Wall clock time and date at job start Tue Mar 31 2020 19:14:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42896 * 114.00140 * 2 1 4 4 C 1.53001 * 109.46914 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46884 * 180.02562 * 4 3 2 6 6 C 1.34257 * 125.75457 * 125.32000 * 5 4 3 7 7 C 1.38043 * 107.41880 * 180.14381 * 6 5 4 8 8 C 1.47429 * 126.41725 * 179.86832 * 7 6 5 9 9 O 1.21603 * 119.99611 * 42.85183 * 8 7 6 10 10 N 1.34770 * 119.99976 * 222.85178 * 8 7 6 11 11 C 1.46926 * 120.63185 * 356.31648 * 10 8 7 12 12 C 1.53193 * 108.77640 * 126.37011 * 11 10 8 13 13 C 1.53043 * 109.31438 * 54.63168 * 12 11 10 14 14 C 1.53034 * 109.53751 * 298.63657 * 13 12 11 15 15 H 1.09005 * 109.52526 * 301.39810 * 14 13 12 16 16 C 1.53005 * 109.49498 * 181.31818 * 14 13 12 17 17 N 1.46504 * 109.46987 * 175.16411 * 16 14 13 18 18 C 1.36937 * 119.99952 * 180.02562 * 17 16 14 19 19 H 1.08003 * 119.99619 * 359.97438 * 18 17 16 20 20 C 1.38807 * 119.99858 * 179.97438 * 18 17 16 21 21 N 1.31621 * 120.00210 * 359.97438 * 20 18 17 22 22 Si 1.86806 * 119.99921 * 179.97438 * 20 18 17 23 23 H 1.48498 * 109.46908 * 270.00413 * 22 20 18 24 24 H 1.48501 * 109.46738 * 30.00102 * 22 20 18 25 25 H 1.48499 * 109.47152 * 149.99975 * 22 20 18 26 26 C 1.46932 * 120.63188 * 176.28798 * 10 8 7 27 27 C 1.41296 * 107.16839 * 359.60395 * 7 6 5 28 28 N 1.30444 * 108.01914 * 0.24312 * 27 7 6 29 29 H 1.08994 * 109.47065 * 179.97438 * 1 2 3 30 30 H 1.08995 * 109.46806 * 300.00322 * 1 2 3 31 31 H 1.08998 * 109.46828 * 59.99733 * 1 2 3 32 32 H 1.08999 * 109.47491 * 60.00155 * 3 2 1 33 33 H 1.08996 * 109.47545 * 300.00051 * 3 2 1 34 34 H 1.08991 * 109.47476 * 60.00122 * 4 3 2 35 35 H 1.08998 * 109.47347 * 299.99631 * 4 3 2 36 36 H 1.08004 * 126.29341 * 359.97438 * 6 5 4 37 37 H 1.08999 * 109.58604 * 246.15025 * 11 10 8 38 38 H 1.08997 * 109.58427 * 6.43679 * 11 10 8 39 39 H 1.09001 * 109.49722 * 174.58676 * 12 11 10 40 40 H 1.09004 * 109.49268 * 294.64945 * 12 11 10 41 41 H 1.09006 * 109.45742 * 178.61488 * 13 12 11 42 42 H 1.08993 * 109.45640 * 58.65801 * 13 12 11 43 43 H 1.08999 * 109.47480 * 55.16266 * 16 14 13 44 44 H 1.09002 * 109.46813 * 295.16054 * 16 14 13 45 45 H 0.96998 * 120.00022 * 359.97438 * 17 16 14 46 46 H 0.97001 * 119.99815 * 0.02562 * 21 20 18 47 47 H 1.08999 * 109.58294 * 113.84342 * 26 10 8 48 48 H 1.08997 * 109.70150 * 353.49327 * 26 10 8 49 49 H 1.07997 * 125.98507 * 180.27674 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 7 4.1314 2.5229 0.0000 6 6 5.0263 2.9828 0.8889 7 6 5.3273 4.2833 0.5372 8 6 6.2638 5.1839 1.2339 9 8 7.3373 4.7637 1.6208 10 7 5.9300 6.4730 1.4420 11 6 4.6725 7.0159 0.9104 12 6 3.8917 7.6650 2.0575 13 6 4.7795 8.7003 2.7519 14 6 6.0117 8.0072 3.3378 15 1 5.6963 7.2386 4.0435 16 6 6.8820 9.0376 4.0601 17 7 8.0000 8.3570 4.7183 18 6 8.9178 9.0808 5.4318 19 1 8.8176 10.1534 5.5089 20 6 9.9767 8.4359 6.0559 21 7 10.0984 7.1287 5.9623 22 14 11.2291 9.4233 7.0286 23 1 12.3362 9.8399 6.1308 24 1 10.5744 10.6280 7.5991 25 1 11.7721 8.5870 8.1291 26 6 6.8165 7.3620 2.2052 27 6 4.5746 4.5875 -0.6192 28 7 3.8683 3.5355 -0.9293 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.6887 1.8464 0.8900 33 1 1.6887 1.8464 -0.8899 34 1 3.8568 0.6438 -0.8908 35 1 3.8575 0.6435 0.8891 36 1 5.4336 2.4366 1.7270 37 1 4.8907 7.7636 0.1479 38 1 4.0823 6.2102 0.4738 39 1 3.0028 8.1555 1.6608 40 1 3.5953 6.8995 2.7747 41 1 4.2180 9.1811 3.5530 42 1 5.0951 9.4517 2.0283 43 1 6.2836 9.5591 4.8070 44 1 7.2688 9.7566 3.3378 45 1 8.0897 7.3937 4.6494 46 1 9.4483 6.6160 5.4569 47 1 7.2096 8.1379 1.5483 48 1 7.6414 6.7864 2.6251 49 1 4.5829 5.5262 -1.1530 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661837638.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:34 Heat of formation + Delta-G solvation = -12.508275 kcal Electronic energy + Delta-G solvation = -29033.355077 eV Core-core repulsion = 24996.766127 eV Total energy + Delta-G solvation = -4036.588950 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.59487 -40.90530 -39.02572 -38.75903 -36.87264 -35.17454 -34.41027 -33.06055 -31.70134 -31.34568 -30.23444 -27.50239 -26.88319 -26.61743 -25.04926 -24.54613 -23.44605 -22.76009 -21.80786 -21.34670 -20.18318 -19.34166 -18.60694 -17.79937 -17.37863 -17.25370 -16.78865 -16.63168 -16.42577 -16.16165 -15.92914 -15.75369 -15.51334 -15.36119 -15.11705 -14.88650 -14.45015 -14.25803 -14.05601 -14.01194 -13.88243 -13.69558 -13.13387 -12.95499 -12.73313 -12.70685 -12.51604 -12.36203 -12.11743 -12.06242 -11.89463 -11.85899 -11.71399 -11.53361 -11.18064 -10.97247 -10.93337 -10.78252 -10.61976 -9.86349 -9.56609 -9.12248 -8.41162 -5.34932 0.50131 1.11339 1.13818 1.56611 1.68931 1.82711 1.85880 2.20678 2.71514 2.72208 3.39447 3.39807 3.60065 3.73016 3.76344 3.82810 3.83838 3.85981 3.94385 4.08691 4.11837 4.16997 4.23878 4.29506 4.40446 4.44391 4.47667 4.57494 4.59040 4.61425 4.66905 4.71598 4.78429 4.82501 4.86138 4.87299 4.96233 5.09068 5.17285 5.27754 5.32571 5.44965 5.52828 5.57633 5.70396 6.01511 6.39619 6.45445 6.45816 7.07571 7.16092 7.97772 8.10434 9.10144 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.017327 B = 0.002197 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1615.602452 B =12740.479065 C =13395.702583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.058 3.942 4 C 0.129 3.871 5 N -0.355 5.355 6 C 0.125 3.875 7 C -0.302 4.302 8 C 0.585 3.415 9 O -0.596 6.596 10 N -0.600 5.600 11 C 0.094 3.906 12 C -0.125 4.125 13 C -0.105 4.105 14 C -0.094 4.094 15 H 0.050 0.950 16 C 0.163 3.837 17 N -0.759 5.759 18 C -0.334 4.334 19 H 0.071 0.929 20 C -0.111 4.111 21 N -0.976 5.976 22 Si 1.134 2.866 23 H -0.284 1.284 24 H -0.269 1.269 25 H -0.294 1.294 26 C 0.130 3.870 27 C 0.090 3.910 28 N -0.307 5.307 29 H 0.103 0.897 30 H 0.050 0.950 31 H 0.051 0.949 32 H 0.056 0.944 33 H 0.062 0.938 34 H 0.105 0.895 35 H 0.128 0.872 36 H 0.199 0.801 37 H 0.094 0.906 38 H 0.109 0.891 39 H 0.110 0.890 40 H 0.054 0.946 41 H 0.074 0.926 42 H 0.080 0.920 43 H 0.025 0.975 44 H 0.026 0.974 45 H 0.357 0.643 46 H 0.240 0.760 47 H 0.072 0.928 48 H 0.048 0.952 49 H 0.219 0.781 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.050 -8.362 -17.064 31.442 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.326 6.326 3 C -0.019 4.019 4 C 0.009 3.991 5 N -0.135 5.135 6 C -0.026 4.026 7 C -0.317 4.317 8 C 0.375 3.625 9 O -0.478 6.478 10 N -0.331 5.331 11 C -0.027 4.027 12 C -0.163 4.163 13 C -0.143 4.143 14 C -0.113 4.113 15 H 0.069 0.931 16 C 0.036 3.964 17 N -0.404 5.404 18 C -0.466 4.466 19 H 0.089 0.911 20 C -0.301 4.301 21 N -0.624 5.624 22 Si 0.958 3.042 23 H -0.211 1.211 24 H -0.194 1.194 25 H -0.220 1.220 26 C 0.007 3.993 27 C -0.097 4.097 28 N -0.127 5.127 29 H 0.121 0.879 30 H 0.068 0.932 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.123 0.877 35 H 0.146 0.854 36 H 0.216 0.784 37 H 0.112 0.888 38 H 0.126 0.874 39 H 0.129 0.871 40 H 0.073 0.927 41 H 0.092 0.908 42 H 0.099 0.901 43 H 0.043 0.957 44 H 0.044 0.956 45 H 0.189 0.811 46 H 0.051 0.949 47 H 0.090 0.910 48 H 0.066 0.934 49 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -24.027 -9.228 -16.787 30.729 hybrid contribution -0.439 0.161 -0.023 0.468 sum -24.466 -9.067 -16.810 31.038 Atomic orbital electron populations 1.22967 0.78642 1.04253 1.00998 1.87757 1.22048 1.27070 1.95691 1.22535 0.92279 0.85287 1.01813 1.21736 0.92793 0.77454 1.07103 1.48412 1.32351 1.12550 1.20164 1.23154 0.91023 0.93471 0.94921 1.20044 1.10563 0.96262 1.04807 1.17869 0.85051 0.81670 0.77920 1.90812 1.25910 1.76542 1.54517 1.48034 1.22503 1.09198 1.53380 1.22372 0.83393 1.00092 0.96887 1.21890 0.98808 0.98194 0.97457 1.21506 0.94059 0.98121 1.00656 1.21547 0.96541 0.97367 0.95889 0.93122 1.20788 0.87749 0.93948 0.93872 1.42697 1.29339 1.05813 1.62556 1.20455 1.06103 0.92799 1.27217 0.91135 1.27375 1.02204 0.97816 1.02749 1.70957 1.39018 1.06707 1.45694 0.82560 0.73506 0.73301 0.74808 1.21111 1.19376 1.22003 1.21355 0.92348 0.92627 0.92974 1.24443 0.92401 0.98589 0.94270 1.77118 1.24975 0.97000 1.13629 0.87904 0.93177 0.93079 0.92533 0.92009 0.87685 0.85377 0.78381 0.88789 0.87359 0.87126 0.92730 0.90754 0.90137 0.95679 0.95563 0.81111 0.94937 0.90995 0.93351 0.76483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -5.38 10.70 -148.98 -1.59 -6.98 16 3 C 0.06 0.69 6.11 71.98 0.44 1.13 16 4 C 0.13 1.50 6.86 86.38 0.59 2.09 16 5 N -0.35 -6.07 3.65 -346.29 -1.26 -7.34 16 6 C 0.13 2.55 11.44 84.28 0.96 3.51 16 7 C -0.30 -7.24 5.33 -20.15 -0.11 -7.34 16 8 C 0.59 19.08 7.59 86.67 0.66 19.74 16 9 O -0.60 -26.25 16.52 -4.04 -0.07 -26.31 16 10 N -0.60 -16.96 2.97 -822.80 -2.45 -19.41 16 11 C 0.09 1.61 5.71 86.36 0.49 2.11 16 12 C -0.13 -2.08 6.08 30.67 0.19 -1.89 16 13 C -0.11 -2.31 5.17 30.62 0.16 -2.15 16 14 C -0.09 -3.09 2.38 -10.72 -0.03 -3.12 16 15 H 0.05 1.88 8.14 -2.38 -0.02 1.86 16 16 C 0.16 6.74 5.65 86.38 0.49 7.23 16 17 N -0.76 -41.09 5.37 -343.43 -1.85 -42.94 16 18 C -0.33 -19.84 9.99 84.03 0.84 -19.00 16 19 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 20 C -0.11 -6.80 5.50 84.86 0.47 -6.34 16 21 N -0.98 -65.32 13.70 21.65 0.30 -65.02 16 22 Si 1.13 54.33 29.92 68.60 2.05 56.38 16 23 H -0.28 -13.00 7.11 99.48 0.71 -12.29 16 24 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 26 C 0.13 4.56 5.50 86.36 0.48 5.04 16 27 C 0.09 1.64 9.57 85.65 0.82 2.46 16 28 N -0.31 -5.83 12.33 -56.27 -0.69 -6.52 16 29 H 0.10 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.33 16 32 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 33 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 34 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 35 H 0.13 1.01 8.06 -2.39 -0.02 0.99 16 36 H 0.20 3.41 8.06 -2.91 -0.02 3.38 16 37 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.11 1.52 4.14 -2.39 -0.01 1.51 16 39 H 0.11 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 41 H 0.07 1.55 8.14 -2.38 -0.02 1.53 16 42 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 43 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 44 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.36 20.70 5.72 -92.71 -0.53 20.17 16 46 H 0.24 16.38 6.77 -92.71 -0.63 15.76 16 47 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 48 H 0.05 2.21 6.23 -2.39 -0.01 2.19 16 49 H 0.22 2.54 7.11 -2.91 -0.02 2.52 16 Total: -1.00 -85.63 396.44 2.70 -82.93 By element: Atomic # 1 Polarization: 29.71 SS G_CDS: 0.56 Total: 30.27 kcal Atomic # 6 Polarization: -2.76 SS G_CDS: 7.70 Total: 4.94 kcal Atomic # 7 Polarization: -135.28 SS G_CDS: -5.95 Total: -141.23 kcal Atomic # 8 Polarization: -31.63 SS G_CDS: -1.66 Total: -33.29 kcal Atomic # 14 Polarization: 54.33 SS G_CDS: 2.05 Total: 56.38 kcal Total: -85.63 2.70 -82.93 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661837638.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.420 kcal (2) G-P(sol) polarization free energy of solvation -85.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.697 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds