Wall clock time and date at job start Tue Mar 31 2020 19:37:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 115.54350 * 2 1 4 4 N 1.40591 * 127.38046 * 235.70177 * 3 2 1 5 5 N 1.28912 * 106.80985 * 180.02562 * 4 3 2 6 6 N 1.28420 * 110.31899 * 359.73491 * 5 4 3 7 7 C 1.31467 * 110.50984 * 0.45203 * 6 5 4 8 8 N 1.38387 * 126.43926 * 179.82029 * 7 6 5 9 9 C 1.46894 * 110.99677 * 305.55685 * 8 7 6 10 10 C 1.50698 * 109.47319 * 291.78632 * 9 8 7 11 11 H 1.07990 * 120.00191 * 356.07519 * 10 9 8 12 12 C 1.37881 * 119.99838 * 175.79785 * 10 9 8 13 13 N 1.31512 * 119.99912 * 185.51943 * 12 10 9 14 14 Si 1.86799 * 120.00034 * 5.51896 * 12 10 9 15 15 H 1.48495 * 109.47152 * 90.00047 * 14 12 10 16 16 H 1.48501 * 109.47291 * 209.99893 * 14 12 10 17 17 H 1.48501 * 109.47240 * 330.00140 * 14 12 10 18 18 C 1.46898 * 110.99857 * 69.51396 * 8 7 6 19 19 C 1.52996 * 109.47210 * 170.00136 * 18 8 7 20 20 N 1.46896 * 109.47483 * 179.97438 * 19 18 8 21 21 C 1.47014 * 111.00179 * 293.63539 * 20 19 18 22 22 C 1.53100 * 109.25911 * 177.60496 * 21 20 19 23 23 O 1.43022 * 109.25471 * 56.84802 * 22 21 20 24 24 C 1.43012 * 113.73727 * 301.32540 * 23 22 21 25 25 C 1.47015 * 111.00119 * 169.99471 * 20 19 18 26 26 C 1.52996 * 117.50387 * 145.67290 * 2 1 3 27 27 C 1.52999 * 117.49921 * 214.33498 * 2 1 3 28 28 H 1.08997 * 109.47414 * 64.65685 * 1 2 3 29 29 H 1.09007 * 109.46869 * 184.65710 * 1 2 3 30 30 H 1.08994 * 109.47116 * 304.65418 * 1 2 3 31 31 H 1.09004 * 109.47067 * 171.78701 * 9 8 7 32 32 H 1.09003 * 109.47357 * 51.79510 * 9 8 7 33 33 H 0.97006 * 119.99907 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.47231 * 289.99713 * 18 8 7 35 35 H 1.08996 * 109.47121 * 50.00037 * 18 8 7 36 36 H 1.09004 * 109.46678 * 299.99915 * 19 18 8 37 37 H 1.09006 * 109.47128 * 59.99368 * 19 18 8 38 38 H 1.09002 * 109.50164 * 297.54109 * 21 20 19 39 39 H 1.09001 * 109.50176 * 57.66978 * 21 20 19 40 40 H 1.08997 * 109.50663 * 296.91679 * 22 21 20 41 41 H 1.08996 * 109.53986 * 176.80345 * 22 21 20 42 42 H 1.08999 * 109.51198 * 298.73956 * 24 23 22 43 43 H 1.09007 * 109.53907 * 178.62709 * 24 23 22 44 44 H 1.08999 * 109.51255 * 302.33340 * 25 20 19 45 45 H 1.09000 * 109.50478 * 62.41865 * 25 20 19 46 46 H 1.08995 * 117.50238 * 215.00656 * 26 2 1 47 47 H 1.09005 * 117.49529 * 0.02562 * 26 2 1 48 48 H 1.08993 * 117.49960 * 359.97438 * 27 2 1 49 49 H 1.09008 * 117.49689 * 144.97059 * 27 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.1617 1.3218 0.0000 4 7 3.0978 1.8205 -0.9229 5 7 3.3883 3.0193 -0.5484 6 7 2.7291 3.3281 0.5095 7 6 1.9699 2.3240 0.8887 8 7 1.1281 2.2989 1.9868 9 6 1.8555 2.6435 3.2156 10 6 2.8326 1.5448 3.5459 11 1 2.8617 0.6490 2.9435 12 6 3.6935 1.6858 4.6136 13 7 4.6184 0.7779 4.8370 14 14 3.5460 3.1664 5.7431 15 1 2.6146 2.8496 6.8554 16 1 4.8825 3.5016 6.2969 17 1 3.0237 4.3249 4.9749 18 6 -0.0226 3.1903 1.7885 19 6 -1.0490 2.9525 2.8979 20 7 -2.1994 3.8443 2.7000 21 6 -1.8137 5.2508 2.8851 22 6 -3.0248 6.1467 2.6118 23 8 -4.0999 5.7621 3.4730 24 6 -4.5016 4.3983 3.3186 25 6 -3.3056 3.4847 3.5992 26 6 2.2366 -1.1207 0.7653 27 6 2.2365 -1.1207 -0.7655 28 1 -0.3634 0.4399 -0.9287 29 1 -0.3633 -1.0244 0.0834 30 1 -0.3633 0.5843 0.8453 31 1 1.1478 2.7592 4.0365 32 1 2.3962 3.5784 3.0677 33 1 5.2242 0.8773 5.5880 34 1 0.3117 4.2274 1.8191 35 1 -0.4793 2.9841 0.8206 36 1 -1.3832 1.9154 2.8674 37 1 -0.5921 3.1587 3.8659 38 1 -1.4722 5.4028 3.9090 39 1 -1.0111 5.5023 2.1919 40 1 -3.3332 6.0346 1.5724 41 1 -2.7596 7.1865 2.8027 42 1 -4.8530 4.2354 2.2998 43 1 -5.3043 4.1729 4.0209 44 1 -3.5919 2.4471 3.4273 45 1 -2.9877 3.6078 4.6345 46 1 3.1714 -0.8746 1.2688 47 1 1.6113 -1.8583 1.2684 48 1 1.6113 -1.8581 -1.2687 49 1 3.1712 -0.8744 -1.2694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650050474.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:40 Heat of formation + Delta-G solvation = 106.756621 kcal Electronic energy + Delta-G solvation = -30944.078527 eV Core-core repulsion = 26944.954042 eV Total energy + Delta-G solvation = -3999.124485 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -44.01242 -40.63721 -39.32805 -39.02082 -36.68566 -34.82457 -33.98511 -32.66662 -32.13999 -31.16789 -29.61429 -29.41569 -26.89759 -25.41581 -25.00108 -24.76154 -23.73344 -23.06643 -21.97607 -21.32269 -21.16427 -19.23133 -18.27160 -17.78622 -17.68434 -17.18448 -17.07332 -16.54823 -16.12679 -16.06265 -15.95541 -15.68926 -15.58906 -15.04389 -14.85219 -14.59235 -14.45827 -14.36929 -14.13611 -13.91294 -13.46703 -13.37388 -13.23639 -13.04426 -12.91892 -12.62801 -12.57205 -12.39142 -12.34900 -12.27799 -12.17256 -12.03891 -11.90742 -11.67177 -11.50632 -11.37126 -11.12579 -10.82530 -10.76515 -10.64591 -9.88628 -9.44776 -8.36797 -6.40376 -0.05449 0.68677 1.18968 1.27639 1.31911 1.38991 2.25709 2.28556 2.43764 2.88671 2.97539 3.02634 3.37716 3.45610 3.63539 3.75069 3.82081 3.83127 3.97710 4.03574 4.20780 4.23949 4.30644 4.33270 4.35774 4.37111 4.40369 4.55023 4.62354 4.63652 4.72252 4.75132 4.76951 4.79961 4.83845 4.85556 4.90383 4.90544 4.93645 5.04279 5.08118 5.17699 5.29121 5.39165 5.54342 5.85837 5.91576 5.99708 6.19879 6.27238 6.64357 7.22225 7.41682 8.78638 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.008744 B = 0.004648 C = 0.003625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3201.535404 B = 6022.271285 C = 7722.912431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.076 3.924 3 N -0.329 5.329 4 N -0.102 5.102 5 N -0.065 5.065 6 N -0.384 5.384 7 C 0.454 3.546 8 N -0.449 5.449 9 C 0.178 3.822 10 C -0.521 4.521 11 H 0.048 0.952 12 C 0.022 3.978 13 N -0.937 5.937 14 Si 0.929 3.071 15 H -0.254 1.254 16 H -0.287 1.287 17 H -0.253 1.253 18 C 0.072 3.928 19 C 0.070 3.930 20 N -0.534 5.534 21 C 0.008 3.992 22 C 0.068 3.932 23 O -0.406 6.406 24 C 0.064 3.936 25 C 0.017 3.983 26 C -0.159 4.159 27 C -0.133 4.133 28 H 0.072 0.928 29 H 0.117 0.883 30 H 0.073 0.927 31 H 0.062 0.938 32 H -0.002 1.002 33 H 0.267 0.733 34 H 0.042 0.958 35 H 0.090 0.910 36 H 0.100 0.900 37 H 0.033 0.967 38 H 0.033 0.967 39 H 0.085 0.915 40 H 0.066 0.934 41 H 0.109 0.891 42 H 0.066 0.934 43 H 0.116 0.884 44 H 0.105 0.895 45 H 0.035 0.965 46 H 0.058 0.942 47 H 0.139 0.861 48 H 0.157 0.843 49 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.991 0.748 -6.220 20.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.008 4.008 3 N -0.125 5.125 4 N -0.088 5.088 5 N -0.061 5.061 6 N -0.242 5.242 7 C 0.088 3.912 8 N -0.176 5.176 9 C 0.052 3.948 10 C -0.559 4.559 11 H 0.066 0.934 12 C -0.177 4.177 13 N -0.577 5.577 14 Si 0.752 3.248 15 H -0.178 1.178 16 H -0.213 1.213 17 H -0.177 1.177 18 C -0.055 4.055 19 C -0.058 4.058 20 N -0.260 5.260 21 C -0.120 4.120 22 C -0.009 4.009 23 O -0.325 6.325 24 C -0.013 4.013 25 C -0.111 4.111 26 C -0.198 4.198 27 C -0.170 4.170 28 H 0.090 0.910 29 H 0.135 0.865 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.016 0.984 33 H 0.076 0.924 34 H 0.060 0.940 35 H 0.108 0.892 36 H 0.118 0.882 37 H 0.051 0.949 38 H 0.052 0.948 39 H 0.104 0.896 40 H 0.084 0.916 41 H 0.127 0.873 42 H 0.085 0.915 43 H 0.134 0.866 44 H 0.124 0.876 45 H 0.053 0.947 46 H 0.077 0.923 47 H 0.157 0.843 48 H 0.175 0.825 49 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -19.363 0.917 -7.259 20.700 hybrid contribution 1.390 0.612 1.884 2.420 sum -17.973 1.528 -5.375 18.822 Atomic orbital electron populations 1.21608 0.85829 1.05915 1.03410 1.21733 0.94449 0.73873 1.10735 1.51142 1.29704 1.13423 1.18274 1.82299 1.06859 1.06527 1.13105 1.77775 1.15694 1.06428 1.06200 1.74741 1.12455 1.26648 1.10347 1.22896 0.93435 0.84337 0.90507 1.59021 1.06920 1.53633 0.98047 1.20216 0.93351 0.94974 0.86224 1.21094 1.17616 1.03327 1.13898 0.93417 1.25631 0.94032 0.98894 0.99135 1.70018 1.19496 1.37393 1.30781 0.86003 0.78266 0.80539 0.79976 1.17841 1.21280 1.17735 1.22144 0.88667 0.93677 1.01036 1.21975 0.89804 0.98516 0.95539 1.62140 1.07873 1.02445 1.53498 1.22926 0.99411 0.89136 1.00526 1.22706 0.85142 0.98513 0.94493 1.87956 1.52729 1.28710 1.63078 1.22817 0.95597 0.80005 1.02863 1.22880 0.91975 1.01881 0.94323 1.23450 1.01794 0.98999 0.95536 1.23573 1.02417 0.97135 0.93903 0.90954 0.86450 0.90841 0.91991 0.98365 0.92403 0.94003 0.89209 0.88154 0.94890 0.94847 0.89623 0.91584 0.87253 0.91527 0.86565 0.87629 0.94698 0.92284 0.84273 0.82541 0.89022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 9.80 71.98 0.71 -1.55 16 2 C 0.08 2.22 3.00 3.60 0.01 2.23 16 3 N -0.33 -12.62 3.89 -309.36 -1.20 -13.82 16 4 N -0.10 -4.24 13.64 37.02 0.50 -3.74 16 5 N -0.07 -2.96 13.38 37.02 0.50 -2.47 16 6 N -0.38 -17.73 11.82 -58.69 -0.69 -18.42 16 7 C 0.45 18.96 5.71 260.65 1.49 20.44 16 8 N -0.45 -16.95 3.68 -711.47 -2.62 -19.57 16 9 C 0.18 8.01 3.61 85.56 0.31 8.32 16 10 C -0.52 -28.46 9.28 25.60 0.24 -28.22 16 11 H 0.05 2.87 7.49 -2.92 -0.02 2.85 16 12 C 0.02 1.25 5.47 84.66 0.46 1.71 16 13 N -0.94 -57.06 13.96 21.45 0.30 -56.76 16 14 Si 0.93 42.89 27.52 68.60 1.89 44.78 16 15 H -0.25 -10.88 7.11 99.48 0.71 -10.17 16 16 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 17 H -0.25 -11.19 6.50 99.48 0.65 -10.54 16 18 C 0.07 2.13 4.44 86.30 0.38 2.51 16 19 C 0.07 1.74 4.91 86.30 0.42 2.16 16 20 N -0.53 -11.36 4.73 -895.21 -4.23 -15.59 16 21 C 0.01 0.18 5.44 86.31 0.47 0.65 16 22 C 0.07 1.25 7.01 72.02 0.50 1.75 16 23 O -0.41 -8.37 10.83 -148.98 -1.61 -9.99 16 24 C 0.06 0.99 7.01 72.02 0.50 1.50 16 25 C 0.02 0.30 5.65 86.31 0.49 0.79 16 26 C -0.16 -4.75 10.07 30.62 0.31 -4.44 16 27 C -0.13 -3.13 9.98 30.62 0.31 -2.83 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.12 1.59 8.10 -2.38 -0.02 1.57 16 30 H 0.07 1.70 6.90 -2.39 -0.02 1.68 16 31 H 0.06 2.57 5.51 -2.38 -0.01 2.56 16 32 H 0.00 -0.08 6.80 -2.39 -0.02 -0.09 16 33 H 0.27 15.31 8.31 -92.70 -0.77 14.54 16 34 H 0.04 1.32 6.49 -2.39 -0.02 1.30 16 35 H 0.09 2.45 8.05 -2.39 -0.02 2.43 16 36 H 0.10 2.29 8.04 -2.39 -0.02 2.27 16 37 H 0.03 0.94 6.31 -2.38 -0.02 0.92 16 38 H 0.03 0.80 8.14 -2.39 -0.02 0.78 16 39 H 0.09 1.91 6.38 -2.39 -0.02 1.89 16 40 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 41 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.12 1.33 8.14 -2.38 -0.02 1.31 16 44 H 0.11 1.48 8.09 -2.39 -0.02 1.46 16 45 H 0.03 0.69 8.14 -2.39 -0.02 0.67 16 46 H 0.06 2.40 7.72 -2.39 -0.02 2.38 16 47 H 0.14 3.31 8.14 -2.38 -0.02 3.29 16 48 H 0.16 2.24 8.14 -2.39 -0.02 2.22 16 49 H 0.09 2.49 8.05 -2.38 -0.02 2.47 16 Total: -1.00 -72.73 391.02 0.32 -72.42 By element: Atomic # 1 Polarization: 17.24 SS G_CDS: 0.89 Total: 18.13 kcal Atomic # 6 Polarization: -1.57 SS G_CDS: 6.60 Total: 5.03 kcal Atomic # 7 Polarization: -122.93 SS G_CDS: -7.45 Total: -130.37 kcal Atomic # 8 Polarization: -8.37 SS G_CDS: -1.61 Total: -9.99 kcal Atomic # 14 Polarization: 42.89 SS G_CDS: 1.89 Total: 44.78 kcal Total: -72.73 0.32 -72.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650050474.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 179.175 kcal (2) G-P(sol) polarization free energy of solvation -72.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds