Wall clock time and date at job start Tue Mar 31 2020 19:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00140 * 2 1 4 4 C 1.53001 * 109.46914 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46884 * 180.02562 * 4 3 2 6 6 C 1.34257 * 125.75457 * 125.32000 * 5 4 3 7 7 C 1.38043 * 107.41880 * 180.14381 * 6 5 4 8 8 C 1.47429 * 126.41725 * 179.86832 * 7 6 5 9 9 O 1.21603 * 119.99611 * 42.85183 * 8 7 6 10 10 N 1.34770 * 119.99976 * 222.85178 * 8 7 6 11 11 C 1.46926 * 120.63185 * 356.31648 * 10 8 7 12 12 C 1.53193 * 108.77640 * 126.37011 * 11 10 8 13 13 C 1.53043 * 109.31438 * 54.63168 * 12 11 10 14 14 C 1.53034 * 109.53751 * 298.63657 * 13 12 11 15 15 H 1.09005 * 109.52526 * 301.39810 * 14 13 12 16 16 C 1.53005 * 109.49498 * 181.31818 * 14 13 12 17 17 N 1.46504 * 109.46987 * 175.16411 * 16 14 13 18 18 C 1.36937 * 119.99952 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99619 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00210 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99921 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46908 * 270.00413 * 22 20 18 24 24 H 1.48501 * 109.46738 * 30.00102 * 22 20 18 25 25 H 1.48499 * 109.47152 * 149.99975 * 22 20 18 26 26 C 1.46932 * 120.63188 * 176.28798 * 10 8 7 27 27 C 1.41296 * 107.16839 * 359.60395 * 7 6 5 28 28 N 1.30444 * 108.01914 * 0.24312 * 27 7 6 29 29 H 1.08994 * 109.47065 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46806 * 300.00322 * 1 2 3 31 31 H 1.08998 * 109.46828 * 59.99733 * 1 2 3 32 32 H 1.08999 * 109.47491 * 60.00155 * 3 2 1 33 33 H 1.08996 * 109.47545 * 300.00051 * 3 2 1 34 34 H 1.08991 * 109.47476 * 60.00122 * 4 3 2 35 35 H 1.08998 * 109.47347 * 299.99631 * 4 3 2 36 36 H 1.08004 * 126.29341 * 359.97438 * 6 5 4 37 37 H 1.08999 * 109.58604 * 246.15025 * 11 10 8 38 38 H 1.08997 * 109.58427 * 6.43679 * 11 10 8 39 39 H 1.09001 * 109.49722 * 174.58676 * 12 11 10 40 40 H 1.09004 * 109.49268 * 294.64945 * 12 11 10 41 41 H 1.09006 * 109.45742 * 178.61488 * 13 12 11 42 42 H 1.08993 * 109.45640 * 58.65801 * 13 12 11 43 43 H 1.08999 * 109.47480 * 55.16266 * 16 14 13 44 44 H 1.09002 * 109.46813 * 295.16054 * 16 14 13 45 45 H 0.96998 * 120.00022 * 359.97438 * 17 16 14 46 46 H 0.97001 * 119.99815 * 0.02562 * 21 20 18 47 47 H 1.08999 * 109.58294 * 113.84342 * 26 10 8 48 48 H 1.08997 * 109.70150 * 353.49327 * 26 10 8 49 49 H 1.07997 * 125.98507 * 180.27674 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0263 2.9828 0.8889 7 6 5.3273 4.2833 0.5372 8 6 6.2638 5.1839 1.2339 9 8 7.3373 4.7637 1.6208 10 7 5.9300 6.4730 1.4420 11 6 4.6725 7.0159 0.9104 12 6 3.8917 7.6650 2.0575 13 6 4.7795 8.7003 2.7519 14 6 6.0117 8.0072 3.3378 15 1 5.6963 7.2386 4.0435 16 6 6.8820 9.0376 4.0601 17 7 8.0000 8.3570 4.7183 18 6 8.9178 9.0808 5.4318 19 1 8.8176 10.1534 5.5089 20 6 9.9767 8.4359 6.0559 21 7 10.0984 7.1287 5.9623 22 14 11.2291 9.4233 7.0286 23 1 12.3362 9.8399 6.1308 24 1 10.5744 10.6280 7.5991 25 1 11.7721 8.5870 8.1291 26 6 6.8165 7.3620 2.2052 27 6 4.5746 4.5875 -0.6192 28 7 3.8683 3.5355 -0.9293 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8568 0.6438 -0.8908 35 1 3.8575 0.6435 0.8891 36 1 5.4336 2.4366 1.7270 37 1 4.8907 7.7636 0.1479 38 1 4.0823 6.2102 0.4738 39 1 3.0028 8.1555 1.6608 40 1 3.5953 6.8995 2.7747 41 1 4.2180 9.1811 3.5530 42 1 5.0951 9.4517 2.0283 43 1 6.2836 9.5591 4.8070 44 1 7.2688 9.7566 3.3378 45 1 8.0897 7.3937 4.6494 46 1 9.4483 6.6160 5.4569 47 1 7.2096 8.1379 1.5483 48 1 7.6414 6.7864 2.6251 49 1 4.5829 5.5262 -1.1530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661837638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:36 Heat of formation + Delta-G solvation = 14.433561 kcal Electronic energy + Delta-G solvation = -29032.186791 eV Core-core repulsion = 24996.766127 eV Total energy + Delta-G solvation = -4035.420664 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -41.75418 -39.75671 -38.50261 -37.44915 -35.12743 -34.33116 -32.94451 -31.71657 -30.76532 -30.01812 -29.18731 -26.91163 -25.57260 -25.30360 -23.97274 -23.08811 -22.45065 -21.48389 -21.05086 -20.10520 -19.14839 -17.79340 -17.19082 -16.95584 -16.82327 -16.21202 -15.89388 -15.75937 -15.24568 -14.89622 -14.76037 -14.50634 -14.35321 -14.07800 -13.86637 -13.69510 -13.44850 -13.27819 -12.97612 -12.77187 -12.65104 -12.45689 -12.35794 -12.20152 -11.92084 -11.55047 -11.25362 -11.09950 -10.77125 -10.65199 -10.60112 -10.42144 -10.31149 -10.19020 -9.93388 -9.87121 -9.71318 -9.08324 -8.90940 -8.80894 -8.44799 -6.91684 -6.01197 -3.01160 1.34833 1.82612 2.01505 2.97338 3.20266 3.32245 3.56512 3.62297 3.76014 4.06383 4.32076 4.44913 4.51187 4.66089 4.68888 4.75908 4.78234 4.80089 4.80269 4.90370 4.96461 5.03619 5.09692 5.13825 5.19158 5.26682 5.33392 5.39052 5.49709 5.64055 5.70212 5.78895 5.83484 5.94140 6.05033 6.08680 6.10472 6.13048 6.37348 6.39427 6.48593 6.52161 6.66410 6.74676 6.84809 7.21686 7.55141 7.88671 8.35512 8.84957 9.32274 10.18511 10.33385 11.47339 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017327 B = 0.002197 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.602452 B =12740.479065 C =13395.702583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.135 3.865 5 N -0.363 5.363 6 C 0.121 3.879 7 C -0.278 4.278 8 C 0.590 3.410 9 O -0.534 6.534 10 N -0.605 5.605 11 C 0.099 3.901 12 C -0.132 4.132 13 C -0.112 4.112 14 C -0.108 4.108 15 H 0.072 0.928 16 C 0.166 3.834 17 N -0.744 5.744 18 C -0.333 4.333 19 H 0.064 0.936 20 C -0.046 4.046 21 N -0.943 5.943 22 Si 1.083 2.917 23 H -0.296 1.296 24 H -0.296 1.296 25 H -0.288 1.288 26 C 0.123 3.877 27 C 0.080 3.920 28 N -0.297 5.297 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.044 0.956 32 H 0.056 0.944 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.188 0.812 37 H 0.068 0.932 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.065 0.935 41 H 0.065 0.935 42 H 0.064 0.936 43 H 0.022 0.978 44 H 0.021 0.979 45 H 0.368 0.632 46 H 0.257 0.743 47 H 0.066 0.934 48 H 0.099 0.901 49 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.543 -9.521 -15.751 29.102 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.026 4.026 4 C 0.013 3.987 5 N -0.143 5.143 6 C -0.028 4.028 7 C -0.293 4.293 8 C 0.377 3.623 9 O -0.410 6.410 10 N -0.337 5.337 11 C -0.024 4.024 12 C -0.171 4.171 13 C -0.150 4.150 14 C -0.128 4.128 15 H 0.090 0.910 16 C 0.038 3.962 17 N -0.390 5.390 18 C -0.464 4.464 19 H 0.082 0.918 20 C -0.244 4.244 21 N -0.588 5.588 22 Si 0.914 3.086 23 H -0.223 1.223 24 H -0.222 1.222 25 H -0.214 1.214 26 C 0.001 3.999 27 C -0.107 4.107 28 N -0.117 5.117 29 H 0.109 0.891 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.128 0.872 36 H 0.205 0.795 37 H 0.086 0.914 38 H 0.108 0.892 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.084 0.916 42 H 0.083 0.917 43 H 0.040 0.960 44 H 0.039 0.961 45 H 0.201 0.799 46 H 0.068 0.932 47 H 0.085 0.915 48 H 0.118 0.882 49 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -21.409 -10.427 -15.421 28.370 hybrid contribution -1.114 0.544 -0.381 1.297 sum -22.523 -9.882 -15.802 29.234 Atomic orbital electron populations 1.22788 0.79854 1.03185 1.00415 1.87784 1.20652 1.26849 1.95610 1.22643 0.92445 0.85421 1.02108 1.21487 0.92713 0.78659 1.05798 1.48238 1.33037 1.12006 1.21061 1.22928 0.91354 0.93843 0.94683 1.20274 1.09707 0.95945 1.03405 1.17320 0.85363 0.81062 0.78568 1.90848 1.23148 1.75372 1.51673 1.47972 1.21610 1.09843 1.54315 1.22004 0.85297 0.98867 0.96266 1.21897 0.98157 0.99015 0.97990 1.21513 0.95976 0.97514 0.99985 1.21705 0.95472 0.98755 0.96823 0.90979 1.20571 0.88757 0.93013 0.93849 1.42421 1.28149 1.06152 1.62295 1.20036 1.05959 0.92273 1.28170 0.91805 1.25777 0.99632 0.97706 1.01293 1.70823 1.38599 1.05396 1.43997 0.83193 0.75373 0.73848 0.76136 1.22344 1.22243 1.21438 1.21685 0.92874 0.92878 0.92434 1.24109 0.93615 0.97711 0.95288 1.77125 1.24665 0.96733 1.13192 0.89113 0.93734 0.93693 0.92523 0.91475 0.88325 0.87243 0.79540 0.91367 0.89233 0.90976 0.91664 0.91590 0.91695 0.96040 0.96144 0.79851 0.93186 0.91545 0.88239 0.79066 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.28 16 2 O -0.39 -2.87 10.70 -35.23 -0.38 -3.25 16 3 C 0.05 0.35 6.11 37.16 0.23 0.57 16 4 C 0.13 0.89 6.86 -4.04 -0.03 0.86 16 5 N -0.36 -3.38 3.65 -60.81 -0.22 -3.61 16 6 C 0.12 1.28 11.44 -16.56 -0.19 1.09 16 7 C -0.28 -3.42 5.33 -105.06 -0.56 -3.98 16 8 C 0.59 9.32 7.59 -12.52 -0.09 9.22 16 9 O -0.53 -10.93 16.52 5.27 0.09 -10.85 16 10 N -0.60 -8.58 2.97 -174.04 -0.52 -9.10 16 11 C 0.10 1.00 5.71 -3.71 -0.02 0.97 16 12 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 13 C -0.11 -1.37 5.17 -26.69 -0.14 -1.51 16 14 C -0.11 -1.77 2.38 -90.50 -0.21 -1.98 16 15 H 0.07 1.29 8.14 -51.93 -0.42 0.87 16 16 C 0.17 3.41 5.65 -4.04 -0.02 3.39 16 17 N -0.74 -19.44 5.37 -59.90 -0.32 -19.76 16 18 C -0.33 -9.74 9.99 -15.06 -0.15 -9.89 16 19 H 0.06 1.83 7.83 -52.48 -0.41 1.42 16 20 C -0.05 -1.40 5.50 -17.43 -0.10 -1.49 16 21 N -0.94 -30.41 13.70 55.49 0.76 -29.65 16 22 Si 1.08 26.83 29.92 -169.99 -5.09 21.74 16 23 H -0.30 -7.12 7.11 56.52 0.40 -6.71 16 24 H -0.30 -6.88 7.11 56.52 0.40 -6.47 16 25 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 26 C 0.12 2.08 5.50 -3.71 -0.02 2.06 16 27 C 0.08 0.81 9.57 -16.98 -0.16 0.65 16 28 N -0.30 -3.13 12.33 30.86 0.38 -2.75 16 29 H 0.09 0.32 8.14 -51.93 -0.42 -0.11 16 30 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.11 0.53 8.06 -51.93 -0.42 0.11 16 36 H 0.19 1.61 8.06 -52.48 -0.42 1.19 16 37 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.09 0.78 4.14 -51.93 -0.22 0.57 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.37 10.01 5.72 -40.82 -0.23 9.77 16 46 H 0.26 8.26 6.77 -40.82 -0.28 7.99 16 47 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.10 2.09 6.23 -51.93 -0.32 1.77 16 49 H 0.19 1.44 7.11 -52.49 -0.37 1.06 16 LS Contribution 396.44 15.07 5.97 5.97 Total: -1.00 -37.46 396.44 -7.65 -45.11 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -7.81 Total: 6.37 kcal Atomic # 6 Polarization: 0.28 SS G_CDS: -0.52 Total: -0.24 kcal Atomic # 7 Polarization: -64.94 SS G_CDS: 0.08 Total: -64.86 kcal Atomic # 8 Polarization: -13.81 SS G_CDS: -0.29 Total: -14.10 kcal Atomic # 14 Polarization: 26.83 SS G_CDS: -5.09 Total: 21.74 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -37.46 -7.65 -45.11 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661837638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.544 kcal (2) G-P(sol) polarization free energy of solvation -37.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.110 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds