Wall clock time and date at job start Tue Mar 31 2020 19:14:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42907 * 113.99936 * 2 1 4 4 C 1.53001 * 109.47392 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.46995 * 179.97438 * 4 3 2 6 6 C 1.34261 * 125.74937 * 125.00166 * 5 4 3 7 7 C 1.38041 * 107.41137 * 180.02562 * 6 5 4 8 8 C 1.47436 * 126.41286 * 179.73924 * 7 6 5 9 9 O 1.21608 * 119.99600 * 317.30094 * 8 7 6 10 10 N 1.34770 * 120.00164 * 137.29528 * 8 7 6 11 11 C 1.46928 * 120.62981 * 3.43407 * 10 8 7 12 12 C 1.52767 * 109.00385 * 233.57811 * 11 10 8 13 13 C 1.53036 * 109.38833 * 305.58736 * 12 11 10 14 14 C 1.53042 * 109.53484 * 61.24061 * 13 12 11 15 15 H 1.08989 * 109.50152 * 58.59101 * 14 13 12 16 16 C 1.53001 * 109.52169 * 178.66960 * 14 13 12 17 17 N 1.46498 * 109.47163 * 184.85350 * 16 14 13 18 18 C 1.36937 * 120.00159 * 180.02562 * 17 16 14 19 19 H 1.08000 * 120.00153 * 0.02562 * 18 17 16 20 20 C 1.38815 * 120.00051 * 180.02562 * 18 17 16 21 21 N 1.31619 * 119.99730 * 179.97438 * 20 18 17 22 22 Si 1.86803 * 119.99924 * 359.97438 * 20 18 17 23 23 H 1.48496 * 109.46944 * 89.99988 * 22 20 18 24 24 H 1.48507 * 109.46729 * 209.99958 * 22 20 18 25 25 H 1.48493 * 109.47077 * 329.99655 * 22 20 18 26 26 C 1.46928 * 120.63122 * 183.70609 * 10 8 7 27 27 C 1.41290 * 107.17594 * 359.97438 * 7 6 5 28 28 N 1.30446 * 108.02052 * 359.97438 * 27 7 6 29 29 H 1.08995 * 109.47276 * 60.00021 * 1 2 3 30 30 H 1.09004 * 109.46687 * 179.97438 * 1 2 3 31 31 H 1.08995 * 109.47156 * 299.99447 * 1 2 3 32 32 H 1.09004 * 109.46583 * 60.00106 * 3 2 1 33 33 H 1.09000 * 109.46787 * 300.00507 * 3 2 1 34 34 H 1.09002 * 109.46868 * 60.00022 * 4 3 2 35 35 H 1.08993 * 109.46824 * 300.00364 * 4 3 2 36 36 H 1.08001 * 126.29274 * 359.97438 * 6 5 4 37 37 H 1.08995 * 109.58847 * 353.41374 * 11 10 8 38 38 H 1.08996 * 109.58766 * 113.84495 * 11 10 8 39 39 H 1.09006 * 109.55877 * 185.54934 * 12 11 10 40 40 H 1.08999 * 109.35838 * 65.50268 * 12 11 10 41 41 H 1.09000 * 109.46048 * 301.22370 * 13 12 11 42 42 H 1.08996 * 109.44859 * 181.25397 * 13 12 11 43 43 H 1.08995 * 109.47111 * 304.85451 * 16 14 13 44 44 H 1.09007 * 109.47557 * 64.85445 * 16 14 13 45 45 H 0.97005 * 119.99957 * 359.97438 * 17 16 14 46 46 H 0.97011 * 119.99533 * 180.02562 * 21 20 18 47 47 H 1.09002 * 109.58906 * 246.15815 * 26 10 8 48 48 H 1.09000 * 109.58571 * 6.44388 * 26 10 8 49 49 H 1.07994 * 125.98945 * 179.97438 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 0.0006 5 7 4.1312 2.5232 0.0000 6 6 5.0209 2.9862 0.8926 7 6 5.3258 4.2845 0.5365 8 6 6.2569 5.1883 1.2365 9 8 6.2522 5.2441 2.4513 10 7 7.1132 5.9526 0.5301 11 6 7.0799 5.9523 -0.9388 12 6 8.4792 5.6435 -1.4680 13 6 9.4807 6.6293 -0.8619 14 6 9.4933 6.4748 0.6606 15 1 9.7595 5.4502 0.9202 16 6 10.5184 7.4371 1.2638 17 7 10.6133 7.2077 2.7075 18 6 11.4729 7.9577 3.4650 19 1 12.0807 8.7186 2.9982 20 6 11.5631 7.7399 4.8330 21 7 12.3897 8.4604 5.5610 22 14 10.5113 6.4242 5.6407 23 1 11.2450 5.1332 5.6379 24 1 10.2115 6.8203 7.0402 25 1 9.2413 6.2735 4.8861 26 6 8.1017 6.7974 1.2142 27 6 4.5745 4.5871 -0.6212 28 7 3.8697 3.5342 -0.9314 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5137 0.8900 32 1 1.6885 1.8464 0.8901 33 1 1.6885 1.8464 -0.8900 34 1 3.8574 0.6437 -0.8891 35 1 3.8567 0.6440 0.8908 36 1 5.4232 2.4430 1.7349 37 1 6.3823 5.1913 -1.2883 38 1 6.7647 6.9322 -1.2973 39 1 8.4877 5.7377 -2.5540 40 1 8.7550 4.6267 -1.1885 41 1 9.1903 7.6474 -1.1212 42 1 10.4759 6.4239 -1.2560 43 1 11.4918 7.2660 0.8040 44 1 10.2049 8.4647 1.0790 45 1 10.0665 6.5250 3.1271 46 1 12.4530 8.3079 6.5169 47 1 7.8715 7.8476 1.0348 48 1 8.0763 6.5955 2.2850 49 1 4.5825 5.5255 -1.1556 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001661837639.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:14:39 Heat of formation + Delta-G solvation = -9.013423 kcal Electronic energy + Delta-G solvation = -29030.987670 eV Core-core repulsion = 24994.550268 eV Total energy + Delta-G solvation = -4036.437402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.57238 -40.87512 -39.02807 -38.72493 -36.74670 -35.11754 -34.31768 -33.22514 -31.96749 -31.49580 -30.31725 -27.65698 -27.13665 -26.57708 -24.76562 -24.37844 -23.41264 -22.58364 -21.79002 -21.40001 -20.13532 -19.65351 -18.57449 -17.68312 -17.44951 -17.19285 -16.67802 -16.62991 -16.53584 -16.18299 -15.83453 -15.65210 -15.56452 -15.17989 -14.94526 -14.88044 -14.46200 -14.27966 -14.19697 -14.00156 -13.83634 -13.66536 -13.33266 -13.10440 -12.97527 -12.76523 -12.61823 -12.37223 -12.23646 -12.05794 -11.99214 -11.88962 -11.78286 -11.52229 -11.36237 -11.01964 -10.91061 -10.80365 -10.60329 -9.83753 -9.53274 -9.29811 -8.05283 -5.36827 0.51731 1.13219 1.17178 1.33996 1.37578 1.44766 1.89028 2.24427 2.44612 2.70895 3.26688 3.41741 3.55490 3.73560 3.77531 3.83290 3.87857 3.90445 3.96039 4.13364 4.15218 4.17385 4.25371 4.34464 4.43329 4.45650 4.47114 4.60233 4.61424 4.63777 4.67889 4.79299 4.81209 4.83615 4.91458 4.94302 5.05589 5.14809 5.23321 5.33273 5.36287 5.51775 5.57329 5.72290 5.74723 6.00056 6.19733 6.42380 6.48018 7.05907 7.18261 7.83774 8.00295 9.16154 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.015709 B = 0.002431 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.015856 B =11515.786866 C =12919.502809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.405 6.405 3 C 0.056 3.944 4 C 0.131 3.869 5 N -0.356 5.356 6 C 0.126 3.874 7 C -0.302 4.302 8 C 0.587 3.413 9 O -0.596 6.596 10 N -0.600 5.600 11 C 0.094 3.906 12 C -0.126 4.126 13 C -0.106 4.106 14 C -0.098 4.098 15 H 0.059 0.941 16 C 0.160 3.840 17 N -0.761 5.761 18 C -0.229 4.229 19 H 0.064 0.936 20 C -0.058 4.058 21 N -0.980 5.980 22 Si 0.945 3.055 23 H -0.277 1.277 24 H -0.293 1.293 25 H -0.266 1.266 26 C 0.123 3.877 27 C 0.090 3.910 28 N -0.309 5.309 29 H 0.050 0.950 30 H 0.104 0.896 31 H 0.048 0.952 32 H 0.052 0.948 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.201 0.799 37 H 0.107 0.893 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.056 0.944 41 H 0.079 0.921 42 H 0.075 0.925 43 H 0.033 0.967 44 H 0.032 0.968 45 H 0.362 0.638 46 H 0.258 0.742 47 H 0.076 0.924 48 H 0.053 0.947 49 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.231 -16.760 -21.974 36.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.324 6.324 3 C -0.021 4.021 4 C 0.011 3.989 5 N -0.136 5.136 6 C -0.025 4.025 7 C -0.317 4.317 8 C 0.377 3.623 9 O -0.478 6.478 10 N -0.331 5.331 11 C -0.027 4.027 12 C -0.164 4.164 13 C -0.144 4.144 14 C -0.117 4.117 15 H 0.078 0.922 16 C 0.034 3.966 17 N -0.407 5.407 18 C -0.361 4.361 19 H 0.082 0.918 20 C -0.250 4.250 21 N -0.631 5.631 22 Si 0.773 3.227 23 H -0.203 1.203 24 H -0.220 1.220 25 H -0.191 1.191 26 C 0.000 4.000 27 C -0.097 4.097 28 N -0.129 5.129 29 H 0.069 0.931 30 H 0.122 0.878 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.127 0.873 35 H 0.147 0.853 36 H 0.218 0.782 37 H 0.125 0.875 38 H 0.111 0.889 39 H 0.126 0.874 40 H 0.075 0.925 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.051 0.949 44 H 0.050 0.950 45 H 0.195 0.805 46 H 0.067 0.933 47 H 0.094 0.906 48 H 0.072 0.928 49 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -24.918 -17.400 -22.181 37.625 hybrid contribution 0.299 0.208 2.010 2.043 sum -24.618 -17.192 -20.171 36.173 Atomic orbital electron populations 1.22966 0.78718 1.04283 1.00916 1.87755 1.21975 1.26984 1.95675 1.22558 0.92686 0.85281 1.01599 1.21723 0.92441 0.77519 1.07256 1.48420 1.32479 1.12523 1.20157 1.23169 0.90788 0.94243 0.94343 1.20061 1.10814 0.96768 1.04060 1.17818 0.79720 0.79093 0.85717 1.90796 1.71924 1.69026 1.16033 1.48048 1.33397 1.43254 1.08407 1.22270 0.99178 1.04272 0.77017 1.21819 0.93697 0.98995 1.01924 1.21505 1.00717 1.00943 0.91281 1.21598 0.93246 0.99079 0.97799 0.92204 1.20849 0.96630 0.97004 0.82147 1.42860 1.49095 1.43668 1.05078 1.19085 1.14252 1.12497 0.90217 0.91794 1.25368 1.00943 1.01760 0.96953 1.69858 1.42214 1.44811 1.06171 0.85559 0.79526 0.79803 0.77805 1.20334 1.21976 1.19109 1.21484 0.87405 0.94337 0.96753 1.24448 0.92802 0.98669 0.93817 1.77130 1.24395 0.97199 1.14181 0.93113 0.87781 0.93353 0.92989 0.92093 0.87310 0.85332 0.78242 0.87521 0.88875 0.87396 0.92544 0.90209 0.90639 0.94859 0.94980 0.80542 0.93335 0.90603 0.92803 0.76560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 113.37 1.25 1.46 16 2 O -0.41 -5.16 10.70 -148.98 -1.59 -6.75 16 3 C 0.06 0.66 6.11 71.98 0.44 1.10 16 4 C 0.13 1.33 6.86 86.38 0.59 1.92 16 5 N -0.36 -5.51 3.65 -346.31 -1.26 -6.77 16 6 C 0.13 2.28 11.44 84.27 0.96 3.24 16 7 C -0.30 -6.56 5.33 -20.15 -0.11 -6.66 16 8 C 0.59 17.38 7.59 86.67 0.66 18.03 16 9 O -0.60 -23.98 16.52 -4.06 -0.07 -24.05 16 10 N -0.60 -15.27 2.98 -823.58 -2.45 -17.73 16 11 C 0.09 1.43 5.67 86.22 0.49 1.92 16 12 C -0.13 -1.85 6.06 30.53 0.19 -1.67 16 13 C -0.11 -2.09 5.17 30.62 0.16 -1.93 16 14 C -0.10 -2.87 2.37 -10.71 -0.03 -2.89 16 15 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 16 C 0.16 6.06 5.66 86.38 0.49 6.55 16 17 N -0.76 -37.49 5.18 -343.45 -1.78 -39.27 16 18 C -0.23 -13.59 10.47 84.03 0.88 -12.71 16 19 H 0.06 4.06 8.06 -2.91 -0.02 4.03 16 20 C -0.06 -3.61 5.50 84.86 0.47 -3.14 16 21 N -0.98 -64.65 13.97 21.65 0.30 -64.35 16 22 Si 0.94 49.34 27.74 68.60 1.90 51.24 16 23 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 24 H -0.29 -15.32 7.11 99.48 0.71 -14.61 16 25 H -0.27 -13.50 6.52 99.48 0.65 -12.85 16 26 C 0.12 3.87 5.51 86.36 0.48 4.35 16 27 C 0.09 1.49 9.58 85.65 0.82 2.31 16 28 N -0.31 -5.43 12.33 -56.28 -0.69 -6.13 16 29 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 30 H 0.10 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.05 0.34 8.14 -2.39 -0.02 0.32 16 32 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.11 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.13 0.81 8.06 -2.39 -0.02 0.79 16 36 H 0.20 2.91 8.06 -2.91 -0.02 2.88 16 37 H 0.11 1.32 4.16 -2.39 -0.01 1.31 16 38 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.11 0.96 8.14 -2.38 -0.02 0.94 16 40 H 0.06 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.08 1.39 8.14 -2.39 -0.02 1.38 16 42 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 44 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 45 H 0.36 17.87 4.76 -92.70 -0.44 17.42 16 46 H 0.26 16.23 8.31 -92.70 -0.77 15.46 16 47 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 48 H 0.05 2.19 6.23 -2.39 -0.01 2.17 16 49 H 0.22 2.22 7.10 -2.91 -0.02 2.20 16 Total: -1.00 -83.25 395.00 2.53 -80.72 By element: Atomic # 1 Polarization: 20.75 SS G_CDS: 0.45 Total: 21.20 kcal Atomic # 6 Polarization: 4.14 SS G_CDS: 7.73 Total: 11.88 kcal Atomic # 7 Polarization: -128.35 SS G_CDS: -5.89 Total: -134.23 kcal Atomic # 8 Polarization: -29.13 SS G_CDS: -1.66 Total: -30.80 kcal Atomic # 14 Polarization: 49.34 SS G_CDS: 1.90 Total: 51.24 kcal Total: -83.25 2.53 -80.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001661837639.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.704 kcal (2) G-P(sol) polarization free energy of solvation -83.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.548 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds