.10457 -40.86367 -39.12141 -38.02929 -36.64757 -36.13294 -34.25696 -32.95172 -32.38071 -30.93943 -29.84022 -27.60982 -27.21043 -26.87899 -25.10677 -24.67318 -23.58321 -22.42380 -22.18747 -21.35425 -19.48591 -19.13546 -18.57296 -17.88326 -17.46203 -17.22811 -16.90149 -16.65790 -16.45004 -16.37982 -16.15928 -15.63549 -15.55778 -15.31343 -14.98564 -14.76113 -14.60518 -14.25380 -13.75594 -13.64217 -13.41860 -13.25279 -12.99293 -12.86751 -12.79885 -12.65283 -12.47537 -12.43535 -12.35542 -12.32096 -12.02879 -11.85481 -11.65954 -11.26660 -11.25029 -11.03517 -10.82663 -10.76608 -10.68568 -10.45861 -10.07847 -9.57683 -8.13844 -6.39724 0.60920 1.08238 1.42655 1.43853 1.53768 1.74624 2.32202 2.39836 2.80381 2.98279 3.13506 3.43462 3.50410 3.58093 3.71351 3.78033 3.83202 3.94516 3.96609 4.02145 4.09965 4.17383 4.20444 4.27940 4.36072 4.40422 4.43199 4.48480 4.51432 4.57305 4.71405 4.71975 4.77356 4.78952 4.83616 4.88973 4.95576 4.99926 5.09831 5.17599 5.19247 5.30461 5.49352 5.57939 5.60835 5.70344 5.94293 6.02599 6.14489 6.71040 7.33487 7.52993 7.67181 8.90607 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015560 B = 0.003437 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1799.025030 B = 8143.693088 C = 9197.529564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.393 6.393 3 C 0.059 3.941 4 C 0.118 3.882 5 N -0.463 5.463 6 C 0.211 3.789 7 C -0.052 4.052 8 C 0.244 3.756 9 H 0.021 0.979 10 O -0.579 6.579 11 C -0.581 4.581 12 H 0.070 0.930 13 C 0.028 3.972 14 N -0.900 5.900 15 Si 0.959 3.041 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.260 1.260 19 N -0.316 5.316 20 N -0.346 5.346 21 C 0.340 3.660 22 N -0.443 5.443 23 C 0.056 3.944 24 C -0.079 4.079 25 C -0.125 4.125 26 H 0.125 0.875 27 C -0.176 4.176 28 C -0.155 4.155 29 H 0.131 0.869 30 C 0.098 3.902 31 H 0.113 0.887 32 H 0.029 0.971 33 H 0.057 0.943 34 H 0.030 0.970 35 H 0.060 0.940 36 H 0.128 0.872 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.099 0.901 40 H 0.358 0.642 41 H 0.260 0.740 42 H 0.061 0.939 43 H 0.042 0.958 44 H 0.095 0.905 45 H 0.081 0.919 46 H 0.081 0.919 47 H 0.115 0.885 48 H 0.044 0.956 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.971 -7.342 -20.125 21.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.311 6.311 3 C -0.019 4.019 4 C -0.005 4.005 5 N -0.157 5.157 6 C -0.057 4.057 7 C -0.092 4.092 8 C 0.186 3.814 9 H 0.039 0.961 10 O -0.383 6.383 11 C -0.619 4.619 12 H 0.088 0.912 13 C -0.175 4.175 14 N -0.537 5.537 15 Si 0.783 3.217 16 H -0.201 1.201 17 H -0.213 1.213 18 H -0.184 1.184 19 N -0.155 5.155 20 N -0.189 5.189 21 C -0.016 4.016 22 N -0.169 5.169 23 C -0.071 4.071 24 C -0.116 4.116 25 C -0.143 4.143 26 H 0.143 0.857 27 C -0.213 4.213 28 C -0.173 4.173 29 H 0.149 0.851 30 C -0.029 4.029 31 H 0.131 0.869 32 H 0.048 0.952 33 H 0.076 0.924 34 H 0.048 0.952 35 H 0.078 0.922 36 H 0.146 0.854 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.203 0.797 41 H 0.069 0.931 42 H 0.080 0.920 43 H 0.060 0.940 44 H 0.113 0.887 45 H 0.099 0.901 46 H 0.100 0.900 47 H 0.133 0.867 48 H 0.062 0.938 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 3.001 -6.693 -20.527 21.798 hybrid contribution -0.662 -0.048 1.685 1.811 sum 2.339 -6.741 -18.842 20.148 Atomic orbital electron populations 1.22970 0.78909 1.04485 1.00458 1.87732 1.21789 1.26019 1.95544 1.22616 0.93126 0.85804 1.00380 1.21670 0.91940 0.79527 1.07323 1.46194 1.47311 1.16359 1.05860 1.25207 0.98642 0.90194 0.91698 1.20999 1.02053 1.01884 0.84288 1.19137 0.89355 0.79033 0.93897 0.96117 1.86525 1.56856 1.22708 1.72220 1.21989 1.04226 1.33442 1.02243 0.91168 1.25872 0.95168 0.94442 1.01980 1.70229 1.07553 1.37186 1.38710 0.85569 0.77172 0.79240 0.79674 1.20121 1.21255 1.18377 1.73935 1.21217 1.16381 1.03944 1.74446 1.22185 1.19286 1.03032 1.22597 1.02092 0.87554 0.89401 1.59100 1.05335 1.58098 0.94326 1.22197 0.88147 0.97884 0.98836 1.20835 0.97900 1.01947 0.90961 1.21696 0.92384 0.99650 1.00570 0.85681 1.23012 1.03618 0.92714 1.01961 1.22305 0.96723 1.05446 0.92865 0.85146 1.21597 0.92413 0.98020 0.90846 0.86852 0.95177 0.92404 0.95153 0.92158 0.85411 0.87074 0.88314 0.88261 0.79719 0.93120 0.92025 0.93991 0.88697 0.90058 0.90044 0.86700 0.93794 0.90318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.63 11.01 113.37 1.25 1.88 16 2 O -0.39 -10.94 10.70 -148.98 -1.59 -12.53 16 3 C 0.06 1.75 6.26 71.98 0.45 2.20 16 4 C 0.12 3.29 6.42 86.38 0.55 3.85 16 5 N -0.46 -15.86 2.81 -514.88 -1.45 -17.30 16 6 C 0.21 8.46 7.09 137.64 0.98 9.43 16 7 C -0.05 -2.08 5.21 29.85 0.16 -1.92 16 8 C 0.24 12.11 2.81 29.85 0.08 12.19 16 9 H 0.02 1.16 6.61 -2.39 -0.02 1.15 16 10 O -0.58 -30.99 12.49 -148.98 -1.86 -32.85 16 11 C -0.58 -30.29 8.76 25.60 0.22 -30.07 16 12 H 0.07 3.44 7.74 -2.91 -0.02 3.42 16 13 C 0.03 1.51 5.40 84.65 0.46 1.97 16 14 N -0.90 -52.78 12.84 21.45 0.28 -52.50 16 15 Si 0.96 42.03 29.54 68.60 2.03 44.06 16 16 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 17 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 19 N -0.32 -13.95 12.18 -49.54 -0.60 -14.55 16 20 N -0.35 -14.15 11.57 -58.00 -0.67 -14.82 16 21 C 0.34 11.65 6.62 260.11 1.72 13.37 16 22 N -0.44 -11.63 4.67 -707.78 -3.31 -14.94 16 23 C 0.06 1.33 5.25 85.95 0.45 1.78 16 24 C -0.08 -1.26 6.17 30.09 0.19 -1.07 16 25 C -0.12 -1.73 6.08 -11.88 -0.07 -1.80 16 26 H 0.13 1.27 8.14 -2.38 -0.02 1.25 16 27 C -0.18 -2.51 9.58 30.11 0.29 -2.22 16 28 C -0.15 -2.50 6.37 -10.85 -0.07 -2.57 16 29 H 0.13 1.66 8.14 -2.39 -0.02 1.64 16 30 C 0.10 2.29 5.07 86.28 0.44 2.72 16 31 H 0.11 1.97 8.14 -2.38 -0.02 1.95 16 32 H 0.03 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.03 1.15 6.61 -2.39 -0.02 1.14 16 35 H 0.06 1.67 6.58 -2.38 -0.02 1.65 16 36 H 0.13 2.97 8.14 -2.39 -0.02 2.96 16 37 H 0.11 2.99 7.15 -2.39 -0.02 2.97 16 38 H 0.10 3.77 8.14 -2.38 -0.02 3.75 16 39 H 0.10 3.48 7.20 -2.39 -0.02 3.46 16 40 H 0.36 17.30 9.04 -74.06 -0.67 16.63 16 41 H 0.26 14.52 8.31 -92.71 -0.77 13.75 16 42 H 0.06 1.65 6.36 -2.38 -0.02 1.63 16 43 H 0.04 1.07 7.00 -2.39 -0.02 1.05 16 44 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 45 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 46 H 0.08 1.40 7.24 -2.38 -0.02 1.38 16 47 H 0.11 1.21 8.14 -2.39 -0.02 1.19 16 48 H 0.04 1.19 7.76 -2.39 -0.02 1.17 16 49 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 Total: -1.00 -70.64 393.38 0.21 -70.43 By element: Atomic # 1 Polarization: 34.96 SS G_CDS: 0.30 Total: 35.25 kcal Atomic # 6 Polarization: 2.66 SS G_CDS: 7.09 Total: 9.75 kcal Atomic # 7 Polarization: -108.36 SS G_CDS: -5.75 Total: -114.11 kcal Atomic # 8 Polarization: -41.93 SS G_CDS: -3.45 Total: -45.38 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.06 kcal Total: -70.64 0.21 -70.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646819705.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.039 kcal (2) G-P(sol) polarization free energy of solvation -70.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.435 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds