Wall clock time and date at job start Tue Mar 31 2020 19:48:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46673 * 2 1 4 4 C 1.50694 * 109.47425 * 119.99881 * 2 1 3 5 5 N 1.31074 * 126.66362 * 299.96216 * 4 2 1 6 6 N 1.28836 * 107.99602 * 180.02562 * 5 4 2 7 7 N 1.28747 * 109.39543 * 359.73081 * 6 5 4 8 8 N 1.29018 * 108.80360 * 0.44071 * 7 6 5 9 9 C 1.46501 * 126.43563 * 179.83373 * 8 7 6 10 10 C 1.50706 * 109.47268 * 269.68644 * 9 8 7 11 11 O 1.21284 * 119.99508 * 0.02562 * 10 9 8 12 12 N 1.34774 * 120.00297 * 179.97438 * 10 9 8 13 13 C 1.48118 * 127.03156 * 359.95106 * 12 10 9 14 14 C 1.54945 * 103.25072 * 219.33154 * 13 12 10 15 15 C 1.54611 * 102.84288 * 322.62429 * 14 13 12 16 16 C 1.53003 * 110.32650 * 262.95888 * 15 14 13 17 17 C 1.52996 * 110.33185 * 140.74116 * 15 14 13 18 18 N 1.46505 * 109.47099 * 64.37717 * 17 15 14 19 19 C 1.36937 * 119.99824 * 180.02562 * 18 17 15 20 20 H 1.07995 * 120.00469 * 359.97438 * 19 18 17 21 21 C 1.38814 * 119.99532 * 180.02562 * 19 18 17 22 22 N 1.31619 * 120.00423 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99643 * 179.97438 * 21 19 18 24 24 H 1.48498 * 109.47353 * 90.00167 * 23 21 19 25 25 H 1.48502 * 109.46920 * 210.00006 * 23 21 19 26 26 H 1.48496 * 109.47096 * 329.99573 * 23 21 19 27 27 C 1.47484 * 127.03387 * 179.97438 * 12 10 9 28 28 H 1.09002 * 109.47492 * 59.99786 * 1 2 3 29 29 H 1.09001 * 109.46947 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47137 * 300.00007 * 1 2 3 31 31 H 1.08996 * 109.47070 * 240.00239 * 2 1 3 32 32 H 1.09002 * 109.46875 * 179.97438 * 3 2 1 33 33 H 1.09003 * 109.47437 * 299.99529 * 3 2 1 34 34 H 1.08996 * 109.47178 * 60.00305 * 3 2 1 35 35 H 1.09003 * 109.47651 * 149.69172 * 9 8 7 36 36 H 1.09004 * 109.47209 * 29.68601 * 9 8 7 37 37 H 1.08996 * 110.66106 * 100.89622 * 13 12 10 38 38 H 1.08999 * 110.80476 * 337.84373 * 13 12 10 39 39 H 1.09003 * 110.73641 * 204.28448 * 14 13 12 40 40 H 1.09003 * 110.89592 * 81.03689 * 14 13 12 41 41 H 1.09009 * 109.46987 * 175.61826 * 16 15 14 42 42 H 1.09003 * 109.46847 * 295.61527 * 16 15 14 43 43 H 1.09001 * 109.47321 * 55.62010 * 16 15 14 44 44 H 1.08992 * 109.47803 * 184.38183 * 17 15 14 45 45 H 1.09002 * 109.46805 * 304.38390 * 17 15 14 46 46 H 0.96999 * 119.99665 * 0.02562 * 18 17 15 47 47 H 0.96993 * 120.00591 * 180.02562 * 22 21 19 48 48 H 1.09000 * 109.91322 * 35.14794 * 27 12 10 49 49 H 1.08997 * 109.91328 * 273.87427 * 27 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 7 1.7983 -0.3779 2.4765 6 7 2.3998 -1.2280 3.2350 7 7 3.0070 -2.0976 2.5051 8 7 2.8091 -1.8091 1.2632 9 6 3.3273 -2.5432 0.1062 10 6 4.6652 -1.9747 -0.2915 11 8 5.1393 -1.0479 0.3308 12 7 5.3352 -2.4969 -1.3378 13 6 4.9064 -3.6227 -2.1996 14 6 6.2215 -4.4053 -2.4420 15 6 7.2734 -3.2792 -2.5678 16 6 7.5344 -2.9578 -4.0407 17 6 8.5741 -3.6867 -1.8730 18 7 9.1546 -4.8419 -2.5621 19 6 10.3290 -5.3865 -2.1154 20 1 10.8274 -4.9643 -1.2554 21 6 10.8792 -6.4808 -2.7687 22 7 10.2721 -6.9951 -3.8171 23 14 12.4815 -7.2233 -2.1597 24 1 12.1884 -8.2816 -1.1601 25 1 13.2196 -7.8147 -3.3046 26 1 13.3104 -6.1639 -1.5307 27 6 6.6455 -2.0645 -1.8587 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5139 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 3.1299 1.4426 0.0005 33 1 1.6766 1.9564 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 2.6303 -2.4481 -0.7265 36 1 3.4423 -3.5957 0.3654 37 1 4.4997 -3.2532 -3.1409 38 1 4.1761 -4.2475 -1.6854 39 1 6.1624 -4.9831 -3.3644 40 1 6.4496 -5.0538 -1.5960 41 1 8.2178 -2.1116 -4.1124 42 1 7.9781 -3.8255 -4.5288 43 1 6.5932 -2.7072 -4.5303 44 1 9.2778 -2.8549 -1.9023 45 1 8.3652 -3.9495 -0.8360 46 1 8.7071 -5.2209 -3.3347 47 1 10.6563 -7.7600 -4.2733 48 1 7.2845 -1.7436 -1.0360 49 1 6.5118 -1.2482 -2.5685 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001671790279.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:26 Heat of formation + Delta-G solvation = 67.666047 kcal Electronic energy + Delta-G solvation = -29691.035324 eV Core-core repulsion = 25690.215745 eV Total energy + Delta-G solvation = -4000.819579 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -45.32282 -41.45018 -39.54051 -37.17255 -36.57295 -36.44485 -34.47613 -32.62028 -32.21508 -30.59291 -30.36787 -28.10839 -27.74155 -27.13034 -25.49936 -24.96608 -24.07224 -23.98629 -21.79721 -20.77652 -20.18219 -19.22803 -18.98297 -18.38317 -17.61223 -17.33169 -16.72369 -16.57356 -16.27113 -15.88614 -15.67841 -15.41783 -15.05676 -14.95623 -14.65104 -14.28982 -14.19775 -14.16162 -13.77029 -13.61338 -13.28733 -13.21894 -13.09265 -13.07563 -12.94043 -12.81528 -12.70692 -12.60325 -12.47648 -12.30325 -12.28844 -12.18162 -12.10758 -11.90149 -11.64971 -11.50846 -11.40238 -11.25237 -11.00019 -10.95510 -9.88927 -8.99657 -7.97327 -5.24154 0.05785 0.79177 1.11085 1.24030 1.46009 1.46367 1.54685 1.77214 2.53828 2.86318 3.06742 3.12163 3.35961 3.53570 3.57223 3.63357 3.79411 3.84815 4.01649 4.04987 4.16845 4.20663 4.27784 4.33995 4.35975 4.43020 4.60725 4.62879 4.71344 4.76779 4.78134 4.81273 4.84849 4.90866 4.91545 4.95328 5.00690 5.10494 5.13832 5.20780 5.27170 5.28513 5.36970 5.42063 5.47997 5.54439 6.26115 6.30639 6.78504 7.34133 7.46021 8.08254 8.35744 9.25514 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.021702 B = 0.002307 C = 0.002203 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1289.896823 B =12133.820903 C =12706.254148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.011 4.011 3 C -0.142 4.142 4 C 0.210 3.790 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.108 5.108 8 N -0.293 5.293 9 C 0.093 3.907 10 C 0.517 3.483 11 O -0.580 6.580 12 N -0.605 5.605 13 C 0.099 3.901 14 C -0.122 4.122 15 C -0.072 4.072 16 C -0.126 4.126 17 C 0.165 3.835 18 N -0.733 5.733 19 C -0.248 4.248 20 H 0.065 0.935 21 C -0.066 4.066 22 N -0.962 5.962 23 Si 0.966 3.034 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.276 1.276 27 C 0.124 3.876 28 H 0.101 0.899 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.124 0.876 32 H 0.037 0.963 33 H 0.103 0.897 34 H 0.055 0.945 35 H 0.197 0.803 36 H 0.168 0.832 37 H 0.118 0.882 38 H 0.118 0.882 39 H 0.092 0.908 40 H 0.054 0.946 41 H 0.050 0.950 42 H 0.044 0.956 43 H 0.088 0.912 44 H 0.010 0.990 45 H 0.003 0.997 46 H 0.381 0.619 47 H 0.253 0.747 48 H 0.050 0.950 49 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.436 11.852 -3.036 27.328 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.032 4.032 3 C -0.200 4.200 4 C -0.068 4.068 5 N -0.178 5.178 6 N -0.100 5.100 7 N -0.094 5.094 8 N -0.094 5.094 9 C -0.031 4.031 10 C 0.304 3.696 11 O -0.460 6.460 12 N -0.338 5.338 13 C -0.021 4.021 14 C -0.160 4.160 15 C -0.073 4.073 16 C -0.183 4.183 17 C 0.038 3.962 18 N -0.377 5.377 19 C -0.380 4.380 20 H 0.083 0.917 21 C -0.259 4.259 22 N -0.612 5.612 23 Si 0.795 3.205 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.201 1.201 27 C 0.001 3.999 28 H 0.120 0.880 29 H 0.084 0.916 30 H 0.073 0.927 31 H 0.141 0.859 32 H 0.056 0.944 33 H 0.122 0.878 34 H 0.075 0.925 35 H 0.213 0.787 36 H 0.186 0.814 37 H 0.136 0.864 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.073 0.927 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.107 0.893 44 H 0.028 0.972 45 H 0.021 0.979 46 H 0.215 0.785 47 H 0.061 0.939 48 H 0.068 0.932 49 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -23.964 12.191 -1.081 26.909 hybrid contribution 1.843 -0.816 -0.298 2.038 sum -22.121 11.375 -1.379 24.912 Atomic orbital electron populations 1.21857 0.90243 1.03412 1.04225 1.20149 0.98529 0.95948 0.88605 1.21827 1.00316 0.93690 1.04214 1.26872 0.93446 0.88086 0.98388 1.74850 1.21620 1.21488 0.99820 1.78568 1.08054 0.99760 1.23661 1.78823 1.19473 1.22318 0.88741 1.48118 1.33418 1.21145 1.06696 1.22475 0.94838 0.99067 0.86675 1.20392 0.87044 0.83008 0.79172 1.90822 1.70027 1.31255 1.53877 1.48736 1.20335 1.35277 1.29408 1.23063 0.96847 0.86252 0.95981 1.22745 0.93675 0.96482 1.03101 1.21523 0.94273 0.94964 0.96559 1.21752 1.02367 1.01253 0.92939 1.20792 0.92802 0.88920 0.93649 1.42429 1.25541 1.34231 1.35479 1.19528 0.99617 1.09256 1.09561 0.91746 1.25409 1.02251 0.99654 0.98624 1.69758 1.41692 1.26669 1.23085 0.85259 0.79999 0.78291 0.76915 1.21528 1.21814 1.20137 1.22053 0.83542 0.96635 0.97667 0.87995 0.91560 0.92696 0.85857 0.94388 0.87799 0.92541 0.78650 0.81442 0.86360 0.86404 0.88974 0.92703 0.93062 0.93660 0.89348 0.97239 0.97891 0.78465 0.93854 0.93163 0.88869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.18 71.98 0.66 -0.27 16 2 C -0.01 -0.11 3.26 -11.54 -0.04 -0.15 16 3 C -0.14 -1.76 9.18 71.98 0.66 -1.10 16 4 C 0.21 4.27 6.64 138.13 0.92 5.18 16 5 N -0.33 -9.20 12.36 -50.46 -0.62 -9.83 16 6 N -0.11 -3.44 13.43 37.01 0.50 -2.94 16 7 N -0.11 -3.14 13.29 37.02 0.49 -2.64 16 8 N -0.29 -6.12 2.83 -341.96 -0.97 -7.09 16 9 C 0.09 1.03 5.50 85.63 0.47 1.50 16 10 C 0.52 10.37 7.96 87.66 0.70 11.07 16 11 O -0.58 -18.43 16.77 -3.04 -0.05 -18.48 16 12 N -0.60 -10.54 3.29 -809.35 -2.66 -13.20 16 13 C 0.10 1.01 6.95 86.73 0.60 1.61 16 14 C -0.12 -2.59 5.73 31.81 0.18 -2.41 16 15 C -0.07 -1.87 0.67 -51.29 -0.03 -1.91 16 16 C -0.13 -3.03 8.05 71.98 0.58 -2.45 16 17 C 0.17 6.35 4.85 86.38 0.42 6.77 16 18 N -0.73 -35.06 5.12 -343.46 -1.76 -36.82 16 19 C -0.25 -13.61 9.99 84.03 0.84 -12.77 16 20 H 0.06 3.52 7.83 -2.91 -0.02 3.50 16 21 C -0.07 -3.72 5.50 84.86 0.47 -3.25 16 22 N -0.96 -56.18 13.06 21.65 0.28 -55.90 16 23 Si 0.97 45.57 29.55 68.60 2.03 47.60 16 24 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 26 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 27 C 0.12 2.83 6.29 86.54 0.54 3.37 16 28 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 29 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 30 H 0.05 0.59 8.14 -2.38 -0.02 0.57 16 31 H 0.12 0.46 6.85 -2.39 -0.02 0.44 16 32 H 0.04 0.66 8.14 -2.39 -0.02 0.64 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.20 -0.17 7.13 -2.39 -0.02 -0.18 16 36 H 0.17 1.13 7.91 -2.39 -0.02 1.11 16 37 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 38 H 0.12 0.39 7.24 -2.39 -0.02 0.37 16 39 H 0.09 1.93 7.85 -2.39 -0.02 1.91 16 40 H 0.05 1.49 7.84 -2.39 -0.02 1.47 16 41 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 42 H 0.04 1.38 6.75 -2.39 -0.02 1.36 16 43 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 44 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.00 0.13 8.11 -2.39 -0.02 0.11 16 46 H 0.38 18.63 6.18 -92.71 -0.57 18.05 16 47 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 48 H 0.05 1.46 7.59 -2.39 -0.02 1.44 16 49 H 0.09 1.76 7.68 -2.39 -0.02 1.74 16 Total: -1.00 -84.77 399.45 4.58 -80.19 By element: Atomic # 1 Polarization: 13.53 SS G_CDS: 0.38 Total: 13.91 kcal Atomic # 6 Polarization: -1.76 SS G_CDS: 6.97 Total: 5.20 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -4.74 Total: -128.42 kcal Atomic # 8 Polarization: -18.43 SS G_CDS: -0.05 Total: -18.48 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Total: -84.77 4.58 -80.19 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001671790279.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.856 kcal (2) G-P(sol) polarization free energy of solvation -84.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds