Wall clock time and date at job start Tue Mar 31 2020 19:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42902 * 114.00121 * 2 1 4 4 C 1.52996 * 109.47284 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47031 * 180.02562 * 4 3 2 6 6 C 1.35041 * 124.88732 * 124.97121 * 5 4 3 7 7 C 1.35359 * 107.22843 * 179.76176 * 6 5 4 8 8 C 1.41504 * 105.50647 * 0.35967 * 7 6 5 9 9 C 1.47712 * 126.51958 * 179.90145 * 8 7 6 10 10 O 1.21567 * 120.00197 * 359.70751 * 9 8 7 11 11 N 1.34774 * 119.99774 * 179.71619 * 9 8 7 12 12 C 1.46504 * 119.99844 * 179.97438 * 11 9 8 13 13 C 1.52998 * 109.47225 * 175.53634 * 12 11 9 14 14 N 1.46506 * 110.53641 * 57.61931 * 13 12 11 15 15 C 1.36933 * 120.00401 * 58.62243 * 14 13 12 16 16 H 1.08006 * 119.99300 * 6.53639 * 15 14 13 17 17 C 1.38804 * 120.00073 * 186.53661 * 15 14 13 18 18 N 1.31618 * 120.00404 * 359.97438 * 17 15 14 19 19 Si 1.86807 * 119.99803 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47086 * 60.00336 * 19 17 15 21 21 H 1.48503 * 109.46908 * 179.97438 * 19 17 15 22 22 H 1.48496 * 109.47168 * 299.99926 * 19 17 15 23 23 C 1.54889 * 110.48686 * 180.22825 * 13 12 11 24 24 C 1.54895 * 102.74848 * 156.62225 * 23 13 12 25 25 C 1.54272 * 104.19256 * 322.05887 * 24 23 13 26 26 C 1.53871 * 106.60145 * 23.60982 * 25 24 23 27 27 N 1.28475 * 124.88780 * 304.97421 * 5 4 3 28 28 H 1.08999 * 109.47098 * 299.99626 * 1 2 3 29 29 H 1.08999 * 109.47169 * 60.00447 * 1 2 3 30 30 H 1.09002 * 109.46870 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46745 * 59.99647 * 3 2 1 32 32 H 1.09002 * 109.47047 * 300.00553 * 3 2 1 33 33 H 1.08998 * 109.47243 * 60.00038 * 4 3 2 34 34 H 1.09002 * 109.46854 * 299.99532 * 4 3 2 35 35 H 1.07999 * 126.38311 * 0.03783 * 6 5 4 36 36 H 1.08009 * 127.24969 * 180.24462 * 7 6 5 37 37 H 0.97003 * 120.00165 * 359.97438 * 11 9 8 38 38 H 1.08997 * 109.46833 * 55.53835 * 12 11 9 39 39 H 1.09005 * 109.47165 * 295.53940 * 12 11 9 40 40 H 0.96999 * 119.99526 * 238.62385 * 14 13 12 41 41 H 0.97001 * 120.00469 * 179.97438 * 18 17 15 42 42 H 1.08995 * 110.75801 * 274.93614 * 23 13 12 43 43 H 1.09001 * 110.75426 * 38.30728 * 23 13 12 44 44 H 1.08994 * 110.48349 * 203.38368 * 24 23 13 45 45 H 1.08997 * 110.48700 * 80.73417 * 24 23 13 46 46 H 1.09001 * 110.03304 * 264.32241 * 25 24 23 47 47 H 1.09006 * 110.03030 * 142.89386 * 25 24 23 48 48 H 1.08998 * 110.03485 * 240.71240 * 26 25 24 49 49 H 1.08996 * 110.03357 * 119.27899 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1847 -0.0006 5 7 4.1312 2.5230 0.0000 6 6 5.0257 2.9698 0.9076 7 6 5.3392 4.2423 0.5688 8 6 4.5727 4.5259 -0.5864 9 6 4.5588 5.7948 -1.3424 10 8 5.2512 6.7260 -0.9799 11 7 3.7782 5.9204 -2.4339 12 6 3.7639 7.1791 -3.1833 13 6 2.8893 7.0213 -4.4287 14 7 1.5303 6.6215 -4.0550 15 6 0.7889 7.4135 -3.2195 16 1 1.1629 8.3817 -2.9205 17 6 -0.4431 6.9722 -2.7570 18 7 -0.8991 5.7926 -3.1218 19 14 -1.4542 8.0524 -1.6166 20 1 -1.7650 9.3355 -2.2966 21 1 -2.7199 7.3574 -1.2696 22 1 -0.6819 8.3233 -0.3775 23 6 2.8623 8.3388 -5.2427 24 6 2.4969 7.8530 -6.6674 25 6 3.2589 6.5202 -6.8195 26 6 3.5083 5.9914 -5.3962 27 7 3.8779 3.4406 -0.8629 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.6885 1.8464 0.8900 32 1 1.6885 1.8464 -0.8900 33 1 3.8567 0.6439 -0.8908 34 1 3.8574 0.6437 0.8892 35 1 5.4210 2.4139 1.7449 36 1 6.0279 4.9028 1.0747 37 1 3.2259 5.1773 -2.7232 38 1 4.7802 7.4350 -3.4831 39 1 3.3602 7.9722 -2.5539 40 1 1.1557 5.7958 -4.3995 41 1 -1.7599 5.4840 -2.7982 42 1 2.0992 9.0152 -4.8577 43 1 3.8420 8.8166 -5.2369 44 1 2.8337 8.5723 -7.4137 45 1 1.4225 7.6898 -6.7509 46 1 4.2087 6.6889 -7.3270 47 1 2.6558 5.8075 -7.3822 48 1 4.5792 5.9035 -5.2129 49 1 3.0264 5.0222 -5.2681 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001666775210.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:15:35 Heat of formation + Delta-G solvation = -17.256870 kcal Electronic energy + Delta-G solvation = -29954.553968 eV Core-core repulsion = 25917.759103 eV Total energy + Delta-G solvation = -4036.794865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -43.64533 -40.68758 -39.44892 -38.99937 -35.55276 -35.12502 -34.92406 -32.41768 -31.69721 -30.67573 -29.54992 -29.45398 -27.43451 -26.36722 -25.43086 -24.53227 -23.04514 -22.37287 -21.44767 -20.71534 -20.15446 -19.03432 -18.78609 -17.98733 -17.42445 -17.22836 -17.05167 -16.77559 -16.45077 -16.17446 -16.01979 -15.73060 -15.51393 -15.18237 -15.03817 -14.78658 -14.39385 -14.25149 -13.99921 -13.91991 -13.48290 -13.12900 -13.00985 -12.91424 -12.65279 -12.41840 -12.38277 -12.36303 -12.28795 -11.95179 -11.84647 -11.73600 -11.59694 -11.41982 -11.22790 -11.17800 -10.84402 -10.82475 -10.32762 -10.09642 -9.85225 -8.94780 -7.90277 -5.15791 0.54893 1.19192 1.37365 1.42505 1.43714 1.48463 2.29915 2.44668 2.55751 2.75981 3.39671 3.43410 3.76270 3.77967 3.80955 3.82873 3.94256 4.00400 4.11446 4.16040 4.23214 4.41048 4.44524 4.47267 4.59358 4.60627 4.66223 4.67103 4.73916 4.77165 4.79487 4.80928 4.86953 4.99010 5.05834 5.12987 5.20896 5.22602 5.34726 5.40436 5.47817 5.55637 5.61725 5.69717 5.84151 5.96563 6.32441 6.54785 6.92897 7.23738 7.39882 8.13554 8.38517 9.31845 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.008009 B = 0.004095 C = 0.003408 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3495.019312 B = 6836.123817 C = 8215.136375 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.395 6.395 3 C 0.051 3.949 4 C 0.127 3.873 5 N -0.280 5.280 6 C 0.010 3.990 7 C -0.201 4.201 8 C -0.041 4.041 9 C 0.590 3.410 10 O -0.581 6.581 11 N -0.686 5.686 12 C 0.125 3.875 13 C 0.183 3.817 14 N -0.710 5.710 15 C -0.214 4.214 16 H 0.064 0.936 17 C -0.064 4.064 18 N -0.959 5.959 19 Si 0.949 3.051 20 H -0.280 1.280 21 H -0.296 1.296 22 H -0.292 1.292 23 C -0.129 4.129 24 C -0.109 4.109 25 C -0.112 4.112 26 C -0.117 4.117 27 N -0.281 5.281 28 H 0.048 0.952 29 H 0.036 0.964 30 H 0.113 0.887 31 H 0.053 0.947 32 H 0.041 0.959 33 H 0.111 0.889 34 H 0.155 0.845 35 H 0.236 0.764 36 H 0.169 0.831 37 H 0.407 0.593 38 H 0.073 0.927 39 H 0.036 0.964 40 H 0.375 0.625 41 H 0.246 0.754 42 H 0.048 0.952 43 H 0.079 0.921 44 H 0.078 0.922 45 H 0.042 0.958 46 H 0.082 0.918 47 H 0.060 0.940 48 H 0.078 0.922 49 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.248 -11.917 3.697 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.313 6.313 3 C -0.027 4.027 4 C 0.007 3.993 5 N -0.069 5.069 6 C -0.132 4.132 7 C -0.229 4.229 8 C -0.200 4.200 9 C 0.376 3.624 10 O -0.460 6.460 11 N -0.334 5.334 12 C -0.001 4.001 13 C 0.092 3.908 14 N -0.350 5.350 15 C -0.346 4.346 16 H 0.082 0.918 17 C -0.257 4.257 18 N -0.610 5.610 19 Si 0.780 3.220 20 H -0.207 1.207 21 H -0.223 1.223 22 H -0.219 1.219 23 C -0.169 4.169 24 C -0.146 4.146 25 C -0.149 4.149 26 C -0.155 4.155 27 N -0.117 5.117 28 H 0.067 0.933 29 H 0.054 0.946 30 H 0.131 0.869 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.129 0.871 34 H 0.173 0.827 35 H 0.252 0.748 36 H 0.186 0.814 37 H 0.243 0.757 38 H 0.091 0.909 39 H 0.054 0.946 40 H 0.208 0.792 41 H 0.055 0.945 42 H 0.066 0.934 43 H 0.097 0.903 44 H 0.096 0.904 45 H 0.061 0.939 46 H 0.101 0.899 47 H 0.078 0.922 48 H 0.096 0.904 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 10.922 -11.862 3.267 16.452 hybrid contribution -1.314 0.834 1.064 1.885 sum 9.608 -11.028 4.331 15.254 Atomic orbital electron populations 1.22953 0.79017 1.04383 1.00511 1.87705 1.21585 1.26378 1.95631 1.22566 0.93536 0.85457 1.01140 1.21949 0.91559 0.77257 1.08504 1.45682 1.30944 1.11744 1.18564 1.23563 0.95775 0.95642 0.98236 1.22024 1.05202 0.97632 0.98069 1.21969 1.03158 0.93819 1.01093 1.17312 0.79541 0.85536 0.80015 1.90694 1.45069 1.40809 1.69467 1.45671 1.43361 1.17137 1.27230 1.21813 0.99401 0.85051 0.93871 1.20882 0.84312 0.94810 0.90770 1.42438 1.11044 1.25735 1.55748 1.19217 0.98550 0.98062 1.18801 0.91774 1.25227 0.99761 0.97978 1.02747 1.69766 1.20526 1.20201 1.50475 0.85575 0.78198 0.78646 0.79534 1.20654 1.22268 1.21930 1.22850 1.00803 0.97200 0.96027 1.22154 0.99310 0.97113 0.96064 1.22043 1.00635 0.96563 0.95680 1.22328 1.00547 0.97736 0.94920 1.73550 1.22533 0.98322 1.17326 0.93323 0.94554 0.86881 0.92849 0.94017 0.87117 0.82750 0.74783 0.81391 0.75680 0.90905 0.94559 0.79228 0.94465 0.93351 0.90287 0.90372 0.93884 0.89896 0.92166 0.90363 0.92621 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 113.37 1.25 1.76 16 2 O -0.39 -8.40 10.70 -148.98 -1.59 -9.99 16 3 C 0.05 1.13 6.04 71.98 0.43 1.57 16 4 C 0.13 2.07 6.77 86.38 0.58 2.65 16 5 N -0.28 -6.50 3.41 -347.96 -1.19 -7.69 16 6 C 0.01 0.19 11.40 83.53 0.95 1.14 16 7 C -0.20 -5.47 10.81 22.41 0.24 -5.23 16 8 C -0.04 -1.45 7.13 42.46 0.30 -1.15 16 9 C 0.59 24.19 7.82 86.75 0.68 24.87 16 10 O -0.58 -26.20 16.92 -3.93 -0.07 -26.26 16 11 N -0.69 -27.58 5.24 -466.10 -2.44 -30.02 16 12 C 0.12 4.89 4.29 86.38 0.37 5.26 16 13 C 0.18 6.87 0.52 4.68 0.00 6.87 16 14 N -0.71 -33.33 4.70 -298.49 -1.40 -34.73 16 15 C -0.21 -11.47 8.59 84.03 0.72 -10.74 16 16 H 0.06 3.46 7.13 -2.91 -0.02 3.44 16 17 C -0.06 -3.64 5.50 84.86 0.47 -3.18 16 18 N -0.96 -56.83 13.07 21.65 0.28 -56.55 16 19 Si 0.95 47.02 29.55 68.60 2.03 49.05 16 20 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 21 H -0.30 -14.74 7.11 99.48 0.71 -14.03 16 22 H -0.29 -14.56 7.11 99.48 0.71 -13.85 16 23 C -0.13 -4.40 5.90 31.89 0.19 -4.22 16 24 C -0.11 -3.30 6.79 31.67 0.22 -3.08 16 25 C -0.11 -3.02 6.80 31.32 0.21 -2.81 16 26 C -0.12 -3.65 5.70 31.32 0.18 -3.48 16 27 N -0.28 -9.18 11.36 -48.18 -0.55 -9.73 16 28 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.04 1.21 8.08 -2.39 -0.02 1.19 16 33 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 34 H 0.15 1.20 8.04 -2.39 -0.02 1.18 16 35 H 0.24 1.68 8.06 -2.91 -0.02 1.66 16 36 H 0.17 4.16 8.06 -2.91 -0.02 4.14 16 37 H 0.41 16.86 7.79 -92.71 -0.72 16.14 16 38 H 0.07 2.60 8.08 -2.39 -0.02 2.59 16 39 H 0.04 1.63 7.52 -2.38 -0.02 1.61 16 40 H 0.37 19.08 7.50 -92.71 -0.69 18.39 16 41 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 42 H 0.05 1.90 7.20 -2.39 -0.02 1.88 16 43 H 0.08 2.31 8.06 -2.39 -0.02 2.29 16 44 H 0.08 1.95 8.14 -2.39 -0.02 1.94 16 45 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 46 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 47 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 48 H 0.08 2.20 7.80 -2.39 -0.02 2.18 16 49 H 0.06 1.85 7.76 -2.39 -0.02 1.83 16 Total: -1.00 -72.77 404.00 1.41 -71.36 By element: Atomic # 1 Polarization: 44.78 SS G_CDS: -0.46 Total: 44.32 kcal Atomic # 6 Polarization: 3.44 SS G_CDS: 6.80 Total: 10.24 kcal Atomic # 7 Polarization: -133.42 SS G_CDS: -5.30 Total: -138.72 kcal Atomic # 8 Polarization: -34.59 SS G_CDS: -1.66 Total: -36.25 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 2.03 Total: 49.05 kcal Total: -72.77 1.41 -71.36 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001666775210.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.100 kcal (2) G-P(sol) polarization free energy of solvation -72.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.412 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.357 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds