Wall clock time and date at job start Tue Mar 31 2020 19:37:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 115.54350 * 2 1 4 4 N 1.40591 * 127.38046 * 235.70177 * 3 2 1 5 5 N 1.28912 * 106.80985 * 180.02562 * 4 3 2 6 6 N 1.28420 * 110.31899 * 359.73491 * 5 4 3 7 7 C 1.31467 * 110.50984 * 0.45203 * 6 5 4 8 8 N 1.38387 * 126.43926 * 179.82029 * 7 6 5 9 9 C 1.46894 * 110.99677 * 305.55685 * 8 7 6 10 10 C 1.50698 * 109.47319 * 291.78632 * 9 8 7 11 11 H 1.07990 * 120.00191 * 356.07519 * 10 9 8 12 12 C 1.37881 * 119.99838 * 175.79785 * 10 9 8 13 13 N 1.31512 * 119.99912 * 185.51943 * 12 10 9 14 14 Si 1.86799 * 120.00034 * 5.51896 * 12 10 9 15 15 H 1.48495 * 109.47152 * 90.00047 * 14 12 10 16 16 H 1.48501 * 109.47291 * 209.99893 * 14 12 10 17 17 H 1.48501 * 109.47240 * 330.00140 * 14 12 10 18 18 C 1.46898 * 110.99857 * 69.51396 * 8 7 6 19 19 C 1.52996 * 109.47210 * 170.00136 * 18 8 7 20 20 N 1.46896 * 109.47483 * 179.97438 * 19 18 8 21 21 C 1.47014 * 111.00179 * 293.63539 * 20 19 18 22 22 C 1.53100 * 109.25911 * 177.60496 * 21 20 19 23 23 O 1.43022 * 109.25471 * 56.84802 * 22 21 20 24 24 C 1.43012 * 113.73727 * 301.32540 * 23 22 21 25 25 C 1.47015 * 111.00119 * 169.99471 * 20 19 18 26 26 C 1.52996 * 117.50387 * 145.67290 * 2 1 3 27 27 C 1.52999 * 117.49921 * 214.33498 * 2 1 3 28 28 H 1.08997 * 109.47414 * 64.65685 * 1 2 3 29 29 H 1.09007 * 109.46869 * 184.65710 * 1 2 3 30 30 H 1.08994 * 109.47116 * 304.65418 * 1 2 3 31 31 H 1.09004 * 109.47067 * 171.78701 * 9 8 7 32 32 H 1.09003 * 109.47357 * 51.79510 * 9 8 7 33 33 H 0.97006 * 119.99907 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.47231 * 289.99713 * 18 8 7 35 35 H 1.08996 * 109.47121 * 50.00037 * 18 8 7 36 36 H 1.09004 * 109.46678 * 299.99915 * 19 18 8 37 37 H 1.09006 * 109.47128 * 59.99368 * 19 18 8 38 38 H 1.09002 * 109.50164 * 297.54109 * 21 20 19 39 39 H 1.09001 * 109.50176 * 57.66978 * 21 20 19 40 40 H 1.08997 * 109.50663 * 296.91679 * 22 21 20 41 41 H 1.08996 * 109.53986 * 176.80345 * 22 21 20 42 42 H 1.08999 * 109.51198 * 298.73956 * 24 23 22 43 43 H 1.09007 * 109.53907 * 178.62709 * 24 23 22 44 44 H 1.08999 * 109.51255 * 302.33340 * 25 20 19 45 45 H 1.09000 * 109.50478 * 62.41865 * 25 20 19 46 46 H 1.08995 * 117.50238 * 215.00656 * 26 2 1 47 47 H 1.09005 * 117.49529 * 0.02562 * 26 2 1 48 48 H 1.08993 * 117.49960 * 359.97438 * 27 2 1 49 49 H 1.09008 * 117.49689 * 144.97059 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1617 1.3218 0.0000 4 7 3.0978 1.8205 -0.9229 5 7 3.3883 3.0193 -0.5484 6 7 2.7291 3.3281 0.5095 7 6 1.9699 2.3240 0.8887 8 7 1.1281 2.2989 1.9868 9 6 1.8555 2.6435 3.2156 10 6 2.8326 1.5448 3.5459 11 1 2.8617 0.6490 2.9435 12 6 3.6935 1.6858 4.6136 13 7 4.6184 0.7779 4.8370 14 14 3.5460 3.1664 5.7431 15 1 2.6146 2.8496 6.8554 16 1 4.8825 3.5016 6.2969 17 1 3.0237 4.3249 4.9749 18 6 -0.0226 3.1903 1.7885 19 6 -1.0490 2.9525 2.8979 20 7 -2.1994 3.8443 2.7000 21 6 -1.8137 5.2508 2.8851 22 6 -3.0248 6.1467 2.6118 23 8 -4.0999 5.7621 3.4730 24 6 -4.5016 4.3983 3.3186 25 6 -3.3056 3.4847 3.5992 26 6 2.2366 -1.1207 0.7653 27 6 2.2365 -1.1207 -0.7655 28 1 -0.3634 0.4399 -0.9287 29 1 -0.3633 -1.0244 0.0834 30 1 -0.3633 0.5843 0.8453 31 1 1.1478 2.7592 4.0365 32 1 2.3962 3.5784 3.0677 33 1 5.2242 0.8773 5.5880 34 1 0.3117 4.2274 1.8191 35 1 -0.4793 2.9841 0.8206 36 1 -1.3832 1.9154 2.8674 37 1 -0.5921 3.1587 3.8659 38 1 -1.4722 5.4028 3.9090 39 1 -1.0111 5.5023 2.1919 40 1 -3.3332 6.0346 1.5724 41 1 -2.7596 7.1865 2.8027 42 1 -4.8530 4.2354 2.2998 43 1 -5.3043 4.1729 4.0209 44 1 -3.5919 2.4471 3.4273 45 1 -2.9877 3.6078 4.6345 46 1 3.1714 -0.8746 1.2688 47 1 1.6113 -1.8583 1.2684 48 1 1.6113 -1.8581 -1.2687 49 1 3.1712 -0.8744 -1.2694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001650050474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:41 Heat of formation + Delta-G solvation = 129.577606 kcal Electronic energy + Delta-G solvation = -30943.088935 eV Core-core repulsion = 26944.954042 eV Total energy + Delta-G solvation = -3998.134893 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.39566 -39.74490 -38.03522 -37.68947 -35.65328 -32.78639 -32.43985 -31.43318 -31.06167 -29.69294 -28.59653 -27.85495 -25.78186 -24.20286 -23.86323 -23.01438 -22.40980 -21.86754 -20.70816 -20.27444 -19.70176 -17.41279 -16.80172 -16.60231 -16.33492 -16.04124 -15.76466 -15.44979 -15.21113 -14.91621 -14.72735 -14.43360 -14.01185 -13.80730 -13.53063 -13.27764 -13.19258 -12.91841 -12.64178 -12.45674 -12.39556 -12.27002 -12.02523 -11.82704 -11.55737 -11.43121 -11.34416 -11.12221 -11.02509 -10.86541 -10.72995 -10.59821 -10.50192 -10.20752 -10.08951 -9.85720 -9.60819 -9.49399 -9.44377 -8.72226 -8.51272 -8.25478 -6.22990 -4.22587 1.54733 2.13386 2.86345 3.17219 3.26222 3.27728 3.46850 3.61028 3.70012 4.15811 4.27729 4.55539 4.69521 4.71384 4.83303 4.84305 4.87424 4.97637 4.99838 5.09970 5.14874 5.18018 5.33064 5.36215 5.44716 5.48132 5.56622 5.60249 5.63286 5.64657 5.68402 5.72258 5.77163 5.88385 5.91332 5.95706 6.01687 6.07765 6.20080 6.26847 6.34624 6.63831 6.76182 6.80660 6.82425 6.95432 7.13359 7.40304 7.63024 8.34811 8.80690 9.07271 9.36739 10.89365 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008744 B = 0.004648 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.535404 B = 6022.271285 C = 7722.912431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.103 3.897 3 N -0.336 5.336 4 N -0.100 5.100 5 N -0.045 5.045 6 N -0.357 5.357 7 C 0.465 3.535 8 N -0.458 5.458 9 C 0.166 3.834 10 C -0.523 4.523 11 H 0.080 0.920 12 C 0.079 3.921 13 N -0.890 5.890 14 Si 0.869 3.131 15 H -0.274 1.274 16 H -0.283 1.283 17 H -0.264 1.264 18 C 0.067 3.933 19 C 0.059 3.941 20 N -0.536 5.536 21 C 0.010 3.990 22 C 0.065 3.935 23 O -0.388 6.388 24 C 0.065 3.935 25 C 0.019 3.981 26 C -0.148 4.148 27 C -0.162 4.162 28 H 0.060 0.940 29 H 0.081 0.919 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.017 0.983 33 H 0.266 0.734 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.046 0.954 39 H 0.090 0.910 40 H 0.059 0.941 41 H 0.097 0.903 42 H 0.059 0.941 43 H 0.096 0.904 44 H 0.088 0.912 45 H 0.044 0.956 46 H 0.111 0.889 47 H 0.112 0.888 48 H 0.109 0.891 49 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.827 0.957 -5.856 17.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.017 3.983 3 N -0.132 5.132 4 N -0.085 5.085 5 N -0.041 5.041 6 N -0.214 5.214 7 C 0.099 3.901 8 N -0.186 5.186 9 C 0.042 3.958 10 C -0.561 4.561 11 H 0.098 0.902 12 C -0.125 4.125 13 N -0.527 5.527 14 Si 0.696 3.304 15 H -0.200 1.200 16 H -0.208 1.208 17 H -0.188 1.188 18 C -0.061 4.061 19 C -0.068 4.068 20 N -0.262 5.262 21 C -0.118 4.118 22 C -0.012 4.012 23 O -0.306 6.306 24 C -0.012 4.012 25 C -0.110 4.110 26 C -0.186 4.186 27 C -0.199 4.199 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.103 0.897 31 H 0.060 0.940 32 H 0.035 0.965 33 H 0.076 0.924 34 H 0.067 0.933 35 H 0.095 0.905 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.108 0.892 40 H 0.077 0.923 41 H 0.115 0.885 42 H 0.077 0.923 43 H 0.114 0.886 44 H 0.106 0.894 45 H 0.063 0.937 46 H 0.129 0.871 47 H 0.131 0.869 48 H 0.127 0.873 49 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -16.160 1.134 -6.879 17.600 hybrid contribution 0.406 0.661 1.854 2.010 sum -15.754 1.794 -5.025 16.633 Atomic orbital electron populations 1.21538 0.88947 1.03699 1.03353 1.20927 0.92418 0.75435 1.09481 1.50839 1.30666 1.12488 1.19235 1.82418 1.06709 1.06903 1.12512 1.77821 1.14895 1.05653 1.05751 1.74847 1.11598 1.25135 1.09847 1.22729 0.93233 0.84139 0.89958 1.59027 1.07072 1.52844 0.99649 1.20497 0.93639 0.97620 0.84082 1.20868 1.17008 1.03430 1.14828 0.90158 1.24795 0.94317 0.96029 0.97345 1.69871 1.18110 1.35023 1.29738 0.86960 0.78127 0.83821 0.81512 1.19962 1.20834 1.18844 1.22057 0.89721 0.94840 0.99445 1.22120 0.89766 0.97457 0.97481 1.62116 1.08341 1.02709 1.53033 1.22897 0.98697 0.88814 1.01403 1.22662 0.86035 0.98189 0.94266 1.87975 1.52540 1.27500 1.62634 1.22655 0.95626 0.81217 1.01730 1.22767 0.92388 1.00536 0.95273 1.23540 1.03445 0.97930 0.93721 1.23421 1.02787 0.98029 0.95709 0.92053 0.90019 0.89695 0.94030 0.96511 0.92370 0.93289 0.90508 0.89283 0.93232 0.93605 0.89168 0.92286 0.88510 0.92319 0.88574 0.89397 0.93726 0.87085 0.86937 0.87274 0.87471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.39 9.80 37.16 0.36 -1.03 16 2 C 0.10 1.57 3.00 -131.82 -0.40 1.17 16 3 N -0.34 -6.42 3.89 -49.13 -0.19 -6.61 16 4 N -0.10 -2.05 13.64 60.35 0.82 -1.22 16 5 N -0.05 -1.00 13.38 60.35 0.81 -0.20 16 6 N -0.36 -8.07 11.82 30.10 0.36 -7.71 16 7 C 0.47 9.61 5.71 -320.41 -1.83 7.78 16 8 N -0.46 -8.72 3.68 -176.23 -0.65 -9.36 16 9 C 0.17 3.73 3.61 -4.98 -0.02 3.72 16 10 C -0.52 -13.94 9.28 -34.44 -0.32 -14.26 16 11 H 0.08 2.31 7.49 -52.49 -0.39 1.92 16 12 C 0.08 2.18 5.47 -17.82 -0.10 2.08 16 13 N -0.89 -26.21 13.96 55.43 0.77 -25.44 16 14 Si 0.87 20.72 27.52 -169.99 -4.68 16.05 16 15 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 H -0.26 -6.11 6.50 56.52 0.37 -5.74 16 18 C 0.07 1.03 4.44 -3.83 -0.02 1.02 16 19 C 0.06 0.79 4.91 -3.83 -0.02 0.78 16 20 N -0.54 -6.26 4.73 -234.31 -1.11 -7.37 16 21 C 0.01 0.12 5.44 -3.71 -0.02 0.10 16 22 C 0.07 0.66 7.01 37.21 0.26 0.92 16 23 O -0.39 -4.42 10.83 -35.23 -0.38 -4.81 16 24 C 0.06 0.59 7.01 37.21 0.26 0.86 16 25 C 0.02 0.19 5.65 -3.71 -0.02 0.17 16 26 C -0.15 -2.22 10.07 -26.70 -0.27 -2.49 16 27 C -0.16 -2.07 9.98 -26.69 -0.27 -2.34 16 28 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.08 0.75 8.10 -51.92 -0.42 0.33 16 30 H 0.08 1.10 6.90 -51.93 -0.36 0.74 16 31 H 0.04 0.89 5.51 -51.93 -0.29 0.60 16 32 H 0.02 0.41 6.80 -51.93 -0.35 0.06 16 33 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 34 H 0.05 0.79 6.49 -51.93 -0.34 0.45 16 35 H 0.08 1.12 8.05 -51.93 -0.42 0.70 16 36 H 0.09 1.13 8.04 -51.93 -0.42 0.71 16 37 H 0.05 0.74 6.31 -51.93 -0.33 0.41 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.09 1.05 6.38 -51.93 -0.33 0.71 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.10 0.70 8.14 -51.92 -0.42 0.28 16 44 H 0.09 0.76 8.09 -51.93 -0.42 0.34 16 45 H 0.04 0.49 8.14 -51.93 -0.42 0.06 16 46 H 0.11 2.11 7.72 -51.93 -0.40 1.71 16 47 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 48 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 49 H 0.11 1.50 8.05 -51.92 -0.42 1.08 16 LS Contribution 391.02 15.07 5.89 5.89 Total: -1.00 -31.96 391.02 -8.60 -40.55 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -7.86 Total: 1.76 kcal Atomic # 6 Polarization: 0.86 SS G_CDS: -2.39 Total: -1.53 kcal Atomic # 7 Polarization: -58.73 SS G_CDS: 0.81 Total: -57.92 kcal Atomic # 8 Polarization: -4.42 SS G_CDS: -0.38 Total: -4.81 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -4.68 Total: 16.05 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.96 -8.60 -40.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650050474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.130 kcal (2) G-P(sol) polarization free energy of solvation -31.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 138.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.552 kcal (6) G-S(sol) free energy of system = (1) + (5) 129.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds