Wall clock time and date at job start Tue Mar 31 2020 19:15:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00121 * 2 1 4 4 C 1.52996 * 109.47284 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47031 * 180.02562 * 4 3 2 6 6 C 1.35041 * 124.88732 * 124.97121 * 5 4 3 7 7 C 1.35359 * 107.22843 * 179.76176 * 6 5 4 8 8 C 1.41504 * 105.50647 * 0.35967 * 7 6 5 9 9 C 1.47712 * 126.51958 * 179.90145 * 8 7 6 10 10 O 1.21567 * 120.00197 * 359.70751 * 9 8 7 11 11 N 1.34774 * 119.99774 * 179.71619 * 9 8 7 12 12 C 1.46504 * 119.99844 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47225 * 175.53634 * 12 11 9 14 14 N 1.46506 * 110.53641 * 57.61931 * 13 12 11 15 15 C 1.36933 * 120.00401 * 58.62243 * 14 13 12 16 16 H 1.08006 * 119.99300 * 6.53639 * 15 14 13 17 17 C 1.38804 * 120.00073 * 186.53661 * 15 14 13 18 18 N 1.31618 * 120.00404 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99803 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47086 * 60.00336 * 19 17 15 21 21 H 1.48503 * 109.46908 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47168 * 299.99926 * 19 17 15 23 23 C 1.54889 * 110.48686 * 180.22825 * 13 12 11 24 24 C 1.54895 * 102.74848 * 156.62225 * 23 13 12 25 25 C 1.54272 * 104.19256 * 322.05887 * 24 23 13 26 26 C 1.53871 * 106.60145 * 23.60982 * 25 24 23 27 27 N 1.28475 * 124.88780 * 304.97421 * 5 4 3 28 28 H 1.08999 * 109.47098 * 299.99626 * 1 2 3 29 29 H 1.08999 * 109.47169 * 60.00447 * 1 2 3 30 30 H 1.09002 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46745 * 59.99647 * 3 2 1 32 32 H 1.09002 * 109.47047 * 300.00553 * 3 2 1 33 33 H 1.08998 * 109.47243 * 60.00038 * 4 3 2 34 34 H 1.09002 * 109.46854 * 299.99532 * 4 3 2 35 35 H 1.07999 * 126.38311 * 0.03783 * 6 5 4 36 36 H 1.08009 * 127.24969 * 180.24462 * 7 6 5 37 37 H 0.97003 * 120.00165 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.46833 * 55.53835 * 12 11 9 39 39 H 1.09005 * 109.47165 * 295.53940 * 12 11 9 40 40 H 0.96999 * 119.99526 * 238.62385 * 14 13 12 41 41 H 0.97001 * 120.00469 * 179.97438 * 18 17 15 42 42 H 1.08995 * 110.75801 * 274.93614 * 23 13 12 43 43 H 1.09001 * 110.75426 * 38.30728 * 23 13 12 44 44 H 1.08994 * 110.48349 * 203.38368 * 24 23 13 45 45 H 1.08997 * 110.48700 * 80.73417 * 24 23 13 46 46 H 1.09001 * 110.03304 * 264.32241 * 25 24 23 47 47 H 1.09006 * 110.03030 * 142.89386 * 25 24 23 48 48 H 1.08998 * 110.03485 * 240.71240 * 26 25 24 49 49 H 1.08996 * 110.03357 * 119.27899 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5230 0.0000 6 6 5.0257 2.9698 0.9076 7 6 5.3392 4.2423 0.5688 8 6 4.5727 4.5259 -0.5864 9 6 4.5588 5.7948 -1.3424 10 8 5.2512 6.7260 -0.9799 11 7 3.7782 5.9204 -2.4339 12 6 3.7639 7.1791 -3.1833 13 6 2.8893 7.0213 -4.4287 14 7 1.5303 6.6215 -4.0550 15 6 0.7889 7.4135 -3.2195 16 1 1.1629 8.3817 -2.9205 17 6 -0.4431 6.9722 -2.7570 18 7 -0.8991 5.7926 -3.1218 19 14 -1.4542 8.0524 -1.6166 20 1 -1.7650 9.3355 -2.2966 21 1 -2.7199 7.3574 -1.2696 22 1 -0.6819 8.3233 -0.3775 23 6 2.8623 8.3388 -5.2427 24 6 2.4969 7.8530 -6.6674 25 6 3.2589 6.5202 -6.8195 26 6 3.5083 5.9914 -5.3962 27 7 3.8779 3.4406 -0.8629 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6437 0.8892 35 1 5.4210 2.4139 1.7449 36 1 6.0279 4.9028 1.0747 37 1 3.2259 5.1773 -2.7232 38 1 4.7802 7.4350 -3.4831 39 1 3.3602 7.9722 -2.5539 40 1 1.1557 5.7958 -4.3995 41 1 -1.7599 5.4840 -2.7982 42 1 2.0992 9.0152 -4.8577 43 1 3.8420 8.8166 -5.2369 44 1 2.8337 8.5723 -7.4137 45 1 1.4225 7.6898 -6.7509 46 1 4.2087 6.6889 -7.3270 47 1 2.6558 5.8075 -7.3822 48 1 4.5792 5.9035 -5.2129 49 1 3.0264 5.0222 -5.2681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001666775210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:36 Heat of formation + Delta-G solvation = 5.160929 kcal Electronic energy + Delta-G solvation = -29953.581859 eV Core-core repulsion = 25917.759103 eV Total energy + Delta-G solvation = -4035.822756 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.57357 -39.15134 -38.17629 -37.88293 -34.00704 -33.97008 -33.20589 -30.85617 -30.40527 -29.56582 -28.18740 -27.89400 -26.52539 -24.93403 -23.77385 -23.19281 -21.88860 -21.31223 -20.10316 -19.34082 -18.65880 -17.77734 -17.00247 -16.84104 -16.38126 -16.11829 -15.69854 -15.61751 -15.00246 -14.87966 -14.56030 -14.29632 -14.12225 -13.85817 -13.59530 -13.31631 -13.26966 -13.05699 -12.65746 -12.52833 -12.20940 -11.84136 -11.75793 -11.53109 -11.32252 -11.05790 -10.79523 -10.75254 -10.68723 -10.60198 -10.48674 -10.26423 -9.95826 -9.92718 -9.80108 -9.63573 -9.61511 -9.19302 -9.00274 -8.86850 -8.30880 -6.97698 -5.77783 -3.06340 1.78670 2.22518 2.29965 3.43564 3.47319 3.49904 3.57432 3.77463 3.90640 4.32138 4.58571 4.63888 4.79180 4.85140 4.95736 5.17313 5.17959 5.19295 5.24858 5.28592 5.40069 5.43168 5.52393 5.59286 5.60273 5.71961 5.75164 5.83718 5.87378 5.98932 6.03819 6.19639 6.27796 6.32212 6.41444 6.47394 6.53605 6.60819 6.70481 6.72544 6.84561 6.84690 6.86110 7.04983 7.15551 7.72960 7.91029 8.26269 8.40724 8.77991 9.52655 10.07193 10.43105 11.44049 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.004095 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.019312 B = 6836.123817 C = 8215.136375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.393 6.393 3 C 0.047 3.953 4 C 0.128 3.872 5 N -0.285 5.285 6 C -0.021 4.021 7 C -0.181 4.181 8 C -0.005 4.005 9 C 0.596 3.404 10 O -0.551 6.551 11 N -0.685 5.685 12 C 0.119 3.881 13 C 0.189 3.811 14 N -0.707 5.707 15 C -0.230 4.230 16 H 0.069 0.931 17 C -0.008 4.008 18 N -0.930 5.930 19 Si 0.899 3.101 20 H -0.286 1.286 21 H -0.293 1.293 22 H -0.287 1.287 23 C -0.131 4.131 24 C -0.113 4.113 25 C -0.118 4.118 26 C -0.124 4.124 27 N -0.252 5.252 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.088 0.912 31 H 0.057 0.943 32 H 0.076 0.924 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.180 0.820 36 H 0.161 0.839 37 H 0.410 0.590 38 H 0.056 0.944 39 H 0.066 0.934 40 H 0.385 0.615 41 H 0.253 0.747 42 H 0.074 0.926 43 H 0.053 0.947 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.053 0.947 47 H 0.056 0.944 48 H 0.062 0.938 49 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.458 -10.482 3.234 14.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.311 6.311 3 C -0.030 4.030 4 C 0.007 3.993 5 N -0.075 5.075 6 C -0.163 4.163 7 C -0.209 4.209 8 C -0.166 4.166 9 C 0.380 3.620 10 O -0.429 6.429 11 N -0.334 5.334 12 C -0.007 4.007 13 C 0.096 3.904 14 N -0.348 5.348 15 C -0.361 4.361 16 H 0.087 0.913 17 C -0.204 4.204 18 N -0.579 5.579 19 Si 0.731 3.269 20 H -0.213 1.213 21 H -0.219 1.219 22 H -0.214 1.214 23 C -0.171 4.171 24 C -0.150 4.150 25 C -0.156 4.156 26 C -0.162 4.162 27 N -0.088 5.088 28 H 0.062 0.938 29 H 0.069 0.931 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.120 0.880 34 H 0.128 0.872 35 H 0.198 0.802 36 H 0.179 0.821 37 H 0.247 0.753 38 H 0.075 0.925 39 H 0.084 0.916 40 H 0.219 0.781 41 H 0.063 0.937 42 H 0.093 0.907 43 H 0.072 0.928 44 H 0.069 0.931 45 H 0.088 0.912 46 H 0.072 0.928 47 H 0.075 0.925 48 H 0.080 0.920 49 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.109 -10.450 2.827 14.148 hybrid contribution -0.807 0.440 1.184 1.499 sum 8.302 -10.010 4.011 13.609 Atomic orbital electron populations 1.22796 0.79661 1.02888 1.00965 1.87716 1.20833 1.26813 1.95724 1.22680 0.91875 0.85530 1.02965 1.21630 0.93291 0.78566 1.05804 1.45329 1.31319 1.11542 1.19292 1.22822 0.98199 0.96807 0.98510 1.21767 1.04660 0.95866 0.98584 1.22136 1.00826 0.94205 0.99470 1.16876 0.80279 0.84701 0.80193 1.90737 1.43915 1.39480 1.68739 1.45637 1.43406 1.17376 1.26980 1.21871 0.98693 0.85768 0.94330 1.20630 0.86428 0.92960 0.90342 1.42388 1.09570 1.26582 1.56278 1.19040 0.98789 0.98316 1.19993 0.91320 1.24663 0.98335 0.96745 1.00648 1.69648 1.20460 1.18888 1.48855 0.86386 0.79628 0.79725 0.81184 1.21298 1.21902 1.21368 1.22883 1.00245 0.98546 0.95425 1.22194 1.00666 0.95661 0.96524 1.22056 0.99340 0.97513 0.96678 1.22377 1.00041 0.99118 0.94641 1.73611 1.21848 0.97715 1.15592 0.93819 0.93095 0.89313 0.92485 0.90587 0.88019 0.87242 0.80246 0.82110 0.75342 0.92543 0.91557 0.78065 0.93706 0.90740 0.92786 0.93085 0.91220 0.92812 0.92482 0.91976 0.91677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 101.05 1.11 1.43 16 2 O -0.39 -4.43 10.70 -35.23 -0.38 -4.81 16 3 C 0.05 0.54 6.04 37.16 0.22 0.77 16 4 C 0.13 1.22 6.77 -4.05 -0.03 1.19 16 5 N -0.29 -3.61 3.41 -61.33 -0.21 -3.82 16 6 C -0.02 -0.24 11.40 -17.17 -0.20 -0.44 16 7 C -0.18 -2.57 10.81 -39.36 -0.43 -3.00 16 8 C -0.01 -0.09 7.13 -82.77 -0.59 -0.68 16 9 C 0.60 11.83 7.82 -12.39 -0.10 11.74 16 10 O -0.55 -12.09 16.92 5.31 0.09 -12.00 16 11 N -0.68 -13.33 5.24 -61.29 -0.32 -13.65 16 12 C 0.12 2.30 4.29 -4.04 -0.02 2.28 16 13 C 0.19 3.52 0.52 -130.16 -0.07 3.46 16 14 N -0.71 -16.13 4.70 -45.70 -0.21 -16.35 16 15 C -0.23 -5.99 8.59 -15.06 -0.13 -6.12 16 16 H 0.07 1.79 7.13 -52.48 -0.37 1.42 16 17 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 18 N -0.93 -26.71 13.07 55.49 0.73 -25.99 16 19 Si 0.90 22.28 29.55 -169.99 -5.02 17.26 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.29 -7.34 7.11 56.52 0.40 -6.93 16 22 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 23 C -0.13 -2.28 5.90 -24.74 -0.15 -2.42 16 24 C -0.11 -1.80 6.79 -25.07 -0.17 -1.97 16 25 C -0.12 -1.74 6.80 -25.61 -0.17 -1.91 16 26 C -0.12 -1.99 5.70 -25.61 -0.15 -2.14 16 27 N -0.25 -4.13 11.36 33.42 0.38 -3.75 16 28 H 0.04 0.40 8.14 -51.93 -0.42 -0.03 16 29 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.08 1.06 8.08 -51.93 -0.42 0.64 16 33 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 34 H 0.11 0.70 8.04 -51.93 -0.42 0.29 16 35 H 0.18 1.20 8.06 -52.49 -0.42 0.77 16 36 H 0.16 2.07 8.06 -52.48 -0.42 1.65 16 37 H 0.41 8.14 7.79 -40.82 -0.32 7.83 16 38 H 0.06 1.02 8.08 -51.93 -0.42 0.60 16 39 H 0.07 1.43 7.52 -51.93 -0.39 1.04 16 40 H 0.38 9.47 7.50 -40.82 -0.31 9.16 16 41 H 0.25 7.18 8.31 -40.82 -0.34 6.84 16 42 H 0.07 1.45 7.20 -51.93 -0.37 1.07 16 43 H 0.05 0.84 8.06 -51.93 -0.42 0.42 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 46 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.06 0.93 7.80 -51.93 -0.40 0.53 16 49 H 0.06 1.09 7.76 -51.93 -0.40 0.68 16 LS Contribution 404.00 15.07 6.09 6.09 Total: -1.00 -31.86 404.00 -7.84 -39.70 By element: Atomic # 1 Polarization: 23.47 SS G_CDS: -8.03 Total: 15.44 kcal Atomic # 6 Polarization: 2.83 SS G_CDS: -0.95 Total: 1.88 kcal Atomic # 7 Polarization: -63.92 SS G_CDS: 0.36 Total: -63.56 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: -0.29 Total: -16.81 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -31.86 -7.84 -39.70 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666775210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.856 kcal (2) G-P(sol) polarization free energy of solvation -31.856 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.839 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds