Wall clock time and date at job start Tue Mar 31 2020 19:48:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47474 * 2 1 4 4 C 1.50707 * 109.47117 * 119.99574 * 2 1 3 5 5 N 1.31071 * 126.65845 * 300.04493 * 4 2 1 6 6 N 1.28846 * 107.98643 * 179.97438 * 5 4 2 7 7 N 1.28736 * 109.40031 * 359.73055 * 6 5 4 8 8 N 1.29024 * 108.80410 * 0.43919 * 7 6 5 9 9 C 1.46505 * 126.43348 * 179.83126 * 8 7 6 10 10 C 1.50703 * 109.47231 * 269.68926 * 9 8 7 11 11 O 1.21277 * 119.99992 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.48317 * 127.77054 * 359.93266 * 12 10 9 14 14 C 1.54391 * 104.53792 * 219.51516 * 13 12 10 15 15 C 1.54283 * 105.05272 * 336.26252 * 14 13 12 16 16 C 1.52999 * 110.34306 * 118.81938 * 15 14 13 17 17 C 1.53006 * 110.34271 * 241.07368 * 15 14 13 18 18 N 1.46498 * 109.46893 * 298.54752 * 17 15 14 19 19 C 1.36938 * 119.99658 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00208 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99822 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00032 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99997 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46991 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46805 * 119.99532 * 23 21 19 26 26 H 1.48493 * 109.47556 * 240.00115 * 23 21 19 27 27 C 1.48146 * 127.83810 * 180.02562 * 12 10 9 28 28 H 1.09006 * 109.46994 * 300.00319 * 1 2 3 29 29 H 1.09004 * 109.46951 * 60.00232 * 1 2 3 30 30 H 1.09007 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47159 * 239.99578 * 2 1 3 32 32 H 1.09004 * 109.46842 * 299.99835 * 3 2 1 33 33 H 1.08997 * 109.47271 * 59.99647 * 3 2 1 34 34 H 1.08996 * 109.47279 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46978 * 149.69055 * 9 8 7 36 36 H 1.08998 * 109.47125 * 29.68996 * 9 8 7 37 37 H 1.09000 * 110.38040 * 100.79235 * 13 12 10 38 38 H 1.08992 * 110.50701 * 338.30692 * 13 12 10 39 39 H 1.09002 * 110.34401 * 217.33666 * 14 13 12 40 40 H 1.09000 * 110.34137 * 95.18654 * 14 13 12 41 41 H 1.08998 * 109.47408 * 61.45221 * 16 15 14 42 42 H 1.08999 * 109.47461 * 181.45670 * 16 15 14 43 43 H 1.09004 * 109.47274 * 301.44862 * 16 15 14 44 44 H 1.09004 * 109.46749 * 58.54455 * 17 15 14 45 45 H 1.09000 * 109.46913 * 178.54527 * 17 15 14 46 46 H 0.96993 * 120.00249 * 359.97438 * 18 17 15 47 47 H 0.97007 * 119.99686 * 180.02562 * 22 21 19 48 48 H 1.09000 * 110.40949 * 21.63687 * 27 12 10 49 49 H 1.08998 * 110.40973 * 259.20254 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7968 -0.3787 2.4766 6 7 2.3980 -1.2291 3.2351 7 7 3.0061 -2.0980 2.5054 8 7 2.8093 -1.8089 1.2634 9 6 3.3288 -2.5422 0.1064 10 6 4.6669 -1.9731 -0.2895 11 8 5.1402 -1.0466 0.3336 12 7 5.3376 -2.4938 -1.3361 13 6 4.9251 -3.6184 -2.2107 14 6 6.2259 -4.4112 -2.4619 15 6 7.3644 -3.3944 -2.2382 16 6 8.2657 -3.8495 -1.0886 17 6 8.1820 -3.2208 -3.5198 18 7 8.7898 -4.5017 -3.8885 19 6 9.5716 -4.5911 -5.0092 20 1 9.7398 -3.7175 -5.6214 21 6 10.1472 -5.8050 -5.3589 22 7 9.9418 -6.8698 -4.6130 23 14 11.2131 -5.9272 -6.8880 24 1 11.2870 -4.5986 -7.5474 25 1 12.5792 -6.3659 -6.5053 26 1 10.6211 -6.9138 -7.8267 27 6 6.6534 -2.0741 -1.8720 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 2.6325 -2.4468 -0.7268 36 1 3.4439 -3.5948 0.3652 37 1 4.5228 -3.2406 -3.1506 38 1 4.1897 -4.2448 -1.7059 39 1 6.2490 -4.7871 -3.4849 40 1 6.3097 -5.2358 -1.7541 41 1 8.7187 -4.8085 -1.3398 42 1 9.0489 -3.1091 -0.9259 43 1 7.6714 -3.9550 -0.1809 44 1 7.5287 -2.8836 -4.3246 45 1 8.9653 -2.4813 -3.3536 46 1 8.6385 -5.2864 -3.3388 47 1 10.3443 -7.7180 -4.8572 48 1 7.2194 -1.5361 -1.1116 49 1 6.5225 -1.4544 -2.7591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671790278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:23 Heat of formation + Delta-G solvation = 93.392474 kcal Electronic energy + Delta-G solvation = -29661.398890 eV Core-core repulsion = 25661.694892 eV Total energy + Delta-G solvation = -3999.703998 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -44.43043 -40.51033 -38.48257 -36.55002 -35.62826 -35.04332 -32.91812 -31.74588 -30.52340 -29.75680 -29.47978 -27.66524 -26.66359 -25.54572 -24.71415 -23.72156 -23.17862 -22.53736 -21.11974 -19.93803 -18.98240 -18.22604 -17.61459 -17.27784 -16.70229 -16.35283 -15.97452 -15.40125 -15.18978 -14.85358 -14.60783 -14.09788 -13.86126 -13.70472 -13.68407 -13.55122 -13.19752 -12.89508 -12.85256 -12.65216 -12.57914 -12.41189 -12.31318 -12.09109 -11.86678 -11.80263 -11.63190 -11.58382 -11.31427 -11.22158 -11.11019 -10.91511 -10.73502 -10.57238 -10.35668 -10.32373 -10.15430 -10.01496 -9.75966 -9.03850 -8.97101 -7.01663 -5.85843 -3.14523 0.91787 1.49067 2.03061 2.05659 2.54966 3.37059 3.43412 3.45216 3.50244 3.75454 3.78354 4.03943 4.27818 4.47602 4.49526 4.52504 4.61512 4.66249 4.75732 4.88713 5.09415 5.13329 5.17518 5.20488 5.28688 5.29843 5.37051 5.41974 5.46439 5.48766 5.58385 5.65152 5.71408 5.72785 5.75984 5.80851 5.85163 6.00592 6.06054 6.12914 6.30335 6.42797 6.54153 6.66114 6.70241 7.11861 7.59695 7.62639 8.33105 8.39954 9.45055 10.01154 10.35941 11.36906 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.002175 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.645930 B =12873.365248 C =13205.693608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.202 3.798 5 N -0.300 5.300 6 N -0.073 5.073 7 N -0.084 5.084 8 N -0.295 5.295 9 C 0.097 3.903 10 C 0.521 3.479 11 O -0.524 6.524 12 N -0.612 5.612 13 C 0.093 3.907 14 C -0.125 4.125 15 C -0.079 4.079 16 C -0.131 4.131 17 C 0.167 3.833 18 N -0.729 5.729 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.280 1.280 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.118 3.882 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.071 0.929 34 H 0.062 0.938 35 H 0.138 0.862 36 H 0.143 0.857 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.044 0.956 44 H 0.022 0.978 45 H 0.022 0.978 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.084 0.916 49 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.936 10.296 5.544 23.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.076 4.076 5 N -0.149 5.149 6 N -0.067 5.067 7 N -0.070 5.070 8 N -0.095 5.095 9 C -0.029 4.029 10 C 0.306 3.694 11 O -0.400 6.400 12 N -0.346 5.346 13 C -0.029 4.029 14 C -0.163 4.163 15 C -0.080 4.080 16 C -0.189 4.189 17 C 0.039 3.961 18 N -0.374 5.374 19 C -0.371 4.371 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.004 4.004 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.090 0.910 34 H 0.081 0.919 35 H 0.156 0.844 36 H 0.161 0.839 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.116 0.884 40 H 0.093 0.907 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.040 0.960 45 H 0.039 0.961 46 H 0.220 0.780 47 H 0.065 0.935 48 H 0.102 0.898 49 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.530 10.715 7.271 23.433 hybrid contribution 0.802 -0.673 -1.708 2.003 sum -18.728 10.042 5.563 21.966 Atomic orbital electron populations 1.21856 0.91853 1.02724 1.03767 1.19798 0.97367 0.96614 0.89480 1.21830 1.01991 0.92978 1.03438 1.26091 0.94775 0.88700 0.98024 1.74950 1.20651 1.20963 0.98302 1.78610 1.06849 0.98823 1.22377 1.78915 1.19037 1.21836 0.87163 1.47876 1.33885 1.20903 1.06860 1.21958 0.96007 0.98719 0.86263 1.19740 0.85943 0.83726 0.80014 1.90826 1.68424 1.28545 1.52196 1.48952 1.21563 1.34872 1.29224 1.22718 0.98662 0.87472 0.94032 1.22661 0.91703 0.97470 1.04455 1.21683 0.95328 0.93401 0.97617 1.21792 0.98592 1.02634 0.95846 1.20653 0.93896 0.90413 0.91135 1.42352 1.58843 1.06097 1.30078 1.19250 1.21924 0.94869 1.01053 0.91154 1.24728 1.01175 0.95798 0.99163 1.69659 1.48857 0.99993 1.39613 0.86133 0.80121 0.77368 0.82642 1.20570 1.21870 1.21868 1.22530 0.82065 0.97021 0.98817 0.90893 0.90700 0.92352 0.89204 0.90838 0.91012 0.91872 0.84382 0.83911 0.90050 0.90448 0.88439 0.90701 0.91012 0.92704 0.93709 0.96041 0.96055 0.78039 0.93521 0.89752 0.90334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.74 9.17 37.15 0.34 -0.40 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -1.03 9.17 37.15 0.34 -0.69 16 4 C 0.20 2.18 6.64 -155.43 -1.03 1.14 16 5 N -0.30 -4.09 12.36 32.70 0.40 -3.69 16 6 N -0.07 -1.12 13.43 60.35 0.81 -0.31 16 7 N -0.08 -1.19 13.29 60.35 0.80 -0.39 16 8 N -0.29 -3.26 2.83 -59.44 -0.17 -3.43 16 9 C 0.10 0.71 5.55 -5.19 -0.03 0.68 16 10 C 0.52 5.69 7.98 -10.99 -0.09 5.60 16 11 O -0.52 -8.16 16.70 5.56 0.09 -8.07 16 12 N -0.61 -6.15 3.32 -169.19 -0.56 -6.71 16 13 C 0.09 0.74 6.93 -2.31 -0.02 0.72 16 14 C -0.12 -1.47 5.78 -25.33 -0.15 -1.61 16 15 C -0.08 -1.08 0.73 -153.12 -0.11 -1.19 16 16 C -0.13 -1.94 8.06 37.16 0.30 -1.64 16 17 C 0.17 2.93 4.91 -4.04 -0.02 2.91 16 18 N -0.73 -16.59 4.93 -59.91 -0.30 -16.88 16 19 C -0.24 -6.28 9.99 -15.06 -0.15 -6.43 16 20 H 0.07 1.80 7.83 -52.49 -0.41 1.39 16 21 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -26.77 13.06 55.49 0.72 -26.04 16 23 Si 0.91 21.49 29.55 -169.99 -5.02 16.47 16 24 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 25 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 27 C 0.12 1.40 6.14 -2.42 -0.01 1.39 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.25 8.14 -51.93 -0.42 -0.18 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 31 H 0.09 0.43 6.85 -51.93 -0.36 0.07 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.14 0.43 7.13 -51.93 -0.37 0.06 16 36 H 0.14 0.75 7.95 -51.93 -0.41 0.34 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.39 7.31 -51.93 -0.38 0.01 16 39 H 0.10 1.34 7.49 -51.93 -0.39 0.95 16 40 H 0.07 0.89 7.71 -51.93 -0.40 0.49 16 41 H 0.07 1.21 7.01 -51.93 -0.36 0.85 16 42 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.02 0.37 8.12 -51.93 -0.42 -0.05 16 45 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 46 H 0.39 9.18 6.28 -40.82 -0.26 8.93 16 47 H 0.25 7.11 8.31 -40.82 -0.34 6.78 16 48 H 0.08 1.12 7.60 -51.93 -0.39 0.72 16 49 H 0.08 0.87 7.85 -51.93 -0.41 0.46 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -34.83 399.45 -6.14 -40.97 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.92 Total: 2.39 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: -1.02 Total: -0.32 kcal Atomic # 7 Polarization: -59.17 SS G_CDS: 1.72 Total: -57.46 kcal Atomic # 8 Polarization: -8.16 SS G_CDS: 0.09 Total: -8.07 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.83 -6.14 -40.97 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671790278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.361 kcal (2) G-P(sol) polarization free energy of solvation -34.826 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.535 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.968 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds