Wall clock time and date at job start Tue Mar 31 2020 19:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.46881 * 2 1 4 4 C 1.52995 * 109.47082 * 240.00242 * 2 1 3 5 5 N 1.46499 * 109.46994 * 119.99886 * 2 1 3 6 6 N 1.28780 * 125.44991 * 359.97438 * 5 2 1 7 7 N 1.28997 * 108.72795 * 180.02562 * 6 5 2 8 8 C 1.33322 * 107.35150 * 359.97438 * 7 6 5 9 9 C 1.50702 * 126.54465 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47130 * 90.03093 * 9 8 7 11 11 O 1.21279 * 119.99636 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00017 * 179.97438 * 10 9 8 13 13 C 1.47426 * 125.64712 * 355.05431 * 12 10 9 14 14 C 1.54905 * 104.92593 * 155.83526 * 13 12 10 15 15 C 1.55443 * 101.45391 * 37.00372 * 14 13 12 16 16 C 1.47016 * 125.64708 * 175.07204 * 12 10 9 17 17 H 1.09002 * 109.88552 * 300.45942 * 16 12 10 18 18 C 1.52999 * 109.88063 * 61.47189 * 16 12 10 19 19 N 1.46500 * 109.47088 * 185.23125 * 18 16 12 20 20 C 1.36940 * 120.00150 * 185.01631 * 19 18 16 21 21 H 1.07998 * 119.99552 * 359.97438 * 20 19 18 22 22 C 1.38810 * 120.00000 * 179.97438 * 20 19 18 23 23 N 1.31625 * 119.99711 * 179.97438 * 22 20 19 24 24 Si 1.86800 * 120.00318 * 359.97438 * 22 20 19 25 25 H 1.48501 * 109.47033 * 89.99937 * 24 22 20 26 26 H 1.48498 * 109.47121 * 210.00231 * 24 22 20 27 27 H 1.48506 * 109.46768 * 330.00064 * 24 22 20 28 28 N 1.28880 * 125.44696 * 180.30978 * 5 2 1 29 29 H 1.09000 * 109.46795 * 300.00172 * 1 2 3 30 30 H 1.08996 * 109.46784 * 59.99920 * 1 2 3 31 31 H 1.08996 * 109.46880 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.46672 * 179.97438 * 3 2 1 33 33 H 1.08996 * 109.47476 * 299.99656 * 3 2 1 34 34 H 1.09003 * 109.47061 * 60.00227 * 3 2 1 35 35 H 1.09003 * 109.47411 * 299.99941 * 4 2 1 36 36 H 1.09004 * 109.47431 * 59.99976 * 4 2 1 37 37 H 1.09001 * 109.47057 * 180.02562 * 4 2 1 38 38 H 1.08995 * 109.47600 * 330.02628 * 9 8 7 39 39 H 1.09000 * 109.46588 * 210.02320 * 9 8 7 40 40 H 1.09000 * 110.36553 * 274.72784 * 13 12 10 41 41 H 1.08997 * 110.36906 * 36.94378 * 13 12 10 42 42 H 1.09006 * 111.00401 * 155.13824 * 14 13 12 43 43 H 1.09004 * 111.00726 * 278.98769 * 14 13 12 44 44 H 1.09000 * 110.70983 * 206.14408 * 15 14 13 45 45 H 1.09000 * 110.86475 * 82.95836 * 15 14 13 46 46 H 1.09001 * 109.47188 * 305.22594 * 18 16 12 47 47 H 1.08994 * 109.47718 * 65.22862 * 18 16 12 48 48 H 0.97000 * 120.00141 * 5.00710 * 19 18 16 49 49 H 0.96999 * 119.99766 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 2.0184 -0.6906 1.1962 6 7 1.2783 -1.2171 2.1091 7 7 2.0400 -1.7373 3.0109 8 6 3.3018 -1.5227 2.6376 9 6 4.5420 -1.9502 3.3793 10 6 4.9555 -3.3237 2.9169 11 8 4.3066 -3.8989 2.0690 12 7 6.0463 -3.9127 3.4457 13 6 6.9799 -3.2909 4.4023 14 6 7.6339 -4.4788 5.1511 15 6 7.7694 -5.5259 4.0103 16 6 6.5024 -5.2816 3.1638 17 1 5.7272 -5.9955 3.4423 18 6 6.8309 -5.4246 1.6763 19 7 7.1639 -6.8205 1.3818 20 6 7.5935 -7.1725 0.1300 21 1 7.6864 -6.4210 -0.6401 22 6 7.9095 -8.4950 -0.1489 23 7 8.3219 -8.8334 -1.3522 24 14 7.7495 -9.7946 1.1833 25 1 6.3824 -10.3736 1.1483 26 1 8.7481 -10.8686 0.9498 27 1 7.9906 -9.1747 2.5111 28 7 3.2574 -0.8630 1.5062 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9564 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2493 36 1 1.6767 -0.2073 -2.1393 37 1 3.1301 -0.7216 -1.2490 38 1 4.3356 -1.9739 4.4493 39 1 5.3466 -1.2423 3.1800 40 1 7.7373 -2.7133 3.8723 41 1 6.4383 -2.6538 5.1014 42 1 8.6107 -4.2009 5.5472 43 1 6.9829 -4.8469 5.9442 44 1 7.7739 -6.5381 4.4146 45 1 8.6680 -5.3437 3.4209 46 1 5.9674 -5.1241 1.0830 47 1 7.6807 -4.7884 1.4291 48 1 7.0802 -7.4954 2.0734 49 1 8.5431 -9.7575 -1.5470 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671297536.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:12 Heat of formation + Delta-G solvation = 79.024770 kcal Electronic energy + Delta-G solvation = -29615.290292 eV Core-core repulsion = 25614.963264 eV Total energy + Delta-G solvation = -4000.327028 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -45.40929 -41.30261 -38.90453 -38.47509 -36.60656 -34.70893 -34.26588 -33.69846 -32.69488 -31.02458 -30.03072 -28.55647 -28.42386 -26.83828 -25.66634 -24.90440 -23.79307 -23.13521 -21.85856 -21.60990 -20.48915 -19.50126 -18.54243 -18.07740 -17.87305 -17.45998 -16.59367 -16.51453 -15.89980 -15.66963 -15.36098 -15.24459 -15.18758 -15.05822 -14.87464 -14.69113 -14.13500 -14.11399 -13.92190 -13.70662 -13.47585 -13.39234 -13.25563 -13.10061 -13.00939 -12.90906 -12.88189 -12.79721 -12.58548 -12.19029 -12.15927 -12.04664 -11.97583 -11.91749 -11.87951 -11.82937 -11.57211 -11.37792 -11.06070 -10.80918 -9.70926 -9.38119 -8.08651 -5.44103 0.19551 0.88917 1.02018 1.32506 1.39078 1.45756 1.52982 1.94275 2.43939 2.77514 3.12877 3.21772 3.41575 3.49312 3.56728 3.60442 3.64629 3.74777 3.86062 3.96363 4.16420 4.29542 4.30614 4.37444 4.42520 4.49081 4.50003 4.54749 4.57834 4.62996 4.69174 4.70558 4.74527 4.78412 4.86853 4.93402 4.98996 5.04579 5.08388 5.11251 5.19198 5.19569 5.32916 5.36983 5.44047 5.66280 6.13989 6.49172 6.99078 7.08720 7.31032 7.72595 7.96154 9.13164 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.012466 B = 0.002859 C = 0.002471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2245.649941 B = 9792.702308 C =11329.841118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.162 3.838 3 C -0.150 4.150 4 C -0.158 4.158 5 N -0.120 5.120 6 N -0.078 5.078 7 N -0.307 5.307 8 C 0.172 3.828 9 C -0.028 4.028 10 C 0.525 3.475 11 O -0.585 6.585 12 N -0.608 5.608 13 C 0.088 3.912 14 C -0.118 4.118 15 C -0.124 4.124 16 C 0.134 3.866 17 H 0.058 0.942 18 C 0.155 3.845 19 N -0.749 5.749 20 C -0.241 4.241 21 H 0.046 0.954 22 C -0.062 4.062 23 N -0.984 5.984 24 Si 0.960 3.040 25 H -0.283 1.283 26 H -0.287 1.287 27 H -0.241 1.241 28 N -0.307 5.307 29 H 0.074 0.926 30 H 0.125 0.875 31 H 0.057 0.943 32 H 0.066 0.934 33 H 0.124 0.876 34 H 0.067 0.933 35 H 0.044 0.956 36 H 0.128 0.872 37 H 0.059 0.941 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.113 0.887 43 H 0.088 0.912 44 H 0.082 0.918 45 H 0.073 0.927 46 H 0.002 0.998 47 H 0.025 0.975 48 H 0.368 0.632 49 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.901 25.736 14.274 31.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.083 3.917 3 C -0.208 4.208 4 C -0.216 4.216 5 N -0.036 5.036 6 N -0.070 5.070 7 N -0.177 5.177 8 C -0.111 4.111 9 C -0.070 4.070 10 C 0.313 3.687 11 O -0.464 6.464 12 N -0.342 5.342 13 C -0.032 4.032 14 C -0.156 4.156 15 C -0.162 4.162 16 C 0.029 3.971 17 H 0.076 0.924 18 C 0.027 3.973 19 N -0.396 5.396 20 C -0.372 4.372 21 H 0.064 0.936 22 C -0.254 4.254 23 N -0.634 5.634 24 Si 0.786 3.214 25 H -0.210 1.210 26 H -0.213 1.213 27 H -0.165 1.165 28 N -0.158 5.158 29 H 0.093 0.907 30 H 0.143 0.857 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.086 0.914 35 H 0.064 0.936 36 H 0.146 0.854 37 H 0.078 0.922 38 H 0.179 0.821 39 H 0.173 0.827 40 H 0.104 0.896 41 H 0.137 0.863 42 H 0.132 0.868 43 H 0.107 0.893 44 H 0.101 0.899 45 H 0.092 0.908 46 H 0.021 0.979 47 H 0.043 0.957 48 H 0.202 0.798 49 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -10.927 25.648 13.448 30.953 hybrid contribution 0.398 -1.652 -0.264 1.719 sum -10.529 23.997 13.184 29.334 Atomic orbital electron populations 1.22132 0.88548 1.04069 1.05855 1.21992 0.97748 0.93655 0.78307 1.22233 1.02596 0.90367 1.05593 1.22275 1.02309 1.00505 0.96540 1.50931 1.00650 1.33710 1.18293 1.78780 1.22301 1.09860 0.96074 1.75724 1.01510 1.19018 1.21430 1.25167 0.95406 0.98429 0.92071 1.20011 0.91649 0.93333 1.01967 1.20554 0.79317 0.87992 0.80793 1.90775 1.55117 1.66858 1.33674 1.48525 1.25510 1.14453 1.45669 1.22828 0.92433 0.96803 0.91147 1.22864 1.03165 0.93352 0.96194 1.22722 0.95088 1.01442 0.96946 1.21629 0.97405 0.84196 0.93862 0.92397 1.20943 0.96305 0.85095 0.94934 1.42451 1.81655 1.05301 1.10155 1.18952 1.35989 0.93698 0.88570 0.93620 1.25583 1.01265 0.99315 0.99217 1.69900 1.53068 1.18259 1.22137 0.85343 0.77405 0.78613 0.80070 1.20983 1.21341 1.16492 1.74512 1.04116 1.21040 1.16108 0.90727 0.85662 0.92363 0.91522 0.85756 0.91430 0.93645 0.85381 0.92159 0.82126 0.82681 0.89606 0.86272 0.86843 0.89331 0.89913 0.90819 0.97948 0.95710 0.79846 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 7.91 71.98 0.57 -1.20 16 2 C 0.16 2.65 1.30 3.61 0.00 2.65 16 3 C -0.15 -1.56 8.66 71.98 0.62 -0.94 16 4 C -0.16 -2.65 8.67 71.98 0.62 -2.02 16 5 N -0.12 -3.10 3.73 -152.39 -0.57 -3.67 16 6 N -0.08 -2.32 12.24 37.02 0.45 -1.87 16 7 N -0.31 -9.75 12.50 -51.26 -0.64 -10.39 16 8 C 0.17 4.92 6.86 138.55 0.95 5.87 16 9 C -0.03 -0.56 5.26 29.10 0.15 -0.41 16 10 C 0.53 16.08 7.66 87.66 0.67 16.75 16 11 O -0.58 -25.61 14.81 -3.03 -0.04 -25.65 16 12 N -0.61 -15.90 3.07 -788.07 -2.42 -18.31 16 13 C 0.09 1.22 6.73 86.85 0.58 1.80 16 14 C -0.12 -1.60 7.11 32.09 0.23 -1.37 16 15 C -0.12 -3.02 6.25 31.88 0.20 -2.82 16 16 C 0.13 4.39 2.94 45.34 0.13 4.52 16 17 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 18 C 0.15 6.94 5.66 86.38 0.49 7.43 16 19 N -0.75 -38.63 5.22 -343.46 -1.79 -40.43 16 20 C -0.24 -14.99 10.47 84.03 0.88 -14.11 16 21 H 0.05 3.15 8.06 -2.91 -0.02 3.13 16 22 C -0.06 -3.88 5.50 84.86 0.47 -3.41 16 23 N -0.98 -65.82 13.97 21.65 0.30 -65.51 16 24 Si 0.96 47.09 27.73 68.60 1.90 48.99 16 25 H -0.28 -13.86 7.11 99.48 0.71 -13.15 16 26 H -0.29 -13.90 7.11 99.48 0.71 -13.19 16 27 H -0.24 -10.31 6.52 99.48 0.65 -9.66 16 28 N -0.31 -8.76 11.83 -51.20 -0.61 -9.37 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 34 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.04 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.13 1.08 8.14 -2.38 -0.02 1.06 16 37 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 38 H 0.16 2.01 7.95 -2.39 -0.02 1.99 16 39 H 0.16 2.02 8.14 -2.39 -0.02 2.00 16 40 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.12 0.72 7.47 -2.39 -0.02 0.70 16 42 H 0.11 0.97 8.14 -2.38 -0.02 0.95 16 43 H 0.09 1.03 8.14 -2.38 -0.02 1.01 16 44 H 0.08 1.99 8.14 -2.39 -0.02 1.97 16 45 H 0.07 1.99 7.77 -2.39 -0.02 1.97 16 46 H 0.00 0.13 6.54 -2.39 -0.02 0.12 16 47 H 0.02 1.12 8.02 -2.39 -0.02 1.10 16 48 H 0.37 17.59 5.48 -92.71 -0.51 17.08 16 49 H 0.26 16.41 8.31 -92.71 -0.77 15.64 16 Total: -1.00 -94.76 398.55 3.55 -91.21 By element: Atomic # 1 Polarization: 21.87 SS G_CDS: 0.38 Total: 22.25 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 6.58 Total: 12.76 kcal Atomic # 7 Polarization: -144.28 SS G_CDS: -5.27 Total: -149.55 kcal Atomic # 8 Polarization: -25.61 SS G_CDS: -0.04 Total: -25.65 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 1.90 Total: 48.99 kcal Total: -94.76 3.55 -91.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671297536.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.234 kcal (2) G-P(sol) polarization free energy of solvation -94.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.210 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds