Wall clock time and date at job start Tue Mar 31 2020 19:58:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.52996 * 109.46963 * 240.00197 * 2 1 3 5 5 N 1.46499 * 109.47020 * 120.00415 * 2 1 3 6 6 N 1.28782 * 125.44766 * 239.99781 * 5 2 1 7 7 N 1.28997 * 108.72849 * 179.72835 * 6 5 2 8 8 C 1.33319 * 107.35157 * 0.42769 * 7 6 5 9 9 C 1.50695 * 126.55137 * 179.83618 * 8 7 6 10 10 C 1.50705 * 109.47072 * 269.69303 * 9 8 7 11 11 O 1.21279 * 119.99834 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99787 * 179.97438 * 10 9 8 13 13 C 1.47424 * 125.65093 * 4.89519 * 12 10 9 14 14 C 1.54909 * 104.83295 * 204.15986 * 13 12 10 15 15 C 1.55401 * 101.66694 * 323.07276 * 14 13 12 16 16 C 1.47025 * 125.64730 * 184.92591 * 12 10 9 17 17 H 1.09003 * 109.87655 * 59.34245 * 16 12 10 18 18 C 1.52999 * 109.88402 * 298.32911 * 16 12 10 19 19 N 1.46501 * 109.46871 * 175.28793 * 18 16 12 20 20 C 1.36932 * 119.99911 * 174.93334 * 19 18 16 21 21 H 1.08004 * 120.00090 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00486 * 180.27859 * 20 19 18 23 23 N 1.31624 * 119.99235 * 359.72695 * 22 20 19 24 24 Si 1.86799 * 120.00346 * 179.72628 * 22 20 19 25 25 H 1.48499 * 109.47227 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46863 * 119.99721 * 24 22 20 27 27 H 1.48498 * 109.46892 * 239.99794 * 24 22 20 28 28 N 1.28886 * 125.45349 * 59.99808 * 5 2 1 29 29 H 1.09010 * 109.47143 * 299.99974 * 1 2 3 30 30 H 1.09002 * 109.47584 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.47628 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46740 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47287 * 300.00074 * 3 2 1 34 34 H 1.08998 * 109.46942 * 60.00458 * 3 2 1 35 35 H 1.09005 * 109.47142 * 300.00452 * 4 2 1 36 36 H 1.09002 * 109.46943 * 59.99641 * 4 2 1 37 37 H 1.08992 * 109.47211 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.47591 * 149.69010 * 9 8 7 39 39 H 1.09010 * 109.46850 * 29.68735 * 9 8 7 40 40 H 1.08999 * 110.36683 * 322.99724 * 13 12 10 41 41 H 1.09003 * 110.36725 * 85.31848 * 13 12 10 42 42 H 1.08996 * 111.00477 * 81.06046 * 14 13 12 43 43 H 1.09003 * 111.00259 * 204.91469 * 14 13 12 44 44 H 1.08997 * 110.69691 * 277.05545 * 15 14 13 45 45 H 1.08996 * 110.85632 * 153.69733 * 15 14 13 46 46 H 1.09003 * 109.47174 * 55.29441 * 18 16 12 47 47 H 1.08996 * 109.47200 * 295.29308 * 18 16 12 48 48 H 0.96999 * 120.00018 * 354.93911 * 19 18 16 49 49 H 0.97001 * 119.99377 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1961 6 7 2.7619 -0.1686 2.1088 7 7 2.9940 -1.0586 3.0133 8 6 2.3751 -2.1781 2.6375 9 6 2.3652 -3.4901 3.3787 10 6 3.5220 -4.3376 2.9154 11 8 4.2796 -3.9177 2.0665 12 7 3.7146 -5.5622 3.4443 13 6 2.8189 -6.2347 4.4030 14 6 3.7242 -7.2463 5.1490 15 6 4.6670 -7.7241 4.0098 16 6 4.8531 -6.4484 3.1614 17 1 5.7849 -5.9537 3.4356 18 6 4.8740 -6.8104 1.6750 19 7 6.0726 -7.6000 1.3816 20 6 6.2553 -8.1283 0.1316 21 1 5.5160 -7.9626 -0.6381 22 6 7.3882 -8.8814 -0.1450 23 7 8.2893 -9.0830 0.7930 24 14 7.6337 -9.6085 -1.8480 25 1 6.4859 -9.2383 -2.7145 26 1 8.8892 -9.0772 -2.4368 27 1 7.7214 -11.0874 -1.7468 28 7 1.7725 -1.9180 1.5034 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6765 -0.2073 -2.1392 37 1 3.1299 -0.7216 -1.2491 38 1 1.4294 -4.0127 3.1801 39 1 2.4571 -3.3036 4.4488 40 1 2.4009 -5.5114 5.1032 41 1 2.0213 -6.7571 3.8747 42 1 4.2895 -6.7548 5.9408 43 1 3.1388 -8.0756 5.5461 44 1 4.1939 -8.5116 3.4231 45 1 5.6218 -8.0622 4.4123 46 1 4.8852 -5.8978 1.0790 47 1 3.9860 -7.3932 1.4305 48 1 6.7367 -7.7486 2.0728 49 1 9.0811 -9.6089 0.5996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671297547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:18 Heat of formation + Delta-G solvation = 104.631397 kcal Electronic energy + Delta-G solvation = -29548.374974 eV Core-core repulsion = 25549.158332 eV Total energy + Delta-G solvation = -3999.216642 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.37536 -40.04194 -37.98050 -37.33154 -34.49110 -33.60727 -33.25330 -31.75408 -31.26268 -29.56555 -28.51092 -27.97777 -27.81067 -25.06380 -24.67672 -23.57976 -22.38076 -21.93991 -20.82125 -20.54036 -18.91379 -17.59976 -17.25334 -17.03136 -16.60266 -16.29277 -15.43157 -14.78353 -14.64819 -14.51019 -14.41297 -14.26390 -13.78309 -13.63837 -13.42081 -13.25230 -13.11471 -12.92263 -12.81611 -12.74950 -12.70814 -12.28333 -12.26980 -12.16398 -11.98104 -11.88797 -11.47958 -11.40561 -11.13951 -10.93225 -10.88756 -10.85092 -10.81495 -10.51620 -10.40844 -10.27480 -9.98431 -9.73543 -9.53684 -8.78744 -8.43111 -6.83733 -5.70302 -2.97965 1.23658 1.73770 2.09519 2.74868 3.08592 3.47523 3.53166 3.55614 3.67979 3.96772 4.10573 4.21400 4.43432 4.47725 4.62324 4.67812 4.92667 4.95432 4.97503 5.02973 5.07250 5.07974 5.13125 5.21317 5.23765 5.33645 5.40262 5.43422 5.49248 5.58351 5.60745 5.64365 5.66381 5.74225 5.84225 5.87302 5.95764 6.07865 6.12422 6.18981 6.22920 6.46142 6.59281 6.86601 7.08553 7.66236 7.77551 8.30339 8.37838 8.48990 9.59722 10.17046 10.52725 11.52970 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010903 B = 0.002885 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.570259 B = 9704.422355 C =11663.155045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.179 3.821 3 C -0.152 4.152 4 C -0.160 4.160 5 N -0.130 5.130 6 N -0.063 5.063 7 N -0.277 5.277 8 C 0.186 3.814 9 C -0.038 4.038 10 C 0.532 3.468 11 O -0.518 6.518 12 N -0.611 5.611 13 C 0.097 3.903 14 C -0.135 4.135 15 C -0.119 4.119 16 C 0.132 3.868 17 H 0.076 0.924 18 C 0.146 3.854 19 N -0.729 5.729 20 C -0.232 4.232 21 H 0.069 0.931 22 C -0.016 4.016 23 N -0.935 5.935 24 Si 0.907 3.093 25 H -0.281 1.281 26 H -0.292 1.292 27 H -0.292 1.292 28 N -0.293 5.293 29 H 0.066 0.934 30 H 0.089 0.911 31 H 0.077 0.923 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.089 0.911 37 H 0.070 0.930 38 H 0.120 0.880 39 H 0.123 0.877 40 H 0.075 0.925 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.084 0.916 46 H 0.034 0.966 47 H 0.020 0.980 48 H 0.383 0.617 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.513 16.892 6.262 27.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.098 3.902 3 C -0.210 4.210 4 C -0.219 4.219 5 N -0.044 5.044 6 N -0.056 5.056 7 N -0.148 5.148 8 C -0.097 4.097 9 C -0.081 4.081 10 C 0.318 3.682 11 O -0.393 6.393 12 N -0.347 5.347 13 C -0.026 4.026 14 C -0.173 4.173 15 C -0.158 4.158 16 C 0.029 3.971 17 H 0.094 0.906 18 C 0.017 3.983 19 N -0.373 5.373 20 C -0.363 4.363 21 H 0.087 0.913 22 C -0.212 4.212 23 N -0.584 5.584 24 Si 0.738 3.262 25 H -0.206 1.206 26 H -0.219 1.219 27 H -0.219 1.219 28 N -0.143 5.143 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.096 0.904 32 H 0.095 0.905 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.097 0.903 36 H 0.107 0.893 37 H 0.089 0.911 38 H 0.138 0.862 39 H 0.141 0.859 40 H 0.093 0.907 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.101 0.899 44 H 0.101 0.899 45 H 0.103 0.897 46 H 0.051 0.949 47 H 0.038 0.962 48 H 0.216 0.784 49 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -20.019 17.840 5.428 27.359 hybrid contribution 0.363 -1.070 -0.624 1.290 sum -19.656 16.771 4.804 26.281 Atomic orbital electron populations 1.22221 0.90967 1.04494 1.03851 1.21373 0.95980 0.92997 0.79846 1.22084 1.03352 0.91535 1.04075 1.22246 1.02851 1.02007 0.94782 1.50404 1.30320 1.05566 1.18065 1.78872 1.08734 1.22473 0.95495 1.75788 1.19878 0.98883 1.20232 1.24577 0.96585 0.96898 0.91662 1.19832 1.00097 0.87673 1.00519 1.19704 0.86044 0.80567 0.81901 1.90793 1.46655 1.71206 1.30637 1.48447 1.25330 1.15661 1.45229 1.22384 0.93373 0.95534 0.91296 1.22840 0.98004 0.98521 0.97906 1.22706 1.00659 0.96703 0.95684 1.21829 0.88538 0.89539 0.97222 0.90638 1.20975 0.90858 0.95036 0.91389 1.42212 1.21233 1.61667 1.12209 1.19256 1.03672 1.24517 0.88848 0.91285 1.24718 0.97266 1.01359 0.97810 1.69673 1.11636 1.44939 1.32148 0.86110 0.77530 0.78564 0.83997 1.20619 1.21902 1.21904 1.74538 1.24463 0.99283 1.16026 0.91523 0.89225 0.90403 0.90510 0.89316 0.90698 0.90288 0.89268 0.91137 0.86219 0.85870 0.90685 0.91080 0.90726 0.89946 0.89887 0.89735 0.94850 0.96219 0.78360 0.93649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.95 8.66 37.16 0.32 -0.63 16 2 C 0.18 1.51 1.30 -131.82 -0.17 1.34 16 3 C -0.15 -0.99 7.91 37.16 0.29 -0.70 16 4 C -0.16 -1.33 8.66 37.16 0.32 -1.00 16 5 N -0.13 -1.66 3.73 0.48 0.00 -1.66 16 6 N -0.06 -0.93 12.24 60.35 0.74 -0.19 16 7 N -0.28 -4.42 12.50 32.44 0.41 -4.01 16 8 C 0.19 2.72 6.86 -156.63 -1.07 1.65 16 9 C -0.04 -0.44 5.26 -29.04 -0.15 -0.60 16 10 C 0.53 8.56 7.66 -10.98 -0.08 8.48 16 11 O -0.52 -11.10 14.83 5.56 0.08 -11.02 16 12 N -0.61 -8.94 3.06 -163.01 -0.50 -9.44 16 13 C 0.10 0.95 6.74 -2.53 -0.02 0.94 16 14 C -0.13 -1.35 7.09 -24.45 -0.17 -1.52 16 15 C -0.12 -1.74 6.23 -24.76 -0.15 -1.89 16 16 C 0.13 2.33 2.94 -66.95 -0.20 2.13 16 17 H 0.08 1.48 8.14 -51.93 -0.42 1.05 16 18 C 0.15 3.28 5.65 -4.04 -0.02 3.25 16 19 N -0.73 -19.50 5.41 -59.91 -0.32 -19.82 16 20 C -0.23 -6.82 9.99 -15.06 -0.15 -6.97 16 21 H 0.07 2.01 7.83 -52.48 -0.41 1.60 16 22 C -0.02 -0.48 5.50 -17.43 -0.10 -0.57 16 23 N -0.93 -29.01 13.06 55.49 0.72 -28.28 16 24 Si 0.91 23.22 29.55 -169.99 -5.02 18.20 16 25 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 27 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 28 N -0.29 -4.18 11.83 32.46 0.38 -3.79 16 29 H 0.07 0.41 8.14 -51.92 -0.42 -0.01 16 30 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 34 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 39 H 0.12 1.07 7.95 -51.92 -0.41 0.66 16 40 H 0.07 0.51 7.47 -51.93 -0.39 0.12 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.08 1.30 7.77 -51.93 -0.40 0.90 16 45 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 46 H 0.03 0.85 6.57 -51.93 -0.34 0.51 16 47 H 0.02 0.44 8.03 -51.93 -0.42 0.03 16 48 H 0.38 10.55 7.60 -40.82 -0.31 10.24 16 49 H 0.25 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 401.65 15.07 6.05 6.05 Total: -1.00 -38.51 401.65 -6.97 -45.48 By element: Atomic # 1 Polarization: 12.75 SS G_CDS: -8.16 Total: 4.59 kcal Atomic # 6 Polarization: 5.26 SS G_CDS: -1.36 Total: 3.90 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: 1.43 Total: -67.20 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -38.51 -6.97 -45.48 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671297547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.112 kcal (2) G-P(sol) polarization free energy of solvation -38.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 111.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.631 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds