Wall clock time and date at job start Tue Mar 31 2020 19:48:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46673 * 2 1 4 4 C 1.50694 * 109.47425 * 119.99881 * 2 1 3 5 5 N 1.31074 * 126.66362 * 299.96216 * 4 2 1 6 6 N 1.28836 * 107.99602 * 180.02562 * 5 4 2 7 7 N 1.28747 * 109.39543 * 359.73081 * 6 5 4 8 8 N 1.29018 * 108.80360 * 0.44071 * 7 6 5 9 9 C 1.46501 * 126.43563 * 179.83373 * 8 7 6 10 10 C 1.50706 * 109.47268 * 269.68644 * 9 8 7 11 11 O 1.21284 * 119.99508 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00297 * 179.97438 * 10 9 8 13 13 C 1.48118 * 127.03156 * 359.95106 * 12 10 9 14 14 C 1.54945 * 103.25072 * 219.33154 * 13 12 10 15 15 C 1.54611 * 102.84288 * 322.62429 * 14 13 12 16 16 C 1.53003 * 110.32650 * 262.95888 * 15 14 13 17 17 C 1.52996 * 110.33185 * 140.74116 * 15 14 13 18 18 N 1.46505 * 109.47099 * 64.37717 * 17 15 14 19 19 C 1.36937 * 119.99824 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00469 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99532 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00423 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99643 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47353 * 90.00167 * 23 21 19 25 25 H 1.48502 * 109.46920 * 210.00006 * 23 21 19 26 26 H 1.48496 * 109.47096 * 329.99573 * 23 21 19 27 27 C 1.47484 * 127.03387 * 179.97438 * 12 10 9 28 28 H 1.09002 * 109.47492 * 59.99786 * 1 2 3 29 29 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47137 * 300.00007 * 1 2 3 31 31 H 1.08996 * 109.47070 * 240.00239 * 2 1 3 32 32 H 1.09002 * 109.46875 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47437 * 299.99529 * 3 2 1 34 34 H 1.08996 * 109.47178 * 60.00305 * 3 2 1 35 35 H 1.09003 * 109.47651 * 149.69172 * 9 8 7 36 36 H 1.09004 * 109.47209 * 29.68601 * 9 8 7 37 37 H 1.08996 * 110.66106 * 100.89622 * 13 12 10 38 38 H 1.08999 * 110.80476 * 337.84373 * 13 12 10 39 39 H 1.09003 * 110.73641 * 204.28448 * 14 13 12 40 40 H 1.09003 * 110.89592 * 81.03689 * 14 13 12 41 41 H 1.09009 * 109.46987 * 175.61826 * 16 15 14 42 42 H 1.09003 * 109.46847 * 295.61527 * 16 15 14 43 43 H 1.09001 * 109.47321 * 55.62010 * 16 15 14 44 44 H 1.08992 * 109.47803 * 184.38183 * 17 15 14 45 45 H 1.09002 * 109.46805 * 304.38390 * 17 15 14 46 46 H 0.96999 * 119.99665 * 0.02562 * 18 17 15 47 47 H 0.96993 * 120.00591 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.91322 * 35.14794 * 27 12 10 49 49 H 1.08997 * 109.91328 * 273.87427 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7983 -0.3779 2.4765 6 7 2.3998 -1.2280 3.2350 7 7 3.0070 -2.0976 2.5051 8 7 2.8091 -1.8091 1.2632 9 6 3.3273 -2.5432 0.1062 10 6 4.6652 -1.9747 -0.2915 11 8 5.1393 -1.0479 0.3308 12 7 5.3352 -2.4969 -1.3378 13 6 4.9064 -3.6227 -2.1996 14 6 6.2215 -4.4053 -2.4420 15 6 7.2734 -3.2792 -2.5678 16 6 7.5344 -2.9578 -4.0407 17 6 8.5741 -3.6867 -1.8730 18 7 9.1546 -4.8419 -2.5621 19 6 10.3290 -5.3865 -2.1154 20 1 10.8274 -4.9643 -1.2554 21 6 10.8792 -6.4808 -2.7687 22 7 10.2721 -6.9951 -3.8171 23 14 12.4815 -7.2233 -2.1597 24 1 12.1884 -8.2816 -1.1601 25 1 13.2196 -7.8147 -3.3046 26 1 13.3104 -6.1639 -1.5307 27 6 6.6455 -2.0645 -1.8587 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.6303 -2.4481 -0.7265 36 1 3.4423 -3.5957 0.3654 37 1 4.4997 -3.2532 -3.1409 38 1 4.1761 -4.2475 -1.6854 39 1 6.1624 -4.9831 -3.3644 40 1 6.4496 -5.0538 -1.5960 41 1 8.2178 -2.1116 -4.1124 42 1 7.9781 -3.8255 -4.5288 43 1 6.5932 -2.7072 -4.5303 44 1 9.2778 -2.8549 -1.9023 45 1 8.3652 -3.9495 -0.8360 46 1 8.7071 -5.2209 -3.3347 47 1 10.6563 -7.7600 -4.2733 48 1 7.2845 -1.7436 -1.0360 49 1 6.5118 -1.2482 -2.5685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001671790279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:27 Heat of formation + Delta-G solvation = 93.078227 kcal Electronic energy + Delta-G solvation = -29689.933370 eV Core-core repulsion = 25690.215745 eV Total energy + Delta-G solvation = -3999.717625 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -44.41086 -40.53434 -38.49723 -36.54452 -35.61275 -35.04899 -32.94764 -31.72979 -30.55822 -29.75617 -29.40739 -27.66551 -26.59484 -25.62016 -24.70023 -23.74395 -23.17799 -22.48269 -21.12184 -19.95165 -19.02775 -18.21467 -17.60346 -17.17450 -16.69851 -16.47229 -15.92441 -15.50885 -15.15534 -14.82556 -14.46558 -14.16248 -13.92269 -13.72095 -13.70380 -13.47402 -13.19924 -12.96352 -12.70600 -12.65936 -12.58639 -12.37412 -12.29370 -12.08283 -11.92795 -11.80138 -11.62479 -11.57659 -11.49979 -11.20681 -11.10514 -10.87608 -10.76733 -10.49951 -10.37293 -10.32993 -10.13491 -10.01499 -9.73806 -9.02480 -8.94190 -6.99570 -5.84090 -3.12276 0.93773 1.51142 2.04718 2.07588 2.57016 3.39598 3.45635 3.46599 3.51265 3.76631 3.79224 4.04354 4.29519 4.47636 4.48774 4.50006 4.61903 4.65412 4.76488 4.88779 5.06623 5.14384 5.15669 5.17415 5.26011 5.28895 5.37185 5.42104 5.48424 5.50488 5.56447 5.66942 5.69194 5.72718 5.75427 5.81785 5.86356 5.96207 6.05698 6.12039 6.27267 6.35560 6.55828 6.66041 6.72861 7.10658 7.61593 7.64978 8.35259 8.42120 9.47199 10.02776 10.38140 11.38762 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021702 B = 0.002307 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.896823 B =12133.820903 C =12706.254148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.010 4.010 3 C -0.144 4.144 4 C 0.201 3.799 5 N -0.300 5.300 6 N -0.073 5.073 7 N -0.083 5.083 8 N -0.295 5.295 9 C 0.097 3.903 10 C 0.518 3.482 11 O -0.523 6.523 12 N -0.609 5.609 13 C 0.090 3.910 14 C -0.119 4.119 15 C -0.079 4.079 16 C -0.133 4.133 17 C 0.166 3.834 18 N -0.728 5.728 19 C -0.239 4.239 20 H 0.069 0.931 21 C -0.012 4.012 22 N -0.934 5.934 23 Si 0.906 3.094 24 H -0.290 1.290 25 H -0.291 1.291 26 H -0.282 1.282 27 C 0.118 3.882 28 H 0.074 0.926 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.089 0.911 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.071 0.929 35 H 0.138 0.862 36 H 0.144 0.856 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.083 0.917 41 H 0.055 0.945 42 H 0.075 0.925 43 H 0.047 0.953 44 H 0.021 0.979 45 H 0.020 0.980 46 H 0.385 0.615 47 H 0.255 0.745 48 H 0.081 0.919 49 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.925 11.806 -0.836 24.916 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.077 4.077 5 N -0.149 5.149 6 N -0.066 5.066 7 N -0.068 5.068 8 N -0.095 5.095 9 C -0.029 4.029 10 C 0.303 3.697 11 O -0.398 6.398 12 N -0.343 5.343 13 C -0.032 4.032 14 C -0.157 4.157 15 C -0.080 4.080 16 C -0.191 4.191 17 C 0.039 3.961 18 N -0.373 5.373 19 C -0.370 4.370 20 H 0.087 0.913 21 C -0.208 4.208 22 N -0.583 5.583 23 Si 0.737 3.263 24 H -0.217 1.217 25 H -0.218 1.218 26 H -0.208 1.208 27 C -0.004 4.004 28 H 0.093 0.907 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.090 0.910 35 H 0.156 0.844 36 H 0.162 0.838 37 H 0.099 0.901 38 H 0.098 0.902 39 H 0.107 0.893 40 H 0.102 0.898 41 H 0.074 0.926 42 H 0.094 0.906 43 H 0.066 0.934 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.219 0.781 47 H 0.065 0.935 48 H 0.099 0.901 49 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -21.439 12.152 1.125 24.670 hybrid contribution 1.005 -0.850 -0.958 1.628 sum -20.434 11.302 0.167 23.352 Atomic orbital electron populations 1.21856 0.91869 1.02718 1.03753 1.19789 0.97349 0.96595 0.89487 1.21832 1.02000 0.92990 1.03422 1.26081 0.94862 0.88733 0.98016 1.74941 1.20646 1.20984 0.98302 1.78616 1.06852 0.98812 1.22359 1.78934 1.18941 1.21797 0.87143 1.47876 1.33875 1.20889 1.06874 1.21960 0.95957 0.98772 0.86244 1.19779 0.86041 0.83808 0.80058 1.90830 1.68347 1.28489 1.52155 1.48715 1.21289 1.34938 1.29390 1.22825 0.98664 0.87386 0.94306 1.22790 0.91796 0.97039 1.04090 1.21673 0.96428 0.93382 0.96558 1.21824 1.00626 1.02866 0.93740 1.20700 0.90273 0.90959 0.94208 1.42336 1.26312 1.33235 1.35431 1.19219 0.98554 1.09294 1.09968 0.91266 1.24708 0.99193 0.98875 0.98057 1.69637 1.40398 1.26238 1.22025 0.86199 0.83351 0.79136 0.77572 1.21716 1.21754 1.20769 1.22260 0.82765 0.96948 0.98414 0.90737 0.92351 0.90880 0.89241 0.91870 0.90865 0.91002 0.84415 0.83834 0.90130 0.90246 0.89279 0.89832 0.92552 0.90650 0.93373 0.96103 0.96235 0.78074 0.93506 0.90097 0.90999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 9.18 37.16 0.34 -0.39 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -1.03 9.18 37.16 0.34 -0.69 16 4 C 0.20 2.20 6.64 -155.43 -1.03 1.17 16 5 N -0.30 -4.16 12.36 32.70 0.40 -3.76 16 6 N -0.07 -1.14 13.43 60.35 0.81 -0.33 16 7 N -0.08 -1.21 13.29 60.35 0.80 -0.41 16 8 N -0.29 -3.35 2.83 -59.44 -0.17 -3.52 16 9 C 0.10 0.73 5.50 -5.19 -0.03 0.70 16 10 C 0.52 5.86 7.96 -10.98 -0.09 5.77 16 11 O -0.52 -8.39 16.77 5.55 0.09 -8.29 16 12 N -0.61 -6.27 3.29 -169.75 -0.56 -6.83 16 13 C 0.09 0.69 6.95 -2.13 -0.01 0.67 16 14 C -0.12 -1.39 5.73 -24.86 -0.14 -1.53 16 15 C -0.08 -1.07 0.67 -153.13 -0.10 -1.17 16 16 C -0.13 -1.72 8.05 37.16 0.30 -1.42 16 17 C 0.17 3.10 4.85 -4.04 -0.02 3.08 16 18 N -0.73 -16.99 5.12 -59.91 -0.31 -17.30 16 19 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 22 N -0.93 -26.99 13.06 55.49 0.72 -26.26 16 23 Si 0.91 21.96 29.55 -169.99 -5.02 16.94 16 24 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 25 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 26 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.12 1.43 6.29 -2.97 -0.02 1.42 16 28 H 0.07 0.24 8.14 -51.93 -0.42 -0.19 16 29 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.42 6.85 -51.93 -0.36 0.06 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 35 H 0.14 0.43 7.13 -51.93 -0.37 0.05 16 36 H 0.14 0.81 7.91 -51.93 -0.41 0.40 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.39 7.24 -51.93 -0.38 0.01 16 39 H 0.09 1.03 7.85 -51.93 -0.41 0.63 16 40 H 0.08 1.16 7.84 -51.93 -0.41 0.75 16 41 H 0.06 0.73 8.14 -51.92 -0.42 0.31 16 42 H 0.07 1.17 6.75 -51.93 -0.35 0.82 16 43 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 44 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.02 0.39 8.11 -51.93 -0.42 -0.03 16 46 H 0.38 9.19 6.18 -40.82 -0.25 8.94 16 47 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 48 H 0.08 1.15 7.59 -51.93 -0.39 0.76 16 49 H 0.07 0.78 7.68 -51.93 -0.40 0.38 16 LS Contribution 399.45 15.07 6.02 6.02 Total: -1.00 -35.67 399.45 -6.13 -41.80 By element: Atomic # 1 Polarization: 9.65 SS G_CDS: -7.92 Total: 1.73 kcal Atomic # 6 Polarization: 1.21 SS G_CDS: -1.01 Total: 0.20 kcal Atomic # 7 Polarization: -60.11 SS G_CDS: 1.71 Total: -58.41 kcal Atomic # 8 Polarization: -8.39 SS G_CDS: 0.09 Total: -8.29 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.02 Total: 16.94 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.67 -6.13 -41.80 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671790279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.882 kcal (2) G-P(sol) polarization free energy of solvation -35.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.078 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds