Wall clock time and date at job start Tue Mar 31 2020 19:37:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46815 * 54.99909 * 11 10 9 13 13 C 1.52995 * 109.47408 * 174.99826 * 11 10 9 14 14 C 1.53008 * 109.46935 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47324 * 300.00383 * 14 13 11 16 16 H 1.09003 * 109.47237 * 299.99613 * 15 14 13 17 17 C 1.52998 * 109.46930 * 179.97438 * 15 14 13 18 18 N 1.46507 * 109.47153 * 174.99965 * 17 15 14 19 19 C 1.34775 * 120.00058 * 180.02562 * 18 17 15 20 20 O 1.21283 * 120.00156 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.99885 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.46980 * 179.97438 * 21 19 18 23 23 N 1.46503 * 109.46819 * 179.97438 * 22 21 19 24 24 C 1.34603 * 126.43343 * 125.00245 * 23 22 21 25 25 N 1.31075 * 106.67562 * 180.02562 * 24 23 22 26 26 N 1.28845 * 107.99241 * 359.97438 * 25 24 23 27 27 N 1.28742 * 109.39409 * 359.73904 * 26 25 24 28 28 C 1.52994 * 109.47101 * 60.00110 * 15 14 13 29 29 C 1.53001 * 109.47448 * 299.99771 * 28 15 14 30 30 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 33 33 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 34 34 H 1.08992 * 109.47757 * 300.00545 * 13 11 10 35 35 H 1.09003 * 109.47161 * 60.00714 * 13 11 10 36 36 H 1.08999 * 109.46902 * 60.00788 * 14 13 11 37 37 H 1.09000 * 109.46541 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.47560 * 294.99813 * 17 15 14 39 39 H 1.09006 * 109.47223 * 55.00187 * 17 15 14 40 40 H 0.96997 * 119.99252 * 359.97438 * 18 17 15 41 41 H 1.09010 * 109.46803 * 299.99653 * 21 19 18 42 42 H 1.08996 * 109.47246 * 59.99766 * 21 19 18 43 43 H 1.08993 * 109.47125 * 299.99732 * 22 21 19 44 44 H 1.09006 * 109.47223 * 59.99965 * 22 21 19 45 45 H 1.08000 * 126.66056 * 359.96286 * 24 23 22 46 46 H 1.09003 * 109.47481 * 59.99652 * 28 15 14 47 47 H 1.09000 * 109.47321 * 180.02562 * 28 15 14 48 48 H 1.09008 * 109.47122 * 300.00520 * 29 28 15 49 49 H 1.08990 * 109.47589 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3796 -4.7130 -0.8405 13 6 1.8248 -6.1411 -0.1246 14 6 0.8305 -7.3041 -0.1246 15 6 0.0357 -7.2955 1.1827 16 1 0.7198 -7.4025 2.0246 17 6 -0.9590 -8.4580 1.1824 18 7 -1.6355 -8.5223 2.4803 19 6 -2.5606 -9.4747 2.7116 20 8 -2.8327 -10.2789 1.8455 21 6 -3.2569 -9.5405 4.0465 22 6 -4.2515 -10.7031 4.0462 23 7 -4.9279 -10.7673 5.3441 24 6 -6.2573 -10.7514 5.5543 25 7 -6.4340 -10.8258 6.8510 26 7 -5.2736 -10.8848 7.4080 27 7 -4.3615 -10.8556 6.4999 28 6 -0.7251 -5.9741 1.3084 29 6 0.2691 -4.8111 1.3085 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6849 -3.7145 -0.8894 33 1 2.6848 -3.7144 0.8905 34 1 2.3908 -6.1474 -1.0560 35 1 2.5093 -6.2478 0.7171 36 1 0.1465 -7.1972 -0.9664 37 1 1.3726 -8.2455 -0.2137 38 1 -1.6971 -8.3045 0.3952 39 1 -0.4262 -9.3921 1.0037 40 1 -1.4170 -7.8798 3.1733 41 1 -2.5189 -9.6934 4.8340 42 1 -3.7901 -8.6067 4.2245 43 1 -4.9893 -10.5498 3.2587 44 1 -3.7185 -11.6371 3.8679 45 1 -7.0286 -10.6885 4.8010 46 1 -1.4092 -5.8672 0.4665 47 1 -1.2910 -5.9678 2.2399 48 1 0.9533 -4.9180 2.1503 49 1 -0.2729 -3.8698 1.3975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001672376418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:11 Heat of formation + Delta-G solvation = 64.471180 kcal Electronic energy + Delta-G solvation = -27904.811633 eV Core-core repulsion = 23903.853513 eV Total energy + Delta-G solvation = -4000.958119 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -44.62744 -40.43400 -38.94993 -36.64458 -35.73005 -34.26015 -33.00623 -32.43640 -31.79629 -30.69452 -30.03519 -27.34214 -25.91643 -24.30618 -24.11470 -22.93190 -22.89364 -21.94960 -20.92909 -20.34739 -19.63370 -18.59675 -17.63348 -17.16787 -17.02888 -16.54042 -16.31893 -16.19147 -15.32002 -14.81686 -14.65411 -14.34165 -14.15628 -14.03250 -13.77834 -13.60648 -13.34216 -13.24914 -13.02249 -12.86072 -12.60351 -12.27651 -12.17242 -12.08578 -11.63245 -11.62329 -11.47852 -11.38512 -11.04784 -10.95259 -10.86206 -10.81659 -10.79771 -10.46306 -10.23228 -10.15991 -10.00431 -9.81756 -9.58371 -9.49351 -8.87898 -6.91911 -5.78180 -3.06059 0.76372 1.39884 1.81225 2.06010 2.69559 3.41842 3.47131 3.48739 3.58725 3.75904 3.86710 4.17792 4.23904 4.44840 4.52721 4.57638 4.61523 4.69550 4.72890 4.91428 4.98669 5.09782 5.22644 5.23609 5.25702 5.39326 5.48094 5.55033 5.56677 5.59245 5.62422 5.64568 5.66722 5.92082 5.98619 6.05537 6.15187 6.21337 6.23932 6.29415 6.37688 6.52006 6.69458 6.84366 6.94475 6.96241 7.64693 7.68783 8.14245 8.41469 9.52451 10.11594 10.46051 11.44852 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.001682 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.119821 B =16642.604193 C =18002.673858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.015 4.015 3 Si 0.906 3.094 4 H -0.290 1.290 5 H -0.282 1.282 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.069 0.931 9 N -0.732 5.732 10 C 0.156 3.844 11 C -0.094 4.094 12 H 0.069 0.931 13 C -0.110 4.110 14 C -0.108 4.108 15 C -0.099 4.099 16 H 0.076 0.924 17 C 0.123 3.877 18 N -0.721 5.721 19 C 0.521 3.479 20 O -0.543 6.543 21 C -0.160 4.160 22 C 0.132 3.868 23 N -0.310 5.310 24 C 0.163 3.837 25 N -0.308 5.308 26 N -0.075 5.075 27 N -0.093 5.093 28 C -0.113 4.113 29 C -0.110 4.110 30 H 0.254 0.746 31 H 0.383 0.617 32 H 0.017 0.983 33 H 0.017 0.983 34 H 0.063 0.937 35 H 0.061 0.939 36 H 0.065 0.935 37 H 0.061 0.939 38 H 0.071 0.929 39 H 0.069 0.931 40 H 0.405 0.595 41 H 0.114 0.886 42 H 0.106 0.894 43 H 0.124 0.876 44 H 0.116 0.884 45 H 0.236 0.764 46 H 0.063 0.937 47 H 0.055 0.945 48 H 0.057 0.943 49 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.123 -24.380 5.389 26.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.584 5.584 2 C -0.211 4.211 3 Si 0.738 3.262 4 H -0.218 1.218 5 H -0.208 1.208 6 H -0.218 1.218 7 C -0.369 4.369 8 H 0.087 0.913 9 N -0.376 5.376 10 C 0.029 3.971 11 C -0.112 4.112 12 H 0.087 0.913 13 C -0.148 4.148 14 C -0.146 4.146 15 C -0.118 4.118 16 H 0.095 0.905 17 C -0.001 4.001 18 N -0.372 5.372 19 C 0.306 3.694 20 O -0.421 6.421 21 C -0.200 4.200 22 C 0.010 3.990 23 N -0.112 5.112 24 C -0.136 4.136 25 N -0.156 5.156 26 N -0.069 5.069 27 N -0.079 5.079 28 C -0.151 4.151 29 C -0.147 4.147 30 H 0.064 0.936 31 H 0.217 0.783 32 H 0.034 0.966 33 H 0.035 0.965 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.240 0.760 41 H 0.133 0.867 42 H 0.124 0.876 43 H 0.142 0.858 44 H 0.134 0.866 45 H 0.252 0.748 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.740 -24.924 6.084 26.798 hybrid contribution 0.057 1.465 -0.756 1.650 sum -7.684 -23.458 5.328 25.253 Atomic orbital electron populations 1.69657 1.05089 1.25586 1.58037 1.24729 0.95530 0.97663 1.03184 0.86195 0.78660 0.83883 0.77499 1.21768 1.20792 1.21785 1.19248 0.91041 0.84292 1.42348 0.91273 1.42381 1.05824 1.00000 1.89406 1.20689 0.93292 0.85577 0.97568 1.21321 0.97667 0.94318 0.97937 0.91304 1.21506 0.97472 0.93916 1.01904 1.21475 0.98060 0.98681 0.96393 1.21450 0.96569 0.94059 0.99688 0.90518 1.21546 0.95211 0.98996 0.84300 1.46025 1.40833 1.32897 1.17487 1.20067 0.79775 0.81018 0.88559 1.90756 1.64377 1.40340 1.46634 1.21914 1.00061 1.00210 0.97852 1.21985 0.97287 1.01784 0.77931 1.48823 1.06742 1.46740 1.08899 1.27821 0.86702 1.02078 0.96973 1.75041 1.18483 1.18128 1.03957 1.78686 0.92252 1.14808 1.21192 1.78885 1.23473 1.17757 0.87797 1.21633 0.98061 0.93933 1.01455 1.21523 0.97595 0.98094 0.97515 0.93570 0.78285 0.96562 0.96542 0.91844 0.92051 0.91646 0.92048 0.91089 0.91311 0.76018 0.86733 0.87559 0.85758 0.86595 0.74792 0.91782 0.92624 0.92374 0.90692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.00 13.06 55.49 0.72 -27.27 16 2 C -0.02 -0.44 5.50 -17.43 -0.10 -0.54 16 3 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 4 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 5 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 7 C -0.24 -6.63 9.99 -15.06 -0.15 -6.78 16 8 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 9 N -0.73 -18.17 5.33 -59.91 -0.32 -18.49 16 10 C 0.16 3.05 5.65 -4.04 -0.02 3.02 16 11 C -0.09 -1.39 2.22 -90.62 -0.20 -1.59 16 12 H 0.07 1.09 8.14 -51.92 -0.42 0.67 16 13 C -0.11 -1.26 5.20 -26.73 -0.14 -1.40 16 14 C -0.11 -0.98 5.20 -26.73 -0.14 -1.12 16 15 C -0.10 -0.81 2.23 -90.63 -0.20 -1.02 16 16 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 17 C 0.12 0.94 5.06 -4.04 -0.02 0.92 16 18 N -0.72 -4.52 5.28 -60.29 -0.32 -4.84 16 19 C 0.52 3.46 7.83 -10.99 -0.09 3.37 16 20 O -0.54 -5.42 15.98 5.56 0.09 -5.33 16 21 C -0.16 -0.61 5.84 -27.88 -0.16 -0.77 16 22 C 0.13 0.45 5.77 -4.04 -0.02 0.43 16 23 N -0.31 -1.81 3.44 -62.55 -0.22 -2.02 16 24 C 0.16 0.87 12.79 -90.38 -1.16 -0.29 16 25 N -0.31 -2.98 12.36 29.59 0.37 -2.61 16 26 N -0.07 -0.85 13.43 60.35 0.81 -0.04 16 27 N -0.09 -0.86 13.08 60.35 0.79 -0.07 16 28 C -0.11 -1.14 5.07 -26.73 -0.14 -1.28 16 29 C -0.11 -1.51 5.08 -26.73 -0.14 -1.65 16 30 H 0.25 7.38 8.31 -40.82 -0.34 7.04 16 31 H 0.38 9.93 6.85 -40.82 -0.28 9.65 16 32 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.40 1.87 7.66 -40.82 -0.31 1.55 16 41 H 0.11 0.42 8.14 -51.92 -0.42 0.00 16 42 H 0.11 0.31 8.14 -51.93 -0.42 -0.11 16 43 H 0.12 0.19 8.04 -51.93 -0.42 -0.23 16 44 H 0.12 0.42 8.10 -51.93 -0.42 0.00 16 45 H 0.24 0.03 8.06 -52.49 -0.42 -0.40 16 46 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 47 H 0.06 0.49 7.18 -51.93 -0.37 0.11 16 48 H 0.06 0.79 8.14 -51.92 -0.42 0.37 16 49 H 0.07 1.27 7.18 -51.93 -0.37 0.89 16 LS Contribution 399.47 15.07 6.02 6.02 Total: -1.00 -35.71 399.47 -7.81 -43.52 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -8.06 Total: 2.54 kcal Atomic # 6 Polarization: -6.00 SS G_CDS: -2.67 Total: -8.67 kcal Atomic # 7 Polarization: -57.19 SS G_CDS: 1.84 Total: -55.35 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: 0.09 Total: -5.33 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -35.71 -7.81 -43.52 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672376418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.995 kcal (2) G-P(sol) polarization free energy of solvation -35.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.471 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds