Wall clock time and date at job start Tue Mar 31 2020 19:48:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52995 * 109.47474 * 2 1 4 4 C 1.50707 * 109.47117 * 119.99574 * 2 1 3 5 5 N 1.31071 * 126.65845 * 300.04493 * 4 2 1 6 6 N 1.28846 * 107.98643 * 179.97438 * 5 4 2 7 7 N 1.28736 * 109.40031 * 359.73055 * 6 5 4 8 8 N 1.29024 * 108.80410 * 0.43919 * 7 6 5 9 9 C 1.46505 * 126.43348 * 179.83126 * 8 7 6 10 10 C 1.50703 * 109.47231 * 269.68926 * 9 8 7 11 11 O 1.21277 * 119.99992 * 0.02562 * 10 9 8 12 12 N 1.34769 * 119.99931 * 180.02562 * 10 9 8 13 13 C 1.48317 * 127.77054 * 359.93266 * 12 10 9 14 14 C 1.54391 * 104.53792 * 219.51516 * 13 12 10 15 15 C 1.54283 * 105.05272 * 336.26252 * 14 13 12 16 16 C 1.52999 * 110.34306 * 118.81938 * 15 14 13 17 17 C 1.53006 * 110.34271 * 241.07368 * 15 14 13 18 18 N 1.46498 * 109.46893 * 298.54752 * 17 15 14 19 19 C 1.36938 * 119.99658 * 179.97438 * 18 17 15 20 20 H 1.07997 * 120.00208 * 359.97438 * 19 18 17 21 21 C 1.38813 * 119.99822 * 180.02562 * 19 18 17 22 22 N 1.31618 * 120.00032 * 359.97438 * 21 19 18 23 23 Si 1.86804 * 119.99997 * 179.97438 * 21 19 18 24 24 H 1.48504 * 109.46991 * 0.02562 * 23 21 19 25 25 H 1.48501 * 109.46805 * 119.99532 * 23 21 19 26 26 H 1.48493 * 109.47556 * 240.00115 * 23 21 19 27 27 C 1.48146 * 127.83810 * 180.02562 * 12 10 9 28 28 H 1.09006 * 109.46994 * 300.00319 * 1 2 3 29 29 H 1.09004 * 109.46951 * 60.00232 * 1 2 3 30 30 H 1.09007 * 109.47444 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47159 * 239.99578 * 2 1 3 32 32 H 1.09004 * 109.46842 * 299.99835 * 3 2 1 33 33 H 1.08997 * 109.47271 * 59.99647 * 3 2 1 34 34 H 1.08996 * 109.47279 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.46978 * 149.69055 * 9 8 7 36 36 H 1.08998 * 109.47125 * 29.68996 * 9 8 7 37 37 H 1.09000 * 110.38040 * 100.79235 * 13 12 10 38 38 H 1.08992 * 110.50701 * 338.30692 * 13 12 10 39 39 H 1.09002 * 110.34401 * 217.33666 * 14 13 12 40 40 H 1.09000 * 110.34137 * 95.18654 * 14 13 12 41 41 H 1.08998 * 109.47408 * 61.45221 * 16 15 14 42 42 H 1.08999 * 109.47461 * 181.45670 * 16 15 14 43 43 H 1.09004 * 109.47274 * 301.44862 * 16 15 14 44 44 H 1.09004 * 109.46749 * 58.54455 * 17 15 14 45 45 H 1.09000 * 109.46913 * 178.54527 * 17 15 14 46 46 H 0.96993 * 120.00249 * 359.97438 * 18 17 15 47 47 H 0.97007 * 119.99686 * 180.02562 * 22 21 19 48 48 H 1.09000 * 110.40949 * 21.63687 * 27 12 10 49 49 H 1.08998 * 110.40973 * 259.20254 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7968 -0.3787 2.4766 6 7 2.3980 -1.2291 3.2351 7 7 3.0061 -2.0980 2.5054 8 7 2.8093 -1.8089 1.2634 9 6 3.3288 -2.5422 0.1064 10 6 4.6669 -1.9731 -0.2895 11 8 5.1402 -1.0466 0.3336 12 7 5.3376 -2.4938 -1.3361 13 6 4.9251 -3.6184 -2.2107 14 6 6.2259 -4.4112 -2.4619 15 6 7.3644 -3.3944 -2.2382 16 6 8.2657 -3.8495 -1.0886 17 6 8.1820 -3.2208 -3.5198 18 7 8.7898 -4.5017 -3.8885 19 6 9.5716 -4.5911 -5.0092 20 1 9.7398 -3.7175 -5.6214 21 6 10.1472 -5.8050 -5.3589 22 7 9.9418 -6.8698 -4.6130 23 14 11.2131 -5.9272 -6.8880 24 1 11.2870 -4.5986 -7.5474 25 1 12.5792 -6.3659 -6.5053 26 1 10.6211 -6.9138 -7.8267 27 6 6.6534 -2.0741 -1.8720 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 1.8933 -0.5139 -0.8899 32 1 1.6767 1.9562 -0.8900 33 1 1.6767 1.9563 0.8899 34 1 3.1300 1.4424 -0.0005 35 1 2.6325 -2.4468 -0.7268 36 1 3.4439 -3.5948 0.3652 37 1 4.5228 -3.2406 -3.1506 38 1 4.1897 -4.2448 -1.7059 39 1 6.2490 -4.7871 -3.4849 40 1 6.3097 -5.2358 -1.7541 41 1 8.7187 -4.8085 -1.3398 42 1 9.0489 -3.1091 -0.9259 43 1 7.6714 -3.9550 -0.1809 44 1 7.5287 -2.8836 -4.3246 45 1 8.9653 -2.4813 -3.3536 46 1 8.6385 -5.2864 -3.3388 47 1 10.3443 -7.7180 -4.8572 48 1 7.2194 -1.5361 -1.1116 49 1 6.5225 -1.4544 -2.7591 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671790278.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:22 Heat of formation + Delta-G solvation = 69.214393 kcal Electronic energy + Delta-G solvation = -29662.447330 eV Core-core repulsion = 25661.694892 eV Total energy + Delta-G solvation = -4000.752438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.31725 -41.41732 -39.51755 -37.17108 -36.52857 -36.42871 -34.42839 -32.60945 -32.13242 -30.64239 -30.39494 -28.11359 -27.84412 -27.07032 -25.49791 -24.87041 -24.08637 -23.98587 -21.78700 -20.75329 -20.12776 -19.21574 -18.98028 -18.38024 -17.57632 -17.28110 -16.72654 -16.56820 -16.19555 -15.98635 -15.49690 -15.47041 -15.07130 -14.80305 -14.67775 -14.34787 -14.20177 -14.08585 -13.80688 -13.72031 -13.48006 -13.24180 -13.09449 -13.02221 -12.84656 -12.83776 -12.70153 -12.52745 -12.39046 -12.30594 -12.28940 -12.07399 -12.05100 -11.90366 -11.70493 -11.56887 -11.35737 -11.25382 -10.99377 -10.91528 -9.89945 -8.94366 -7.92672 -5.19407 0.06152 0.79046 1.11485 1.24965 1.48929 1.50464 1.59196 1.75904 2.58044 2.86185 3.06500 3.12413 3.41844 3.56356 3.58042 3.64843 3.80778 3.84734 4.01285 4.04783 4.17165 4.22173 4.29233 4.35395 4.36762 4.40922 4.59997 4.62324 4.69225 4.72339 4.77587 4.79680 4.83691 4.90824 4.92684 4.95895 4.98484 5.07300 5.13683 5.16525 5.27920 5.33206 5.36308 5.42188 5.44510 5.54536 6.30105 6.32942 6.78673 7.38160 7.46532 8.14497 8.37838 9.30792 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.026695 B = 0.002175 C = 0.002120 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.645930 B =12873.365248 C =13205.693608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.142 4.142 4 C 0.210 3.790 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.105 5.105 8 N -0.293 5.293 9 C 0.092 3.908 10 C 0.521 3.479 11 O -0.578 6.578 12 N -0.606 5.606 13 C 0.101 3.899 14 C -0.125 4.125 15 C -0.073 4.073 16 C -0.125 4.125 17 C 0.167 3.833 18 N -0.738 5.738 19 C -0.238 4.238 20 H 0.074 0.926 21 C -0.073 4.073 22 N -0.967 5.967 23 Si 0.966 3.034 24 H -0.267 1.267 25 H -0.299 1.299 26 H -0.293 1.293 27 C 0.124 3.876 28 H 0.055 0.945 29 H 0.100 0.900 30 H 0.065 0.935 31 H 0.122 0.878 32 H 0.102 0.898 33 H 0.056 0.944 34 H 0.038 0.962 35 H 0.193 0.807 36 H 0.170 0.830 37 H 0.106 0.894 38 H 0.119 0.881 39 H 0.078 0.922 40 H 0.071 0.929 41 H 0.044 0.956 42 H 0.045 0.955 43 H 0.055 0.945 44 H 0.034 0.966 45 H 0.012 0.988 46 H 0.377 0.623 47 H 0.250 0.750 48 H 0.066 0.934 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.362 10.671 3.499 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 C -0.200 4.200 4 C -0.068 4.068 5 N -0.177 5.177 6 N -0.100 5.100 7 N -0.091 5.091 8 N -0.093 5.093 9 C -0.031 4.031 10 C 0.308 3.692 11 O -0.458 6.458 12 N -0.338 5.338 13 C -0.020 4.020 14 C -0.163 4.163 15 C -0.074 4.074 16 C -0.182 4.182 17 C 0.040 3.960 18 N -0.381 5.381 19 C -0.370 4.370 20 H 0.092 0.908 21 C -0.265 4.265 22 N -0.618 5.618 23 Si 0.797 3.203 24 H -0.192 1.192 25 H -0.227 1.227 26 H -0.220 1.220 27 C 0.001 3.999 28 H 0.074 0.926 29 H 0.119 0.881 30 H 0.084 0.916 31 H 0.140 0.860 32 H 0.120 0.880 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.210 0.790 36 H 0.188 0.812 37 H 0.124 0.876 38 H 0.138 0.862 39 H 0.097 0.903 40 H 0.090 0.910 41 H 0.063 0.937 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.052 0.948 45 H 0.030 0.970 46 H 0.211 0.789 47 H 0.059 0.941 48 H 0.084 0.916 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -21.978 11.107 5.202 25.168 hybrid contribution 1.603 -0.715 -1.102 2.072 sum -20.375 10.392 4.100 23.237 Atomic orbital electron populations 1.21855 0.90294 1.03395 1.04207 1.20135 0.98507 0.95975 0.88655 1.21821 1.00348 0.93684 1.04186 1.26834 0.93494 0.88148 0.98348 1.74863 1.21613 1.21484 0.99780 1.78565 1.08056 0.99764 1.23642 1.78805 1.19435 1.22241 0.88650 1.48113 1.33412 1.21099 1.06724 1.22466 0.94840 0.99197 0.86622 1.20313 0.86862 0.82901 0.79076 1.90821 1.70005 1.31133 1.53828 1.48916 1.20601 1.35111 1.29202 1.22885 0.97142 0.86645 0.95313 1.22587 0.93115 0.97390 1.03217 1.21519 0.95488 0.95418 0.95005 1.21704 0.98731 1.00880 0.96909 1.20779 0.94009 0.87843 0.93392 1.42510 1.58726 1.07697 1.29167 1.19623 1.21113 0.94719 1.01525 0.90787 1.25451 1.03194 0.95829 1.02077 1.69798 1.50433 1.00249 1.41343 0.85170 0.77955 0.77615 0.79601 1.19185 1.22657 1.22027 1.22310 0.83005 0.95667 0.98925 0.92621 0.88114 0.91576 0.86013 0.87956 0.92457 0.94320 0.79004 0.81227 0.87552 0.86242 0.90347 0.91018 0.93670 0.93590 0.92613 0.94794 0.96958 0.78942 0.94138 0.91555 0.88939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.96 9.17 71.98 0.66 -0.30 16 2 C -0.01 -0.12 3.26 -11.54 -0.04 -0.15 16 3 C -0.14 -1.77 9.17 71.98 0.66 -1.11 16 4 C 0.21 4.16 6.64 138.14 0.92 5.08 16 5 N -0.33 -8.97 12.36 -50.45 -0.62 -9.59 16 6 N -0.11 -3.32 13.43 37.01 0.50 -2.82 16 7 N -0.11 -2.93 13.29 37.02 0.49 -2.44 16 8 N -0.29 -5.84 2.83 -341.96 -0.97 -6.81 16 9 C 0.09 0.95 5.55 85.63 0.47 1.43 16 10 C 0.52 9.85 7.98 87.66 0.70 10.55 16 11 O -0.58 -17.46 16.70 -3.02 -0.05 -17.51 16 12 N -0.61 -10.10 3.32 -807.58 -2.68 -12.78 16 13 C 0.10 1.11 6.93 86.50 0.60 1.71 16 14 C -0.12 -2.66 5.78 31.50 0.18 -2.48 16 15 C -0.07 -1.92 0.73 -51.28 -0.04 -1.95 16 16 C -0.12 -3.72 8.06 71.98 0.58 -3.14 16 17 C 0.17 5.73 4.91 86.38 0.42 6.16 16 18 N -0.74 -33.71 4.93 -343.44 -1.69 -35.40 16 19 C -0.24 -12.41 9.99 84.03 0.84 -11.57 16 20 H 0.07 3.74 7.83 -2.91 -0.02 3.71 16 21 C -0.07 -3.99 5.50 84.86 0.47 -3.53 16 22 N -0.97 -56.37 13.06 21.65 0.28 -56.08 16 23 Si 0.97 44.28 29.55 68.60 2.03 46.31 16 24 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.24 16 26 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 27 C 0.12 2.72 6.14 86.53 0.53 3.26 16 28 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 29 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 30 H 0.07 0.38 8.14 -2.38 -0.02 0.36 16 31 H 0.12 0.51 6.85 -2.39 -0.02 0.49 16 32 H 0.10 0.67 8.14 -2.38 -0.02 0.65 16 33 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.04 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.19 -0.14 7.13 -2.38 -0.02 -0.16 16 36 H 0.17 0.91 7.95 -2.39 -0.02 0.89 16 37 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 38 H 0.12 0.40 7.31 -2.39 -0.02 0.39 16 39 H 0.08 2.03 7.49 -2.39 -0.02 2.01 16 40 H 0.07 1.58 7.71 -2.39 -0.02 1.56 16 41 H 0.04 1.58 7.01 -2.39 -0.02 1.56 16 42 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 43 H 0.05 1.51 8.14 -2.38 -0.02 1.49 16 44 H 0.03 1.11 8.12 -2.38 -0.02 1.09 16 45 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 46 H 0.38 18.33 6.28 -92.71 -0.58 17.75 16 47 H 0.25 14.20 8.31 -92.70 -0.77 13.43 16 48 H 0.07 1.73 7.60 -2.39 -0.02 1.71 16 49 H 0.09 1.80 7.85 -2.39 -0.02 1.78 16 Total: -1.00 -80.95 399.45 4.62 -76.33 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 0.37 Total: 16.84 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: 6.96 Total: 3.95 kcal Atomic # 7 Polarization: -121.23 SS G_CDS: -4.69 Total: -125.92 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.05 Total: -17.51 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -80.95 4.62 -76.33 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671790278.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.545 kcal (2) G-P(sol) polarization free energy of solvation -80.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.331 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds