Wall clock time and date at job start Tue Mar 31 2020 19:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99936 * 2 1 4 4 C 1.53001 * 109.47392 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46995 * 179.97438 * 4 3 2 6 6 C 1.34261 * 125.74937 * 125.00166 * 5 4 3 7 7 C 1.38041 * 107.41137 * 180.02562 * 6 5 4 8 8 C 1.47436 * 126.41286 * 179.73924 * 7 6 5 9 9 O 1.21608 * 119.99600 * 317.30094 * 8 7 6 10 10 N 1.34770 * 120.00164 * 137.29528 * 8 7 6 11 11 C 1.46928 * 120.62981 * 3.43407 * 10 8 7 12 12 C 1.52767 * 109.00385 * 233.57811 * 11 10 8 13 13 C 1.53036 * 109.38833 * 305.58736 * 12 11 10 14 14 C 1.53042 * 109.53484 * 61.24061 * 13 12 11 15 15 H 1.08989 * 109.50152 * 58.59101 * 14 13 12 16 16 C 1.53001 * 109.52169 * 178.66960 * 14 13 12 17 17 N 1.46498 * 109.47163 * 184.85350 * 16 14 13 18 18 C 1.36937 * 120.00159 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00153 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00051 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99730 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99924 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46944 * 89.99988 * 22 20 18 24 24 H 1.48507 * 109.46729 * 209.99958 * 22 20 18 25 25 H 1.48493 * 109.47077 * 329.99655 * 22 20 18 26 26 C 1.46928 * 120.63122 * 183.70609 * 10 8 7 27 27 C 1.41290 * 107.17594 * 359.97438 * 7 6 5 28 28 N 1.30446 * 108.02052 * 359.97438 * 27 7 6 29 29 H 1.08995 * 109.47276 * 60.00021 * 1 2 3 30 30 H 1.09004 * 109.46687 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47156 * 299.99447 * 1 2 3 32 32 H 1.09004 * 109.46583 * 60.00106 * 3 2 1 33 33 H 1.09000 * 109.46787 * 300.00507 * 3 2 1 34 34 H 1.09002 * 109.46868 * 60.00022 * 4 3 2 35 35 H 1.08993 * 109.46824 * 300.00364 * 4 3 2 36 36 H 1.08001 * 126.29274 * 359.97438 * 6 5 4 37 37 H 1.08995 * 109.58847 * 353.41374 * 11 10 8 38 38 H 1.08996 * 109.58766 * 113.84495 * 11 10 8 39 39 H 1.09006 * 109.55877 * 185.54934 * 12 11 10 40 40 H 1.08999 * 109.35838 * 65.50268 * 12 11 10 41 41 H 1.09000 * 109.46048 * 301.22370 * 13 12 11 42 42 H 1.08996 * 109.44859 * 181.25397 * 13 12 11 43 43 H 1.08995 * 109.47111 * 304.85451 * 16 14 13 44 44 H 1.09007 * 109.47557 * 64.85445 * 16 14 13 45 45 H 0.97005 * 119.99957 * 359.97438 * 17 16 14 46 46 H 0.97011 * 119.99533 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.58906 * 246.15815 * 26 10 8 48 48 H 1.09000 * 109.58571 * 6.44388 * 26 10 8 49 49 H 1.07994 * 125.98945 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 4.1312 2.5232 0.0000 6 6 5.0209 2.9862 0.8926 7 6 5.3258 4.2845 0.5365 8 6 6.2569 5.1883 1.2365 9 8 6.2522 5.2441 2.4513 10 7 7.1132 5.9526 0.5301 11 6 7.0799 5.9523 -0.9388 12 6 8.4792 5.6435 -1.4680 13 6 9.4807 6.6293 -0.8619 14 6 9.4933 6.4748 0.6606 15 1 9.7595 5.4502 0.9202 16 6 10.5184 7.4371 1.2638 17 7 10.6133 7.2077 2.7075 18 6 11.4729 7.9577 3.4650 19 1 12.0807 8.7186 2.9982 20 6 11.5631 7.7399 4.8330 21 7 12.3897 8.4604 5.5610 22 14 10.5113 6.4242 5.6407 23 1 11.2450 5.1332 5.6379 24 1 10.2115 6.8203 7.0402 25 1 9.2413 6.2735 4.8861 26 6 8.1017 6.7974 1.2142 27 6 4.5745 4.5871 -0.6212 28 7 3.8697 3.5342 -0.9314 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6885 1.8464 0.8901 33 1 1.6885 1.8464 -0.8900 34 1 3.8574 0.6437 -0.8891 35 1 3.8567 0.6440 0.8908 36 1 5.4232 2.4430 1.7349 37 1 6.3823 5.1913 -1.2883 38 1 6.7647 6.9322 -1.2973 39 1 8.4877 5.7377 -2.5540 40 1 8.7550 4.6267 -1.1885 41 1 9.1903 7.6474 -1.1212 42 1 10.4759 6.4239 -1.2560 43 1 11.4918 7.2660 0.8040 44 1 10.2049 8.4647 1.0790 45 1 10.0665 6.5250 3.1271 46 1 12.4530 8.3079 6.5169 47 1 7.8715 7.8476 1.0348 48 1 8.0763 6.5955 2.2850 49 1 4.5825 5.5255 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001661837639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:40 Heat of formation + Delta-G solvation = 17.789510 kcal Electronic energy + Delta-G solvation = -29029.825407 eV Core-core repulsion = 24994.550268 eV Total energy + Delta-G solvation = -4035.275139 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.80591 -39.82193 -38.52843 -37.51504 -35.12977 -34.35135 -32.84810 -31.75333 -30.82928 -30.37595 -29.51065 -26.96405 -25.79932 -25.60368 -24.03498 -22.88630 -22.49755 -21.25186 -21.05022 -20.21598 -19.19598 -17.92248 -17.45794 -16.93560 -16.85758 -16.29255 -15.95502 -15.78494 -15.20574 -14.92185 -14.69007 -14.57525 -14.48771 -14.06678 -13.88719 -13.84635 -13.39356 -13.15663 -12.97316 -12.76196 -12.61683 -12.52246 -12.40552 -12.23983 -11.93746 -11.56711 -11.36555 -11.29748 -11.11082 -10.86627 -10.66278 -10.42740 -10.33389 -10.23062 -10.02451 -9.91855 -9.76285 -9.50250 -8.96877 -8.83337 -8.50608 -7.16180 -5.70270 -3.05547 1.28780 1.78594 1.96554 2.91370 3.17957 3.24681 3.47132 3.54302 3.56383 4.02151 4.29072 4.40793 4.45468 4.62903 4.67955 4.69036 4.72253 4.76387 4.77979 4.88481 4.92993 4.97691 5.06411 5.11589 5.14451 5.22224 5.28522 5.34010 5.46188 5.59464 5.61349 5.69765 5.80595 5.88379 5.95440 6.04317 6.07158 6.08577 6.34522 6.35491 6.40627 6.48232 6.60218 6.71520 6.80928 7.16942 7.48647 8.05603 8.28106 8.48707 9.28123 10.01006 10.20389 11.47915 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.002431 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.015856 B =11515.786866 C =12919.502809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.391 6.391 3 C 0.051 3.949 4 C 0.135 3.865 5 N -0.362 5.362 6 C 0.121 3.879 7 C -0.279 4.279 8 C 0.590 3.410 9 O -0.538 6.538 10 N -0.604 5.604 11 C 0.099 3.901 12 C -0.133 4.133 13 C -0.112 4.112 14 C -0.111 4.111 15 H 0.073 0.927 16 C 0.165 3.835 17 N -0.757 5.757 18 C -0.244 4.244 19 H 0.090 0.910 20 C 0.005 3.995 21 N -0.935 5.935 22 Si 0.879 3.121 23 H -0.285 1.285 24 H -0.291 1.291 25 H -0.271 1.271 26 C 0.120 3.880 27 C 0.081 3.919 28 N -0.296 5.296 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.044 0.956 32 H 0.057 0.943 33 H 0.067 0.933 34 H 0.099 0.901 35 H 0.109 0.891 36 H 0.187 0.813 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.065 0.935 41 H 0.066 0.934 42 H 0.067 0.933 43 H 0.030 0.970 44 H 0.028 0.972 45 H 0.362 0.638 46 H 0.259 0.741 47 H 0.070 0.930 48 H 0.097 0.903 49 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.412 -15.169 -19.182 33.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.309 6.309 3 C -0.027 4.027 4 C 0.014 3.986 5 N -0.143 5.143 6 C -0.029 4.029 7 C -0.294 4.294 8 C 0.378 3.622 9 O -0.415 6.415 10 N -0.337 5.337 11 C -0.025 4.025 12 C -0.171 4.171 13 C -0.150 4.150 14 C -0.131 4.131 15 H 0.091 0.909 16 C 0.037 3.963 17 N -0.403 5.403 18 C -0.373 4.373 19 H 0.108 0.892 20 C -0.191 4.191 21 N -0.583 5.583 22 Si 0.709 3.291 23 H -0.212 1.212 24 H -0.217 1.217 25 H -0.197 1.197 26 C -0.002 4.002 27 C -0.107 4.107 28 N -0.116 5.116 29 H 0.063 0.937 30 H 0.109 0.891 31 H 0.063 0.937 32 H 0.075 0.925 33 H 0.085 0.915 34 H 0.117 0.883 35 H 0.127 0.873 36 H 0.204 0.796 37 H 0.108 0.892 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.086 0.914 43 H 0.048 0.952 44 H 0.046 0.954 45 H 0.195 0.805 46 H 0.069 0.931 47 H 0.088 0.912 48 H 0.115 0.885 49 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -23.068 -15.783 -19.281 33.956 hybrid contribution -0.251 -0.304 1.244 1.305 sum -23.319 -16.088 -18.037 33.584 Atomic orbital electron populations 1.22789 0.79835 1.03188 1.00436 1.87780 1.20673 1.26832 1.95618 1.22654 0.92439 0.85431 1.02164 1.21484 0.92765 0.78623 1.05756 1.48249 1.33153 1.12007 1.20910 1.22914 0.91214 0.94490 0.94240 1.20265 1.09929 0.96457 1.02746 1.17324 0.79520 0.79106 0.86268 1.90834 1.70033 1.67160 1.13440 1.47986 1.34691 1.44344 1.06674 1.21932 0.98373 1.02246 0.79900 1.21832 0.94891 1.00327 1.00095 1.21509 0.99295 0.99337 0.94837 1.21743 0.95110 1.01259 0.94944 0.90886 1.20616 0.95105 0.95624 0.84938 1.42769 1.50074 1.44354 1.03059 1.19044 1.14938 1.13511 0.89854 0.89234 1.24658 0.99128 0.99149 0.96133 1.69710 1.40001 1.42611 1.05965 0.86609 0.81013 0.82277 0.79167 1.21187 1.21736 1.19692 1.21739 0.86126 0.93540 0.98797 1.24119 0.93927 0.97927 0.94697 1.77138 1.24074 0.96833 1.13584 0.93678 0.89099 0.93733 0.92507 0.91450 0.88297 0.87265 0.79603 0.89224 0.91270 0.90841 0.91658 0.91543 0.91389 0.95176 0.95378 0.80507 0.93135 0.91190 0.88452 0.79011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -2.80 10.70 -35.23 -0.38 -3.17 16 3 C 0.05 0.33 6.11 37.16 0.23 0.56 16 4 C 0.14 0.83 6.86 -4.04 -0.03 0.80 16 5 N -0.36 -3.19 3.65 -60.81 -0.22 -3.41 16 6 C 0.12 1.19 11.44 -16.56 -0.19 1.00 16 7 C -0.28 -3.24 5.33 -105.06 -0.56 -3.80 16 8 C 0.59 8.86 7.59 -12.52 -0.09 8.76 16 9 O -0.54 -10.52 16.52 5.27 0.09 -10.43 16 10 N -0.60 -8.10 2.98 -174.29 -0.52 -8.62 16 11 C 0.10 0.92 5.67 -3.93 -0.02 0.90 16 12 C -0.13 -1.24 6.06 -26.83 -0.16 -1.40 16 13 C -0.11 -1.27 5.17 -26.69 -0.14 -1.40 16 14 C -0.11 -1.69 2.37 -90.50 -0.21 -1.91 16 15 H 0.07 1.20 8.14 -51.93 -0.42 0.77 16 16 C 0.16 3.16 5.66 -4.04 -0.02 3.14 16 17 N -0.76 -18.46 5.18 -59.91 -0.31 -18.77 16 18 C -0.24 -7.07 10.47 -15.06 -0.16 -7.23 16 19 H 0.09 2.75 8.06 -52.49 -0.42 2.33 16 20 C 0.01 0.15 5.50 -17.43 -0.10 0.06 16 21 N -0.93 -30.08 13.97 55.49 0.78 -29.31 16 22 Si 0.88 23.27 27.74 -169.99 -4.71 18.56 16 23 H -0.29 -7.47 7.11 56.52 0.40 -7.06 16 24 H -0.29 -7.77 7.11 56.52 0.40 -7.37 16 25 H -0.27 -6.99 6.52 56.52 0.37 -6.62 16 26 C 0.12 1.90 5.51 -3.71 -0.02 1.88 16 27 C 0.08 0.77 9.58 -16.98 -0.16 0.61 16 28 N -0.30 -2.96 12.33 30.86 0.38 -2.58 16 29 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.04 0.19 8.14 -51.93 -0.42 -0.24 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.10 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.11 0.48 8.06 -51.93 -0.42 0.06 16 36 H 0.19 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.09 0.73 4.16 -51.93 -0.22 0.51 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 43 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.36 8.86 4.76 -40.82 -0.19 8.67 16 46 H 0.26 7.94 8.31 -40.81 -0.34 7.60 16 47 H 0.07 1.07 8.14 -51.93 -0.42 0.64 16 48 H 0.10 1.92 6.23 -51.93 -0.32 1.60 16 49 H 0.19 1.33 7.10 -52.49 -0.37 0.95 16 LS Contribution 395.00 15.07 5.95 5.95 Total: -1.00 -37.12 395.00 -7.36 -44.48 By element: Atomic # 1 Polarization: 11.93 SS G_CDS: -7.88 Total: 4.05 kcal Atomic # 6 Polarization: 3.78 SS G_CDS: -0.53 Total: 3.25 kcal Atomic # 7 Polarization: -62.80 SS G_CDS: 0.10 Total: -62.69 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.29 Total: -13.60 kcal Atomic # 14 Polarization: 23.27 SS G_CDS: -4.71 Total: 18.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -37.12 -7.36 -44.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661837639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.267 kcal (2) G-P(sol) polarization free energy of solvation -37.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.358 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds