Wall clock time and date at job start Tue Mar 31 2020 19:35:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99549 * 2 1 4 4 H 1.48499 * 109.47294 * 184.99733 * 3 2 1 5 5 H 1.48499 * 109.47111 * 304.99583 * 3 2 1 6 6 H 1.48499 * 109.47208 * 64.99767 * 3 2 1 7 7 C 1.37877 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99521 * 174.23270 * 7 2 1 9 9 C 1.50693 * 119.99990 * 354.22852 * 7 2 1 10 10 N 1.46905 * 109.47229 * 185.03978 * 9 7 2 11 11 C 1.46891 * 111.00109 * 194.49287 * 10 9 7 12 12 C 1.53001 * 109.46977 * 66.04673 * 11 10 9 13 13 N 1.46905 * 109.47325 * 179.97438 * 12 11 10 14 14 C 1.47012 * 110.99937 * 293.63831 * 13 12 11 15 15 C 1.53098 * 109.25761 * 177.60581 * 14 13 12 16 16 O 1.43013 * 109.26127 * 56.84478 * 15 14 13 17 17 C 1.43014 * 113.73953 * 301.33577 * 16 15 14 18 18 C 1.47014 * 111.00193 * 169.99962 * 13 12 11 19 19 C 1.38384 * 110.99615 * 70.54009 * 10 9 7 20 20 N 1.31468 * 126.43820 * 58.67148 * 19 10 9 21 21 N 1.28430 * 110.50935 * 179.81302 * 20 19 10 22 22 N 1.28920 * 110.31050 * 0.45729 * 21 20 19 23 23 N 1.35309 * 126.43859 * 238.97645 * 19 10 9 24 24 C 1.46498 * 127.38010 * 0.02562 * 23 19 10 25 25 C 1.53789 * 113.61440 * 220.22657 * 24 23 19 26 26 C 1.53958 * 87.01626 * 220.04768 * 25 24 23 27 27 C 1.53776 * 87.11466 * 25.36476 * 26 25 24 28 28 H 0.96997 * 120.00240 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47287 * 65.04331 * 9 7 2 30 30 H 1.09004 * 109.47454 * 305.04196 * 9 7 2 31 31 H 1.09000 * 109.47499 * 306.04656 * 11 10 9 32 32 H 1.09006 * 109.47072 * 186.04529 * 11 10 9 33 33 H 1.09001 * 109.47188 * 60.00457 * 12 11 10 34 34 H 1.08997 * 109.47315 * 299.99960 * 12 11 10 35 35 H 1.08998 * 109.50907 * 297.53807 * 14 13 12 36 36 H 1.08995 * 109.50826 * 57.67298 * 14 13 12 37 37 H 1.09008 * 109.50509 * 296.91083 * 15 14 13 38 38 H 1.09000 * 109.54103 * 176.80794 * 15 14 13 39 39 H 1.09001 * 109.50745 * 298.73004 * 17 16 15 40 40 H 1.09004 * 109.54236 * 178.62229 * 17 16 15 41 41 H 1.09001 * 109.50770 * 302.32746 * 18 13 12 42 42 H 1.08998 * 109.50645 * 62.41505 * 18 13 12 43 43 H 1.09002 * 112.85040 * 351.42359 * 24 23 19 44 44 H 1.08995 * 113.60993 * 334.56791 * 25 24 23 45 45 H 1.08999 * 113.61313 * 105.47220 * 25 24 23 46 46 H 1.09001 * 113.53953 * 270.80658 * 26 25 24 47 47 H 1.09006 * 113.73618 * 139.94244 * 26 25 24 48 48 H 1.09003 * 113.61189 * 220.09145 * 27 26 25 49 49 H 1.08997 * 113.61952 * 89.18463 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7045 1.3493 -0.1220 5 1 1.8011 2.4480 -1.1469 6 1 1.9840 2.3424 1.2689 7 6 2.0046 -1.1940 -0.0005 8 1 3.0805 -1.1962 -0.0945 9 6 1.2569 -2.4958 0.1301 10 7 2.2164 -3.6043 0.2240 11 6 1.5512 -4.8961 0.0080 12 6 1.0446 -4.9741 -1.4336 13 7 0.3799 -6.2662 -1.6498 14 6 1.3418 -7.3746 -1.5635 15 6 0.5991 -8.7023 -1.7348 16 8 -0.1048 -8.6920 -2.9796 17 6 -1.0505 -7.6256 -3.0974 18 6 -0.3245 -6.2870 -2.9400 19 6 2.8793 -3.5848 1.4385 20 7 2.3281 -3.6514 2.6302 21 7 3.2284 -3.6120 3.5452 22 7 4.3997 -3.5094 3.0165 23 7 4.2163 -3.4878 1.6229 24 6 5.2510 -3.3823 0.5912 25 6 6.5124 -4.2071 0.8972 26 6 7.3243 -3.0203 0.3470 27 6 6.1307 -2.1282 0.7269 28 1 -0.4850 0.8400 -0.0004 29 1 0.6209 -2.6389 -0.7435 30 1 0.6402 -2.4721 1.0286 31 1 0.7097 -4.9907 0.6944 32 1 2.2599 -5.7044 0.1884 33 1 1.8861 -4.8796 -2.1200 34 1 0.3360 -4.1659 -1.6140 35 1 2.0882 -7.2709 -2.3510 36 1 1.8331 -7.3552 -0.5907 37 1 -0.1099 -8.8309 -0.9168 38 1 1.3151 -9.5241 -1.7282 39 1 -1.8075 -7.7228 -2.3192 40 1 -1.5276 -7.6680 -4.0766 41 1 -1.0496 -5.4737 -2.9720 42 1 0.3951 -6.1651 -3.7496 43 1 4.8623 -3.5361 -0.4155 44 1 6.6687 -4.3875 1.9607 45 1 6.5987 -5.1123 0.2961 46 1 7.5036 -3.0759 -0.7267 47 1 8.2285 -2.8056 0.9166 48 1 5.9092 -1.3575 -0.0115 49 1 6.1825 -1.7391 1.7438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647451551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:25 Heat of formation + Delta-G solvation = 116.600178 kcal Electronic energy + Delta-G solvation = -30533.129634 eV Core-core repulsion = 26534.431998 eV Total energy + Delta-G solvation = -3998.697636 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.36154 -39.66457 -38.72797 -37.58998 -35.58421 -33.07607 -32.75574 -31.36306 -31.00001 -29.36674 -27.42362 -26.15389 -25.76117 -25.34392 -24.15765 -23.12930 -22.64199 -21.91524 -20.49139 -20.01831 -19.43599 -17.53093 -16.96667 -16.50344 -16.22874 -16.03768 -15.55667 -15.43950 -15.26463 -15.14273 -14.92056 -14.56293 -14.05016 -13.78462 -13.47322 -13.27826 -13.06760 -12.78113 -12.54403 -12.51999 -12.33751 -12.05973 -11.91017 -11.66441 -11.50190 -11.45137 -11.40573 -11.02876 -10.89226 -10.83040 -10.71105 -10.56024 -10.42756 -10.35361 -10.17169 -9.79334 -9.71913 -9.57834 -9.36100 -8.62764 -8.42444 -8.15715 -6.22233 -4.25042 1.56685 2.26158 2.91347 3.19526 3.28020 3.29214 3.57278 3.76175 4.21071 4.29832 4.38249 4.45069 4.71727 4.75473 4.76810 4.88260 4.90267 5.03923 5.09686 5.15044 5.17711 5.24003 5.39835 5.42040 5.44751 5.48489 5.51897 5.66231 5.68127 5.69918 5.72589 5.75396 5.75873 5.84725 5.94913 5.96338 6.10026 6.11675 6.18535 6.29356 6.53738 6.79576 6.90774 6.97901 7.02841 7.10446 7.40122 7.69822 7.80828 8.10761 8.77974 9.11307 9.39813 10.88218 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.004181 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.322826 B = 6696.110664 C = 8486.179702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.522 4.522 8 H 0.060 0.940 9 C 0.197 3.803 10 N -0.474 5.474 11 C 0.072 3.928 12 C 0.062 3.938 13 N -0.536 5.536 14 C 0.014 3.986 15 C 0.064 3.936 16 O -0.389 6.389 17 C 0.064 3.936 18 C 0.020 3.980 19 C 0.459 3.541 20 N -0.356 5.356 21 N -0.047 5.047 22 N -0.104 5.104 23 N -0.358 5.358 24 C 0.136 3.864 25 C -0.141 4.141 26 C -0.136 4.136 27 C -0.141 4.141 28 H 0.265 0.735 29 H 0.051 0.949 30 H 0.022 0.978 31 H 0.059 0.941 32 H 0.062 0.938 33 H 0.045 0.955 34 H 0.093 0.907 35 H 0.043 0.957 36 H 0.086 0.914 37 H 0.060 0.940 38 H 0.095 0.905 39 H 0.060 0.940 40 H 0.097 0.903 41 H 0.090 0.910 42 H 0.043 0.957 43 H 0.138 0.862 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.086 0.914 47 H 0.078 0.922 48 H 0.083 0.917 49 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.819 -13.211 -6.292 16.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.722 3.278 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.560 4.560 8 H 0.078 0.922 9 C 0.074 3.926 10 N -0.203 5.203 11 C -0.056 4.056 12 C -0.066 4.066 13 N -0.262 5.262 14 C -0.114 4.114 15 C -0.013 4.013 16 O -0.307 6.307 17 C -0.013 4.013 18 C -0.109 4.109 19 C 0.093 3.907 20 N -0.212 5.212 21 N -0.043 5.043 22 N -0.091 5.091 23 N -0.155 5.155 24 C 0.032 3.968 25 C -0.179 4.179 26 C -0.174 4.174 27 C -0.180 4.180 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.040 0.960 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.104 0.896 37 H 0.078 0.922 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.115 0.885 41 H 0.108 0.892 42 H 0.061 0.939 43 H 0.156 0.844 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.105 0.895 47 H 0.096 0.904 48 H 0.102 0.898 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 6.712 -13.250 -5.048 15.688 hybrid contribution 0.591 1.502 -0.836 1.817 sum 7.303 -11.749 -5.884 15.033 Atomic orbital electron populations 1.69939 1.05985 1.27157 1.49370 1.24893 0.94835 0.99200 0.94782 0.86499 0.80023 0.83462 0.77839 1.19727 1.20776 1.20768 1.21010 0.93705 0.89864 1.51471 0.92195 1.20101 0.88895 0.85217 0.98418 1.59344 1.33431 1.06134 1.21398 1.21966 0.97699 0.88935 0.97004 1.22117 0.98335 0.90464 0.95660 1.62100 1.28857 1.03280 1.31932 1.22841 0.94479 0.91909 1.02184 1.22659 0.95575 0.96468 0.86582 1.87956 1.55367 1.50216 1.37206 1.22675 0.91024 0.85344 1.02245 1.22763 0.98715 0.99222 0.90174 1.22988 0.83230 0.92566 0.91903 1.74890 1.25114 1.24639 0.96600 1.77837 0.93545 1.09991 1.22904 1.82320 1.18041 1.24004 0.84706 1.51516 1.06716 1.50514 1.06799 1.23256 0.84418 0.99042 0.90039 1.23395 0.93680 0.97779 1.03086 1.22728 0.97362 0.95798 1.01497 1.23346 0.94355 0.96521 1.03741 0.92568 0.93121 0.95961 0.92224 0.91988 0.93684 0.88883 0.93922 0.89589 0.92217 0.88686 0.92168 0.88529 0.89178 0.93888 0.84411 0.88552 0.90524 0.89499 0.90375 0.89849 0.88928 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.12 13.30 55.43 0.74 -24.38 16 2 C 0.07 1.80 5.45 -17.82 -0.10 1.70 16 3 Si 0.89 21.05 29.54 -169.99 -5.02 16.03 16 4 H -0.27 -6.26 7.11 56.52 0.40 -5.85 16 5 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 6 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 7 C -0.52 -13.73 8.78 -34.44 -0.30 -14.03 16 8 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 9 C 0.20 4.71 4.58 -4.98 -0.02 4.69 16 10 N -0.47 -9.35 4.42 -176.23 -0.78 -10.13 16 11 C 0.07 1.19 4.83 -3.83 -0.02 1.17 16 12 C 0.06 0.91 4.92 -3.82 -0.02 0.89 16 13 N -0.54 -6.89 4.73 -234.31 -1.11 -8.00 16 14 C 0.01 0.16 5.44 -3.71 -0.02 0.14 16 15 C 0.06 0.65 7.01 37.21 0.26 0.92 16 16 O -0.39 -4.55 10.83 -35.23 -0.38 -4.93 16 17 C 0.06 0.65 7.01 37.21 0.26 0.91 16 18 C 0.02 0.22 5.65 -3.71 -0.02 0.20 16 19 C 0.46 9.51 5.93 -320.42 -1.90 7.61 16 20 N -0.36 -8.07 11.90 30.10 0.36 -7.71 16 21 N -0.05 -1.02 13.38 60.35 0.81 -0.21 16 22 N -0.10 -2.06 13.51 60.35 0.82 -1.24 16 23 N -0.36 -6.62 3.74 -54.55 -0.20 -6.83 16 24 C 0.14 1.96 4.73 -67.11 -0.32 1.64 16 25 C -0.14 -1.56 7.80 -25.82 -0.20 -1.76 16 26 C -0.14 -1.33 8.09 -25.83 -0.21 -1.54 16 27 C -0.14 -1.90 7.88 -25.92 -0.20 -2.10 16 28 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 29 H 0.05 1.22 5.97 -51.93 -0.31 0.91 16 30 H 0.02 0.61 7.81 -51.93 -0.41 0.20 16 31 H 0.06 1.08 8.12 -51.93 -0.42 0.66 16 32 H 0.06 0.93 6.43 -51.93 -0.33 0.60 16 33 H 0.04 0.65 8.12 -51.93 -0.42 0.23 16 34 H 0.09 1.52 6.20 -51.93 -0.32 1.20 16 35 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.09 0.94 6.38 -51.93 -0.33 0.61 16 37 H 0.06 0.61 8.14 -51.92 -0.42 0.18 16 38 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.09 0.98 8.09 -51.93 -0.42 0.56 16 42 H 0.04 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.14 1.92 8.07 -51.93 -0.42 1.50 16 44 H 0.10 1.16 7.84 -51.93 -0.41 0.76 16 45 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 46 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 47 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 49 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 LS Contribution 393.46 15.07 5.93 5.93 Total: -1.00 -30.76 393.46 -9.65 -40.41 By element: Atomic # 1 Polarization: 8.63 SS G_CDS: -7.99 Total: 0.64 kcal Atomic # 6 Polarization: 3.23 SS G_CDS: -2.81 Total: 0.42 kcal Atomic # 7 Polarization: -59.12 SS G_CDS: 0.63 Total: -58.49 kcal Atomic # 8 Polarization: -4.55 SS G_CDS: -0.38 Total: -4.93 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -30.76 -9.65 -40.41 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647451551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 157.009 kcal (2) G-P(sol) polarization free energy of solvation -30.764 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 126.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds