Wall clock time and date at job start Tue Mar 31 2020 19:35:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86803 * 119.99549 * 2 1 4 4 H 1.48499 * 109.47294 * 184.99733 * 3 2 1 5 5 H 1.48499 * 109.47111 * 304.99583 * 3 2 1 6 6 H 1.48499 * 109.47208 * 64.99767 * 3 2 1 7 7 C 1.37877 * 120.00267 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99521 * 174.23270 * 7 2 1 9 9 C 1.50693 * 119.99990 * 354.22852 * 7 2 1 10 10 N 1.46905 * 109.47229 * 185.03978 * 9 7 2 11 11 C 1.46891 * 111.00109 * 194.49287 * 10 9 7 12 12 C 1.53001 * 109.46977 * 66.04673 * 11 10 9 13 13 N 1.46905 * 109.47325 * 179.97438 * 12 11 10 14 14 C 1.47012 * 110.99937 * 293.63831 * 13 12 11 15 15 C 1.53098 * 109.25761 * 177.60581 * 14 13 12 16 16 O 1.43013 * 109.26127 * 56.84478 * 15 14 13 17 17 C 1.43014 * 113.73953 * 301.33577 * 16 15 14 18 18 C 1.47014 * 111.00193 * 169.99962 * 13 12 11 19 19 C 1.38384 * 110.99615 * 70.54009 * 10 9 7 20 20 N 1.31468 * 126.43820 * 58.67148 * 19 10 9 21 21 N 1.28430 * 110.50935 * 179.81302 * 20 19 10 22 22 N 1.28920 * 110.31050 * 0.45729 * 21 20 19 23 23 N 1.35309 * 126.43859 * 238.97645 * 19 10 9 24 24 C 1.46498 * 127.38010 * 0.02562 * 23 19 10 25 25 C 1.53789 * 113.61440 * 220.22657 * 24 23 19 26 26 C 1.53958 * 87.01626 * 220.04768 * 25 24 23 27 27 C 1.53776 * 87.11466 * 25.36476 * 26 25 24 28 28 H 0.96997 * 120.00240 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47287 * 65.04331 * 9 7 2 30 30 H 1.09004 * 109.47454 * 305.04196 * 9 7 2 31 31 H 1.09000 * 109.47499 * 306.04656 * 11 10 9 32 32 H 1.09006 * 109.47072 * 186.04529 * 11 10 9 33 33 H 1.09001 * 109.47188 * 60.00457 * 12 11 10 34 34 H 1.08997 * 109.47315 * 299.99960 * 12 11 10 35 35 H 1.08998 * 109.50907 * 297.53807 * 14 13 12 36 36 H 1.08995 * 109.50826 * 57.67298 * 14 13 12 37 37 H 1.09008 * 109.50509 * 296.91083 * 15 14 13 38 38 H 1.09000 * 109.54103 * 176.80794 * 15 14 13 39 39 H 1.09001 * 109.50745 * 298.73004 * 17 16 15 40 40 H 1.09004 * 109.54236 * 178.62229 * 17 16 15 41 41 H 1.09001 * 109.50770 * 302.32746 * 18 13 12 42 42 H 1.08998 * 109.50645 * 62.41505 * 18 13 12 43 43 H 1.09002 * 112.85040 * 351.42359 * 24 23 19 44 44 H 1.08995 * 113.60993 * 334.56791 * 25 24 23 45 45 H 1.08999 * 113.61313 * 105.47220 * 25 24 23 46 46 H 1.09001 * 113.53953 * 270.80658 * 26 25 24 47 47 H 1.09006 * 113.73618 * 139.94244 * 26 25 24 48 48 H 1.09003 * 113.61189 * 220.09145 * 27 26 25 49 49 H 1.08997 * 113.61952 * 89.18463 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7045 1.3493 -0.1220 5 1 1.8011 2.4480 -1.1469 6 1 1.9840 2.3424 1.2689 7 6 2.0046 -1.1940 -0.0005 8 1 3.0805 -1.1962 -0.0945 9 6 1.2569 -2.4958 0.1301 10 7 2.2164 -3.6043 0.2240 11 6 1.5512 -4.8961 0.0080 12 6 1.0446 -4.9741 -1.4336 13 7 0.3799 -6.2662 -1.6498 14 6 1.3418 -7.3746 -1.5635 15 6 0.5991 -8.7023 -1.7348 16 8 -0.1048 -8.6920 -2.9796 17 6 -1.0505 -7.6256 -3.0974 18 6 -0.3245 -6.2870 -2.9400 19 6 2.8793 -3.5848 1.4385 20 7 2.3281 -3.6514 2.6302 21 7 3.2284 -3.6120 3.5452 22 7 4.3997 -3.5094 3.0165 23 7 4.2163 -3.4878 1.6229 24 6 5.2510 -3.3823 0.5912 25 6 6.5124 -4.2071 0.8972 26 6 7.3243 -3.0203 0.3470 27 6 6.1307 -2.1282 0.7269 28 1 -0.4850 0.8400 -0.0004 29 1 0.6209 -2.6389 -0.7435 30 1 0.6402 -2.4721 1.0286 31 1 0.7097 -4.9907 0.6944 32 1 2.2599 -5.7044 0.1884 33 1 1.8861 -4.8796 -2.1200 34 1 0.3360 -4.1659 -1.6140 35 1 2.0882 -7.2709 -2.3510 36 1 1.8331 -7.3552 -0.5907 37 1 -0.1099 -8.8309 -0.9168 38 1 1.3151 -9.5241 -1.7282 39 1 -1.8075 -7.7228 -2.3192 40 1 -1.5276 -7.6680 -4.0766 41 1 -1.0496 -5.4737 -2.9720 42 1 0.3951 -6.1651 -3.7496 43 1 4.8623 -3.5361 -0.4155 44 1 6.6687 -4.3875 1.9607 45 1 6.5987 -5.1123 0.2961 46 1 7.5036 -3.0759 -0.7267 47 1 8.2285 -2.8056 0.9166 48 1 5.9092 -1.3575 -0.0115 49 1 6.1825 -1.7391 1.7438 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647451551.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:24 Heat of formation + Delta-G solvation = 95.852365 kcal Electronic energy + Delta-G solvation = -30534.029327 eV Core-core repulsion = 26534.431998 eV Total energy + Delta-G solvation = -3999.597329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -43.97040 -40.62042 -39.79070 -39.07453 -36.69554 -34.88940 -34.43381 -32.60415 -32.15001 -30.81231 -29.11419 -27.34374 -26.74329 -26.62393 -25.22189 -24.84741 -24.05951 -23.20973 -21.70672 -21.28270 -20.52277 -18.98627 -18.64681 -17.79471 -17.66907 -17.14755 -17.02401 -16.54541 -16.42716 -16.30085 -15.99775 -15.89791 -15.44263 -15.11357 -14.72238 -14.55380 -14.38512 -14.25668 -13.99311 -13.73451 -13.52666 -13.33408 -13.29490 -13.07217 -12.93232 -12.69746 -12.58202 -12.50919 -12.31870 -12.26625 -11.94724 -11.85614 -11.74774 -11.55034 -11.49909 -11.44819 -11.10004 -10.96038 -10.69795 -10.64165 -9.91532 -9.42618 -8.30394 -6.39000 -0.02142 0.79785 1.23840 1.32060 1.35217 1.44401 2.26390 2.42468 2.90510 3.03670 3.05089 3.20998 3.43871 3.53489 3.69291 3.76484 3.77764 3.89868 3.99953 4.06138 4.14573 4.21512 4.28867 4.35942 4.36589 4.40248 4.47013 4.61603 4.67962 4.72706 4.74011 4.77406 4.82452 4.83477 4.84641 4.91185 4.96003 5.00102 5.02574 5.03353 5.09310 5.20433 5.43388 5.45963 5.78283 5.87710 5.95302 5.98470 6.16488 6.18559 6.70820 7.29286 7.47097 8.80770 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008755 B = 0.004181 C = 0.003299 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3197.322826 B = 6696.110664 C = 8486.179702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C 0.017 3.983 3 Si 0.952 3.048 4 H -0.262 1.262 5 H -0.271 1.271 6 H -0.288 1.288 7 C -0.529 4.529 8 H 0.060 0.940 9 C 0.215 3.785 10 N -0.461 5.461 11 C 0.078 3.922 12 C 0.076 3.924 13 N -0.546 5.546 14 C 0.015 3.985 15 C 0.064 3.936 16 O -0.402 6.402 17 C 0.066 3.934 18 C 0.019 3.981 19 C 0.444 3.556 20 N -0.386 5.386 21 N -0.067 5.067 22 N -0.095 5.095 23 N -0.344 5.344 24 C 0.110 3.890 25 C -0.128 4.128 26 C -0.112 4.112 27 C -0.149 4.149 28 H 0.266 0.734 29 H 0.047 0.953 30 H -0.019 1.019 31 H 0.039 0.961 32 H 0.082 0.918 33 H 0.051 0.949 34 H 0.071 0.929 35 H 0.045 0.955 36 H 0.087 0.913 37 H 0.058 0.942 38 H 0.118 0.882 39 H 0.059 0.941 40 H 0.118 0.882 41 H 0.089 0.911 42 H 0.044 0.956 43 H 0.145 0.855 44 H 0.086 0.914 45 H 0.101 0.899 46 H 0.110 0.890 47 H 0.095 0.905 48 H 0.076 0.924 49 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.118 -14.145 -7.811 18.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.183 4.183 3 Si 0.777 3.223 4 H -0.186 1.186 5 H -0.196 1.196 6 H -0.215 1.215 7 C -0.567 4.567 8 H 0.078 0.922 9 C 0.091 3.909 10 N -0.189 5.189 11 C -0.050 4.050 12 C -0.052 4.052 13 N -0.272 5.272 14 C -0.113 4.113 15 C -0.012 4.012 16 O -0.320 6.320 17 C -0.011 4.011 18 C -0.109 4.109 19 C 0.078 3.922 20 N -0.243 5.243 21 N -0.063 5.063 22 N -0.082 5.082 23 N -0.142 5.142 24 C 0.009 3.991 25 C -0.167 4.167 26 C -0.150 4.150 27 C -0.188 4.188 28 H 0.075 0.925 29 H 0.065 0.935 30 H -0.001 1.001 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.069 0.931 34 H 0.090 0.910 35 H 0.063 0.937 36 H 0.106 0.894 37 H 0.077 0.923 38 H 0.135 0.865 39 H 0.078 0.922 40 H 0.136 0.864 41 H 0.107 0.893 42 H 0.062 0.938 43 H 0.162 0.838 44 H 0.105 0.895 45 H 0.120 0.880 46 H 0.129 0.871 47 H 0.113 0.887 48 H 0.094 0.906 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 9.042 -14.208 -6.584 18.082 hybrid contribution -0.090 1.748 -0.364 1.788 sum 8.952 -12.459 -6.949 16.842 Atomic orbital electron populations 1.70043 1.07386 1.27999 1.50550 1.25681 0.95581 1.02491 0.94595 0.85586 0.79383 0.79600 0.77687 1.18563 1.19595 1.21452 1.21288 0.93784 0.90888 1.50735 0.92169 1.19673 0.88893 0.86212 0.96163 1.59301 1.32387 1.06375 1.20865 1.22016 0.97311 0.87850 0.97812 1.21860 0.97919 0.91123 0.94297 1.62082 1.29264 1.02724 1.33129 1.22895 0.94334 0.91762 1.02333 1.22767 0.95855 0.96475 0.86127 1.87943 1.55674 1.50589 1.37836 1.22765 0.90612 0.84211 1.03503 1.22826 0.98670 1.00133 0.89309 1.23035 0.84161 0.93413 0.91590 1.74796 1.26358 1.25557 0.97606 1.77807 0.93897 1.11401 1.23225 1.82212 1.17457 1.23000 0.85509 1.51827 1.06711 1.48748 1.06882 1.23957 0.84501 1.01264 0.89384 1.23364 0.91215 0.99004 1.03085 1.22714 0.96250 0.92926 1.03123 1.23396 0.96357 0.96405 1.02657 0.92461 0.93489 1.00063 0.94213 0.89984 0.93106 0.91045 0.93664 0.89425 0.92345 0.86450 0.92233 0.86376 0.89265 0.93802 0.83769 0.89506 0.88014 0.87141 0.88675 0.90566 0.90680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.29 13.30 21.45 0.29 -53.01 16 2 C 0.02 0.91 5.45 84.65 0.46 1.37 16 3 Si 0.95 43.20 29.54 68.60 2.03 45.23 16 4 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.03 16 6 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 7 C -0.53 -28.18 8.78 25.60 0.22 -27.96 16 8 H 0.06 3.14 7.82 -2.91 -0.02 3.12 16 9 C 0.22 10.65 4.58 85.55 0.39 11.04 16 10 N -0.46 -18.44 4.42 -711.45 -3.14 -21.58 16 11 C 0.08 2.58 4.83 86.31 0.42 3.00 16 12 C 0.08 2.23 4.92 86.30 0.42 2.66 16 13 N -0.55 -13.70 4.73 -895.22 -4.23 -17.93 16 14 C 0.01 0.31 5.44 86.31 0.47 0.78 16 15 C 0.06 1.20 7.01 72.01 0.50 1.70 16 16 O -0.40 -8.65 10.83 -148.98 -1.61 -10.26 16 17 C 0.07 1.24 7.01 72.01 0.50 1.74 16 18 C 0.02 0.40 5.65 86.31 0.49 0.89 16 19 C 0.44 18.62 5.93 260.65 1.55 20.17 16 20 N -0.39 -17.99 11.90 -58.70 -0.70 -18.69 16 21 N -0.07 -3.00 13.38 37.02 0.50 -2.50 16 22 N -0.09 -3.74 13.51 37.02 0.50 -3.23 16 23 N -0.34 -12.57 3.74 -326.51 -1.22 -13.79 16 24 C 0.11 2.99 4.73 45.52 0.22 3.21 16 25 C -0.13 -2.45 7.80 31.18 0.24 -2.21 16 26 C -0.11 -1.79 8.09 31.18 0.25 -1.54 16 27 C -0.15 -3.76 7.88 31.12 0.25 -3.52 16 28 H 0.27 14.59 8.31 -92.71 -0.77 13.82 16 29 H 0.05 2.36 5.97 -2.38 -0.01 2.35 16 30 H -0.02 -1.07 7.81 -2.38 -0.02 -1.09 16 31 H 0.04 1.49 8.12 -2.39 -0.02 1.47 16 32 H 0.08 2.41 6.43 -2.38 -0.02 2.39 16 33 H 0.05 1.43 8.12 -2.39 -0.02 1.41 16 34 H 0.07 2.41 6.20 -2.39 -0.01 2.40 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.09 1.78 6.38 -2.39 -0.02 1.77 16 37 H 0.06 1.10 8.14 -2.38 -0.02 1.08 16 38 H 0.12 1.63 8.14 -2.39 -0.02 1.61 16 39 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 40 H 0.12 1.69 8.14 -2.39 -0.02 1.67 16 41 H 0.09 1.93 8.09 -2.39 -0.02 1.91 16 42 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.14 3.73 8.07 -2.39 -0.02 3.71 16 44 H 0.09 1.88 7.84 -2.39 -0.02 1.86 16 45 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 47 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 48 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 Total: -1.00 -67.82 393.46 -0.27 -68.09 By element: Atomic # 1 Polarization: 15.41 SS G_CDS: 0.94 Total: 16.35 kcal Atomic # 6 Polarization: 4.95 SS G_CDS: 6.39 Total: 11.34 kcal Atomic # 7 Polarization: -122.73 SS G_CDS: -8.01 Total: -130.75 kcal Atomic # 8 Polarization: -8.65 SS G_CDS: -1.61 Total: -10.26 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -67.82 -0.27 -68.09 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647451551.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.942 kcal (2) G-P(sol) polarization free energy of solvation -67.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds