Wall clock time and date at job start Tue Mar 31 2020 19:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 C 1.52995 * 109.47082 * 240.00242 * 2 1 3 5 5 N 1.46499 * 109.46994 * 119.99886 * 2 1 3 6 6 N 1.28780 * 125.44991 * 359.97438 * 5 2 1 7 7 N 1.28997 * 108.72795 * 180.02562 * 6 5 2 8 8 C 1.33322 * 107.35150 * 359.97438 * 7 6 5 9 9 C 1.50702 * 126.54465 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47130 * 90.03093 * 9 8 7 11 11 O 1.21279 * 119.99636 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00017 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64712 * 355.05431 * 12 10 9 14 14 C 1.54905 * 104.92593 * 155.83526 * 13 12 10 15 15 C 1.55443 * 101.45391 * 37.00372 * 14 13 12 16 16 C 1.47016 * 125.64708 * 175.07204 * 12 10 9 17 17 H 1.09002 * 109.88552 * 300.45942 * 16 12 10 18 18 C 1.52999 * 109.88063 * 61.47189 * 16 12 10 19 19 N 1.46500 * 109.47088 * 185.23125 * 18 16 12 20 20 C 1.36940 * 120.00150 * 185.01631 * 19 18 16 21 21 H 1.07998 * 119.99552 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00000 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99711 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00318 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47033 * 89.99937 * 24 22 20 26 26 H 1.48498 * 109.47121 * 210.00231 * 24 22 20 27 27 H 1.48506 * 109.46768 * 330.00064 * 24 22 20 28 28 N 1.28880 * 125.44696 * 180.30978 * 5 2 1 29 29 H 1.09000 * 109.46795 * 300.00172 * 1 2 3 30 30 H 1.08996 * 109.46784 * 59.99920 * 1 2 3 31 31 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46672 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47476 * 299.99656 * 3 2 1 34 34 H 1.09003 * 109.47061 * 60.00227 * 3 2 1 35 35 H 1.09003 * 109.47411 * 299.99941 * 4 2 1 36 36 H 1.09004 * 109.47431 * 59.99976 * 4 2 1 37 37 H 1.09001 * 109.47057 * 180.02562 * 4 2 1 38 38 H 1.08995 * 109.47600 * 330.02628 * 9 8 7 39 39 H 1.09000 * 109.46588 * 210.02320 * 9 8 7 40 40 H 1.09000 * 110.36553 * 274.72784 * 13 12 10 41 41 H 1.08997 * 110.36906 * 36.94378 * 13 12 10 42 42 H 1.09006 * 111.00401 * 155.13824 * 14 13 12 43 43 H 1.09004 * 111.00726 * 278.98769 * 14 13 12 44 44 H 1.09000 * 110.70983 * 206.14408 * 15 14 13 45 45 H 1.09000 * 110.86475 * 82.95836 * 15 14 13 46 46 H 1.09001 * 109.47188 * 305.22594 * 18 16 12 47 47 H 1.08994 * 109.47718 * 65.22862 * 18 16 12 48 48 H 0.97000 * 120.00141 * 5.00710 * 19 18 16 49 49 H 0.96999 * 119.99766 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 7 1.2783 -1.2171 2.1091 7 7 2.0400 -1.7373 3.0109 8 6 3.3018 -1.5227 2.6376 9 6 4.5420 -1.9502 3.3793 10 6 4.9555 -3.3237 2.9169 11 8 4.3066 -3.8989 2.0690 12 7 6.0463 -3.9127 3.4457 13 6 6.9799 -3.2909 4.4023 14 6 7.6339 -4.4788 5.1511 15 6 7.7694 -5.5259 4.0103 16 6 6.5024 -5.2816 3.1638 17 1 5.7272 -5.9955 3.4423 18 6 6.8309 -5.4246 1.6763 19 7 7.1639 -6.8205 1.3818 20 6 7.5935 -7.1725 0.1300 21 1 7.6864 -6.4210 -0.6401 22 6 7.9095 -8.4950 -0.1489 23 7 8.3219 -8.8334 -1.3522 24 14 7.7495 -9.7946 1.1833 25 1 6.3824 -10.3736 1.1483 26 1 8.7481 -10.8686 0.9498 27 1 7.9906 -9.1747 2.5111 28 7 3.2574 -0.8630 1.5062 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7216 -1.2490 38 1 4.3356 -1.9739 4.4493 39 1 5.3466 -1.2423 3.1800 40 1 7.7373 -2.7133 3.8723 41 1 6.4383 -2.6538 5.1014 42 1 8.6107 -4.2009 5.5472 43 1 6.9829 -4.8469 5.9442 44 1 7.7739 -6.5381 4.4146 45 1 8.6680 -5.3437 3.4209 46 1 5.9674 -5.1241 1.0830 47 1 7.6807 -4.7884 1.4291 48 1 7.0802 -7.4954 2.0734 49 1 8.5431 -9.7575 -1.5470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671297536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:13 Heat of formation + Delta-G solvation = 109.024659 kcal Electronic energy + Delta-G solvation = -29613.989399 eV Core-core repulsion = 25614.963264 eV Total energy + Delta-G solvation = -3999.026135 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.39600 -40.13903 -38.00166 -37.41918 -34.68726 -33.63750 -33.27693 -31.83151 -31.41490 -29.74939 -28.82419 -27.97495 -27.82498 -25.28073 -24.69495 -23.56502 -22.27093 -21.86079 -20.83988 -20.62166 -19.08643 -17.75588 -17.32601 -17.23621 -16.79055 -16.34301 -15.47577 -14.83186 -14.65793 -14.50859 -14.44567 -14.25636 -13.91335 -13.77915 -13.56005 -13.35559 -13.03955 -12.97502 -12.86394 -12.76854 -12.69506 -12.39233 -12.31214 -12.27648 -12.00571 -11.89487 -11.60710 -11.47345 -11.28908 -11.13626 -10.95330 -10.89321 -10.86857 -10.64104 -10.50296 -10.30998 -10.11836 -9.66602 -9.53562 -8.81350 -8.52793 -7.15827 -5.70872 -3.05884 1.21942 1.72404 2.06489 2.67902 3.00356 3.39942 3.44472 3.48747 3.65888 3.94634 4.10522 4.21453 4.39360 4.41335 4.51790 4.64216 4.85668 4.90475 4.95999 4.98088 5.01626 5.07458 5.12981 5.20867 5.23826 5.28444 5.31385 5.32608 5.46983 5.49154 5.55983 5.58315 5.65130 5.66240 5.74579 5.76879 5.84728 5.86097 5.96414 6.03954 6.17428 6.29343 6.42270 6.74584 6.97745 7.56726 8.05140 8.23345 8.35802 8.47800 9.26847 9.98967 10.19164 11.47854 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.002859 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.649941 B = 9792.702308 C =11329.841118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 C -0.157 4.157 4 C -0.161 4.161 5 N -0.129 5.129 6 N -0.063 5.063 7 N -0.277 5.277 8 C 0.185 3.815 9 C -0.038 4.038 10 C 0.533 3.467 11 O -0.517 6.517 12 N -0.611 5.611 13 C 0.097 3.903 14 C -0.134 4.134 15 C -0.124 4.124 16 C 0.129 3.871 17 H 0.074 0.926 18 C 0.149 3.851 19 N -0.752 5.752 20 C -0.238 4.238 21 H 0.089 0.911 22 C 0.002 3.998 23 N -0.936 5.936 24 Si 0.885 3.115 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.277 1.277 28 N -0.292 5.292 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.076 0.924 32 H 0.077 0.923 33 H 0.089 0.911 34 H 0.066 0.934 35 H 0.070 0.930 36 H 0.089 0.911 37 H 0.078 0.922 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.072 0.928 41 H 0.076 0.924 42 H 0.083 0.917 43 H 0.074 0.926 44 H 0.080 0.920 45 H 0.085 0.915 46 H 0.042 0.958 47 H 0.029 0.971 48 H 0.360 0.640 49 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.206 23.957 11.110 28.311 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.098 3.902 3 C -0.215 4.215 4 C -0.219 4.219 5 N -0.043 5.043 6 N -0.056 5.056 7 N -0.148 5.148 8 C -0.099 4.099 9 C -0.081 4.081 10 C 0.318 3.682 11 O -0.391 6.391 12 N -0.347 5.347 13 C -0.026 4.026 14 C -0.172 4.172 15 C -0.162 4.162 16 C 0.026 3.974 17 H 0.093 0.907 18 C 0.022 3.978 19 N -0.398 5.398 20 C -0.367 4.367 21 H 0.107 0.893 22 C -0.193 4.193 23 N -0.585 5.585 24 Si 0.715 3.285 25 H -0.211 1.211 26 H -0.218 1.218 27 H -0.203 1.203 28 N -0.142 5.142 29 H 0.093 0.907 30 H 0.107 0.893 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.089 0.911 36 H 0.108 0.892 37 H 0.097 0.903 38 H 0.141 0.859 39 H 0.139 0.861 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.102 0.898 43 H 0.093 0.907 44 H 0.099 0.901 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.047 0.953 48 H 0.192 0.808 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -11.248 23.811 10.212 28.245 hybrid contribution 0.512 -1.178 0.916 1.577 sum -10.736 22.633 11.127 27.411 Atomic orbital electron populations 1.22086 0.90158 1.04721 1.04081 1.21388 0.96382 0.92617 0.79828 1.22222 1.03344 0.92120 1.03854 1.22250 1.03568 1.01328 0.94754 1.50409 1.01102 1.34772 1.17990 1.78872 1.21952 1.09231 0.95507 1.75784 1.00713 1.17991 1.20345 1.24567 0.94784 0.98650 0.91853 1.19818 0.91920 0.95812 1.00502 1.19732 0.79789 0.86810 0.81825 1.90800 1.52855 1.64897 1.30557 1.48409 1.25417 1.15410 1.45468 1.22385 0.92574 0.96291 0.91337 1.22836 1.01213 0.95398 0.97712 1.22754 0.97903 0.99596 0.95965 1.21849 0.96000 0.82374 0.97218 0.90748 1.20957 0.98354 0.87220 0.91302 1.42557 1.82096 1.03520 1.11638 1.19039 1.35961 0.94216 0.87533 0.89335 1.24655 1.01514 0.96784 0.96334 1.69707 1.51778 1.17542 1.19439 0.86532 0.77609 0.82323 0.81991 1.21109 1.21758 1.20314 1.74542 1.03278 1.20438 1.15967 0.90717 0.89290 0.90514 0.90381 0.89199 0.91541 0.91127 0.89224 0.90253 0.85864 0.86145 0.90929 0.90579 0.89796 0.90690 0.90140 0.89605 0.94015 0.95321 0.80799 0.93126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 7.91 37.16 0.29 -0.69 16 2 C 0.18 1.50 1.30 -131.82 -0.17 1.33 16 3 C -0.16 -0.95 8.66 37.16 0.32 -0.63 16 4 C -0.16 -1.34 8.67 37.16 0.32 -1.01 16 5 N -0.13 -1.63 3.73 0.48 0.00 -1.63 16 6 N -0.06 -0.92 12.24 60.35 0.74 -0.18 16 7 N -0.28 -4.35 12.50 32.45 0.41 -3.94 16 8 C 0.18 2.65 6.86 -156.62 -1.07 1.57 16 9 C -0.04 -0.42 5.26 -29.03 -0.15 -0.57 16 10 C 0.53 8.23 7.66 -10.98 -0.08 8.15 16 11 O -0.52 -10.74 14.81 5.56 0.08 -10.66 16 12 N -0.61 -8.46 3.07 -163.02 -0.50 -8.96 16 13 C 0.10 0.88 6.73 -2.53 -0.02 0.86 16 14 C -0.13 -1.21 7.11 -24.43 -0.17 -1.39 16 15 C -0.12 -1.66 6.25 -24.74 -0.15 -1.81 16 16 C 0.13 2.14 2.94 -66.96 -0.20 1.94 16 17 H 0.07 1.34 8.14 -51.93 -0.42 0.91 16 18 C 0.15 3.22 5.66 -4.04 -0.02 3.20 16 19 N -0.75 -18.95 5.22 -59.91 -0.31 -19.26 16 20 C -0.24 -7.08 10.47 -15.06 -0.16 -7.24 16 21 H 0.09 2.84 8.06 -52.49 -0.42 2.42 16 22 C 0.00 0.07 5.50 -17.43 -0.10 -0.02 16 23 N -0.94 -30.35 13.97 55.49 0.78 -29.58 16 24 Si 0.89 22.75 27.73 -169.99 -4.71 18.04 16 25 H -0.28 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.51 7.11 56.52 0.40 -7.10 16 27 H -0.28 -6.55 6.52 56.52 0.37 -6.18 16 28 N -0.29 -4.11 11.83 32.47 0.38 -3.73 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 36 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.12 1.01 7.95 -51.93 -0.41 0.59 16 39 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 40 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 0.47 7.47 -51.93 -0.39 0.08 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 45 H 0.09 1.24 7.77 -51.93 -0.40 0.83 16 46 H 0.04 1.03 6.54 -51.93 -0.34 0.69 16 47 H 0.03 0.62 8.02 -51.93 -0.42 0.20 16 48 H 0.36 8.69 5.48 -40.82 -0.22 8.47 16 49 H 0.26 7.95 8.31 -40.82 -0.34 7.61 16 LS Contribution 398.55 15.07 6.01 6.01 Total: -1.00 -39.43 398.55 -6.61 -46.04 By element: Atomic # 1 Polarization: 12.27 SS G_CDS: -8.12 Total: 4.15 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -1.36 Total: 3.69 kcal Atomic # 7 Polarization: -68.76 SS G_CDS: 1.49 Total: -67.27 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 22.75 SS G_CDS: -4.71 Total: 18.04 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -39.43 -6.61 -46.04 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671297536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 155.068 kcal (2) G-P(sol) polarization free energy of solvation -39.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.043 kcal (6) G-S(sol) free energy of system = (1) + (5) 109.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds