Wall clock time and date at job start Tue Mar 31 2020 19:58:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.52996 * 109.46963 * 240.00197 * 2 1 3 5 5 N 1.46499 * 109.47020 * 120.00415 * 2 1 3 6 6 N 1.28782 * 125.44766 * 239.99781 * 5 2 1 7 7 N 1.28997 * 108.72849 * 179.72835 * 6 5 2 8 8 C 1.33319 * 107.35157 * 0.42769 * 7 6 5 9 9 C 1.50695 * 126.55137 * 179.83618 * 8 7 6 10 10 C 1.50705 * 109.47072 * 269.69303 * 9 8 7 11 11 O 1.21279 * 119.99834 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99787 * 179.97438 * 10 9 8 13 13 C 1.47424 * 125.65093 * 4.89519 * 12 10 9 14 14 C 1.54909 * 104.83295 * 204.15986 * 13 12 10 15 15 C 1.55401 * 101.66694 * 323.07276 * 14 13 12 16 16 C 1.47025 * 125.64730 * 184.92591 * 12 10 9 17 17 H 1.09003 * 109.87655 * 59.34245 * 16 12 10 18 18 C 1.52999 * 109.88402 * 298.32911 * 16 12 10 19 19 N 1.46501 * 109.46871 * 175.28793 * 18 16 12 20 20 C 1.36932 * 119.99911 * 174.93334 * 19 18 16 21 21 H 1.08004 * 120.00090 * 0.02562 * 20 19 18 22 22 C 1.38814 * 120.00486 * 180.27859 * 20 19 18 23 23 N 1.31624 * 119.99235 * 359.72695 * 22 20 19 24 24 Si 1.86799 * 120.00346 * 179.72628 * 22 20 19 25 25 H 1.48499 * 109.47227 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46863 * 119.99721 * 24 22 20 27 27 H 1.48498 * 109.46892 * 239.99794 * 24 22 20 28 28 N 1.28886 * 125.45349 * 59.99808 * 5 2 1 29 29 H 1.09010 * 109.47143 * 299.99974 * 1 2 3 30 30 H 1.09002 * 109.47584 * 59.99770 * 1 2 3 31 31 H 1.09000 * 109.47628 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46740 * 179.97438 * 3 2 1 33 33 H 1.08998 * 109.47287 * 300.00074 * 3 2 1 34 34 H 1.08998 * 109.46942 * 60.00458 * 3 2 1 35 35 H 1.09005 * 109.47142 * 300.00452 * 4 2 1 36 36 H 1.09002 * 109.46943 * 59.99641 * 4 2 1 37 37 H 1.08992 * 109.47211 * 180.02562 * 4 2 1 38 38 H 1.09000 * 109.47591 * 149.69010 * 9 8 7 39 39 H 1.09010 * 109.46850 * 29.68735 * 9 8 7 40 40 H 1.08999 * 110.36683 * 322.99724 * 13 12 10 41 41 H 1.09003 * 110.36725 * 85.31848 * 13 12 10 42 42 H 1.08996 * 111.00477 * 81.06046 * 14 13 12 43 43 H 1.09003 * 111.00259 * 204.91469 * 14 13 12 44 44 H 1.08997 * 110.69691 * 277.05545 * 15 14 13 45 45 H 1.08996 * 110.85632 * 153.69733 * 15 14 13 46 46 H 1.09003 * 109.47174 * 55.29441 * 18 16 12 47 47 H 1.08996 * 109.47200 * 295.29308 * 18 16 12 48 48 H 0.96999 * 120.00018 * 354.93911 * 19 18 16 49 49 H 0.97001 * 119.99377 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2492 5 7 2.0183 -0.6907 1.1961 6 7 2.7619 -0.1686 2.1088 7 7 2.9940 -1.0586 3.0133 8 6 2.3751 -2.1781 2.6375 9 6 2.3652 -3.4901 3.3787 10 6 3.5220 -4.3376 2.9154 11 8 4.2796 -3.9177 2.0665 12 7 3.7146 -5.5622 3.4443 13 6 2.8189 -6.2347 4.4030 14 6 3.7242 -7.2463 5.1490 15 6 4.6670 -7.7241 4.0098 16 6 4.8531 -6.4484 3.1614 17 1 5.7849 -5.9537 3.4356 18 6 4.8740 -6.8104 1.6750 19 7 6.0726 -7.6000 1.3816 20 6 6.2553 -8.1283 0.1316 21 1 5.5160 -7.9626 -0.6381 22 6 7.3882 -8.8814 -0.1450 23 7 8.2893 -9.0830 0.7930 24 14 7.6337 -9.6085 -1.8480 25 1 6.4859 -9.2383 -2.7145 26 1 8.8892 -9.0772 -2.4368 27 1 7.7214 -11.0874 -1.7468 28 7 1.7725 -1.9180 1.5034 29 1 -0.3634 0.5139 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 3.1300 1.4424 0.0005 33 1 1.6767 1.9563 -0.8900 34 1 1.6767 1.9563 0.8900 35 1 1.6765 -1.7489 -1.2493 36 1 1.6765 -0.2073 -2.1392 37 1 3.1299 -0.7216 -1.2491 38 1 1.4294 -4.0127 3.1801 39 1 2.4571 -3.3036 4.4488 40 1 2.4009 -5.5114 5.1032 41 1 2.0213 -6.7571 3.8747 42 1 4.2895 -6.7548 5.9408 43 1 3.1388 -8.0756 5.5461 44 1 4.1939 -8.5116 3.4231 45 1 5.6218 -8.0622 4.4123 46 1 4.8852 -5.8978 1.0790 47 1 3.9860 -7.3932 1.4305 48 1 6.7367 -7.7486 2.0728 49 1 9.0811 -9.6089 0.5996 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671297547.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:58:16 Heat of formation + Delta-G solvation = 76.084761 kcal Electronic energy + Delta-G solvation = -29549.612849 eV Core-core repulsion = 25549.158332 eV Total energy + Delta-G solvation = -4000.454517 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.40484 -41.28023 -38.88080 -38.46001 -36.45200 -34.70330 -34.25709 -33.48430 -32.64342 -30.78956 -29.87914 -28.55055 -28.41866 -26.75258 -25.66514 -25.05942 -23.95058 -23.10626 -21.83340 -21.59127 -20.26435 -19.18861 -18.49315 -18.07021 -17.84205 -17.47472 -16.63504 -16.46045 -15.80482 -15.67231 -15.30320 -15.20816 -15.08052 -15.05252 -14.96801 -14.70881 -14.12187 -14.03400 -13.75897 -13.57539 -13.46145 -13.31583 -13.25103 -12.99547 -12.94219 -12.89193 -12.87397 -12.75405 -12.58162 -12.18650 -12.18513 -12.02818 -11.97008 -11.93831 -11.87526 -11.79652 -11.56020 -11.36661 -11.02718 -10.79271 -9.69598 -9.07154 -8.00786 -5.30758 0.19874 0.89282 1.02459 1.42032 1.44443 1.53776 1.54847 1.95588 2.52186 2.77927 3.13420 3.31506 3.44710 3.49902 3.57393 3.64794 3.68636 3.85830 3.94440 4.11841 4.17158 4.31656 4.35152 4.38742 4.43052 4.49413 4.50498 4.55866 4.58271 4.63145 4.69481 4.70923 4.74819 4.79046 4.87475 4.96678 4.99338 5.06860 5.08911 5.14674 5.19341 5.19945 5.33530 5.36456 5.42191 5.47034 6.20837 6.51549 7.09356 7.27083 7.31368 7.98542 8.26241 9.22792 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.010903 B = 0.002885 C = 0.002400 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2567.570259 B = 9704.422355 C =11663.155045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.162 3.838 3 C -0.148 4.148 4 C -0.158 4.158 5 N -0.120 5.120 6 N -0.078 5.078 7 N -0.308 5.308 8 C 0.173 3.827 9 C -0.027 4.027 10 C 0.525 3.475 11 O -0.586 6.586 12 N -0.608 5.608 13 C 0.090 3.910 14 C -0.119 4.119 15 C -0.117 4.117 16 C 0.138 3.862 17 H 0.047 0.953 18 C 0.154 3.846 19 N -0.737 5.737 20 C -0.250 4.250 21 H 0.066 0.934 22 C -0.071 4.071 23 N -0.966 5.966 24 Si 0.977 3.023 25 H -0.270 1.270 26 H -0.292 1.292 27 H -0.284 1.284 28 N -0.306 5.306 29 H 0.066 0.934 30 H 0.124 0.876 31 H 0.066 0.934 32 H 0.057 0.943 33 H 0.125 0.875 34 H 0.073 0.927 35 H 0.060 0.940 36 H 0.128 0.872 37 H 0.044 0.956 38 H 0.157 0.843 39 H 0.160 0.840 40 H 0.120 0.880 41 H 0.088 0.912 42 H 0.085 0.915 43 H 0.113 0.887 44 H 0.070 0.930 45 H 0.074 0.926 46 H -0.003 1.003 47 H 0.022 0.978 48 H 0.376 0.624 49 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.466 17.063 6.746 29.788 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.083 3.917 3 C -0.206 4.206 4 C -0.216 4.216 5 N -0.036 5.036 6 N -0.070 5.070 7 N -0.178 5.178 8 C -0.110 4.110 9 C -0.069 4.069 10 C 0.313 3.687 11 O -0.466 6.466 12 N -0.341 5.341 13 C -0.030 4.030 14 C -0.157 4.157 15 C -0.155 4.155 16 C 0.033 3.967 17 H 0.066 0.934 18 C 0.026 3.974 19 N -0.380 5.380 20 C -0.382 4.382 21 H 0.084 0.916 22 C -0.264 4.264 23 N -0.616 5.616 24 Si 0.805 3.195 25 H -0.195 1.195 26 H -0.219 1.219 27 H -0.210 1.210 28 N -0.157 5.157 29 H 0.085 0.915 30 H 0.143 0.857 31 H 0.085 0.915 32 H 0.076 0.924 33 H 0.144 0.856 34 H 0.092 0.908 35 H 0.079 0.921 36 H 0.146 0.854 37 H 0.063 0.937 38 H 0.175 0.825 39 H 0.178 0.822 40 H 0.138 0.862 41 H 0.106 0.894 42 H 0.104 0.896 43 H 0.132 0.868 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.015 0.985 47 H 0.040 0.960 48 H 0.208 0.792 49 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -23.030 18.011 5.956 29.837 hybrid contribution 1.278 -1.076 -0.859 1.879 sum -21.752 16.935 5.097 28.034 Atomic orbital electron populations 1.22234 0.88627 1.04334 1.05587 1.22000 0.97788 0.93614 0.78335 1.22132 1.02180 0.90469 1.05848 1.22273 1.01216 1.01616 0.96487 1.50945 1.29015 1.05246 1.18363 1.78780 1.09483 1.22710 0.96069 1.75730 1.20933 0.99723 1.21379 1.25144 0.96298 0.97640 0.91951 1.20008 0.99261 0.85717 1.01938 1.20572 0.86383 0.80885 0.80848 1.90767 1.49305 1.72721 1.33763 1.48549 1.25016 1.15017 1.45540 1.22827 0.92685 0.96430 0.91107 1.22865 0.97093 0.99490 0.96229 1.22612 1.01554 0.94477 0.96888 1.21539 0.89191 0.91583 0.94355 0.93436 1.20941 0.89204 0.92646 0.94592 1.42340 1.22392 1.61897 1.11384 1.19574 1.03930 1.24791 0.89861 0.91575 1.25590 0.96921 1.01941 1.01918 1.69823 1.12027 1.45610 1.34172 0.85032 0.77432 0.77787 0.79235 1.19477 1.21898 1.21002 1.74504 1.25060 1.00033 1.16060 0.91485 0.85721 0.91481 0.92387 0.85623 0.90779 0.92080 0.85353 0.93651 0.82545 0.82234 0.86182 0.89381 0.89613 0.86824 0.91113 0.90712 0.98462 0.95989 0.79208 0.93726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.52 8.66 71.98 0.62 -0.90 16 2 C 0.16 2.61 1.30 3.60 0.00 2.61 16 3 C -0.15 -1.76 7.91 71.98 0.57 -1.19 16 4 C -0.16 -2.56 8.66 71.98 0.62 -1.93 16 5 N -0.12 -3.10 3.73 -152.40 -0.57 -3.67 16 6 N -0.08 -2.36 12.24 37.02 0.45 -1.91 16 7 N -0.31 -9.98 12.50 -51.27 -0.64 -10.62 16 8 C 0.17 5.03 6.86 138.55 0.95 5.98 16 9 C -0.03 -0.58 5.26 29.10 0.15 -0.43 16 10 C 0.52 16.86 7.66 87.66 0.67 17.53 16 11 O -0.59 -26.53 14.83 -3.03 -0.04 -26.57 16 12 N -0.61 -17.23 3.06 -788.03 -2.42 -19.64 16 13 C 0.09 1.42 6.74 86.86 0.59 2.00 16 14 C -0.12 -1.97 7.09 32.07 0.23 -1.75 16 15 C -0.12 -3.35 6.23 31.87 0.20 -3.16 16 16 C 0.14 5.03 2.94 45.34 0.13 5.16 16 17 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 18 C 0.15 7.28 5.65 86.38 0.49 7.77 16 19 N -0.74 -41.28 5.41 -343.45 -1.86 -43.14 16 20 C -0.25 -15.17 9.99 84.03 0.84 -14.33 16 21 H 0.07 3.96 7.83 -2.91 -0.02 3.94 16 22 C -0.07 -4.31 5.50 84.86 0.47 -3.84 16 23 N -0.97 -61.21 13.06 21.65 0.28 -60.93 16 24 Si 0.98 48.33 29.55 68.60 2.03 50.36 16 25 H -0.27 -12.76 7.11 99.48 0.71 -12.05 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 27 H -0.28 -13.59 7.11 99.48 0.71 -12.89 16 28 N -0.31 -8.77 11.83 -51.20 -0.61 -9.37 16 29 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 30 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.06 1.21 8.14 -2.38 -0.02 1.19 16 36 H 0.13 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.16 2.13 8.14 -2.39 -0.02 2.11 16 39 H 0.16 2.18 7.95 -2.38 -0.02 2.16 16 40 H 0.12 0.92 7.47 -2.39 -0.02 0.90 16 41 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 42 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.11 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.07 2.20 7.77 -2.39 -0.02 2.18 16 45 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 46 H 0.00 -0.14 6.57 -2.39 -0.02 -0.15 16 47 H 0.02 1.03 8.03 -2.39 -0.02 1.01 16 48 H 0.38 21.77 7.60 -92.71 -0.70 21.07 16 49 H 0.25 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -90.98 401.65 3.41 -87.57 By element: Atomic # 1 Polarization: 24.13 SS G_CDS: 0.24 Total: 24.37 kcal Atomic # 6 Polarization: 7.01 SS G_CDS: 6.54 Total: 13.54 kcal Atomic # 7 Polarization: -143.92 SS G_CDS: -5.35 Total: -149.27 kcal Atomic # 8 Polarization: -26.53 SS G_CDS: -0.04 Total: -26.57 kcal Atomic # 14 Polarization: 48.33 SS G_CDS: 2.03 Total: 50.36 kcal Total: -90.98 3.41 -87.57 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671297547.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.653 kcal (2) G-P(sol) polarization free energy of solvation -90.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.568 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds