Wall clock time and date at job start Tue Mar 31 2020 19:37:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31624 * 1 3 3 Si 1.86803 * 119.99814 * 2 1 4 4 H 1.48498 * 109.47174 * 90.00090 * 3 2 1 5 5 H 1.48501 * 109.47062 * 210.00041 * 3 2 1 6 6 H 1.48499 * 109.46981 * 330.00195 * 3 2 1 7 7 C 1.38805 * 120.00257 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00366 * 179.97438 * 7 2 1 9 9 N 1.36945 * 119.99878 * 0.02562 * 7 2 1 10 10 C 1.46496 * 119.99718 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.47205 * 179.97438 * 10 9 7 12 12 H 1.09008 * 109.46815 * 54.99909 * 11 10 9 13 13 C 1.52995 * 109.47408 * 174.99826 * 11 10 9 14 14 C 1.53008 * 109.46935 * 180.02562 * 13 11 10 15 15 C 1.52997 * 109.47324 * 300.00383 * 14 13 11 16 16 H 1.09003 * 109.47237 * 299.99613 * 15 14 13 17 17 C 1.52998 * 109.46930 * 179.97438 * 15 14 13 18 18 N 1.46507 * 109.47153 * 174.99965 * 17 15 14 19 19 C 1.34775 * 120.00058 * 180.02562 * 18 17 15 20 20 O 1.21283 * 120.00156 * 0.02562 * 19 18 17 21 21 C 1.50698 * 119.99885 * 180.02562 * 19 18 17 22 22 C 1.52998 * 109.46980 * 179.97438 * 21 19 18 23 23 N 1.46503 * 109.46819 * 179.97438 * 22 21 19 24 24 C 1.34603 * 126.43343 * 125.00245 * 23 22 21 25 25 N 1.31075 * 106.67562 * 180.02562 * 24 23 22 26 26 N 1.28845 * 107.99241 * 359.97438 * 25 24 23 27 27 N 1.28742 * 109.39409 * 359.73904 * 26 25 24 28 28 C 1.52994 * 109.47101 * 60.00110 * 15 14 13 29 29 C 1.53001 * 109.47448 * 299.99771 * 28 15 14 30 30 H 0.97001 * 119.99885 * 359.97438 * 1 2 3 31 31 H 0.96996 * 119.99783 * 359.97438 * 9 7 2 32 32 H 1.08997 * 109.47963 * 300.00084 * 10 9 7 33 33 H 1.09000 * 109.47287 * 60.00394 * 10 9 7 34 34 H 1.08992 * 109.47757 * 300.00545 * 13 11 10 35 35 H 1.09003 * 109.47161 * 60.00714 * 13 11 10 36 36 H 1.08999 * 109.46902 * 60.00788 * 14 13 11 37 37 H 1.09000 * 109.46541 * 180.02562 * 14 13 11 38 38 H 1.08998 * 109.47560 * 294.99813 * 17 15 14 39 39 H 1.09006 * 109.47223 * 55.00187 * 17 15 14 40 40 H 0.96997 * 119.99252 * 359.97438 * 18 17 15 41 41 H 1.09010 * 109.46803 * 299.99653 * 21 19 18 42 42 H 1.08996 * 109.47246 * 59.99766 * 21 19 18 43 43 H 1.08993 * 109.47125 * 299.99732 * 22 21 19 44 44 H 1.09006 * 109.47223 * 59.99965 * 22 21 19 45 45 H 1.08000 * 126.66056 * 359.96286 * 24 23 22 46 46 H 1.09003 * 109.47481 * 59.99652 * 28 15 14 47 47 H 1.09000 * 109.47321 * 180.02562 * 28 15 14 48 48 H 1.09008 * 109.47122 * 300.00520 * 29 28 15 49 49 H 1.08990 * 109.47589 * 179.97438 * 29 28 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0465 1.4001 5 1 3.5478 1.4403 -0.7001 6 1 1.4476 2.6527 -0.7000 7 6 2.0103 -1.2021 0.0005 8 1 3.0903 -1.2021 0.0001 9 7 1.3256 -2.3880 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.0640 -4.8197 0.0012 12 1 0.3796 -4.7130 -0.8405 13 6 1.8248 -6.1411 -0.1246 14 6 0.8305 -7.3041 -0.1246 15 6 0.0357 -7.2955 1.1827 16 1 0.7198 -7.4025 2.0246 17 6 -0.9590 -8.4580 1.1824 18 7 -1.6355 -8.5223 2.4803 19 6 -2.5606 -9.4747 2.7116 20 8 -2.8327 -10.2789 1.8455 21 6 -3.2569 -9.5405 4.0465 22 6 -4.2515 -10.7031 4.0462 23 7 -4.9279 -10.7673 5.3441 24 6 -6.2573 -10.7514 5.5543 25 7 -6.4340 -10.8258 6.8510 26 7 -5.2736 -10.8848 7.4080 27 7 -4.3615 -10.8556 6.4999 28 6 -0.7251 -5.9741 1.3084 29 6 0.2691 -4.8111 1.3085 30 1 -0.4850 0.8401 0.0004 31 1 0.3557 -2.3880 0.0005 32 1 2.6849 -3.7145 -0.8894 33 1 2.6848 -3.7144 0.8905 34 1 2.3908 -6.1474 -1.0560 35 1 2.5093 -6.2478 0.7171 36 1 0.1465 -7.1972 -0.9664 37 1 1.3726 -8.2455 -0.2137 38 1 -1.6971 -8.3045 0.3952 39 1 -0.4262 -9.3921 1.0037 40 1 -1.4170 -7.8798 3.1733 41 1 -2.5189 -9.6934 4.8340 42 1 -3.7901 -8.6067 4.2245 43 1 -4.9893 -10.5498 3.2587 44 1 -3.7185 -11.6371 3.8679 45 1 -7.0286 -10.6885 4.8010 46 1 -1.4092 -5.8672 0.4665 47 1 -1.2910 -5.9678 2.2399 48 1 0.9533 -4.9180 2.1503 49 1 -0.2729 -3.8698 1.3975 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001672376418.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:37:09 Heat of formation + Delta-G solvation = 40.105768 kcal Electronic energy + Delta-G solvation = -27905.868196 eV Core-core repulsion = 23903.853513 eV Total energy + Delta-G solvation = -4002.014683 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.17197 -41.01552 -39.87371 -37.22371 -36.81614 -35.56929 -33.72250 -33.51610 -32.59615 -31.62259 -31.48023 -28.31941 -26.81180 -25.52611 -24.80808 -24.11589 -23.60236 -22.98262 -21.58844 -21.30671 -20.61200 -19.16187 -19.00941 -18.11847 -17.58886 -17.05347 -16.84503 -16.70522 -16.63991 -16.17979 -15.68348 -15.31171 -15.26218 -14.92519 -14.78559 -14.58953 -14.49558 -14.14633 -13.92616 -13.62556 -13.46215 -13.19582 -13.08943 -12.99744 -12.85545 -12.57173 -12.53839 -12.42732 -12.19912 -12.10057 -11.93813 -11.87544 -11.86314 -11.75278 -11.36480 -11.30635 -11.14175 -10.96923 -10.86830 -10.78748 -10.07555 -8.98560 -7.96112 -5.24107 0.27503 1.01563 1.23117 1.46124 1.47634 1.56189 1.56191 2.22349 2.55259 3.25077 3.37248 3.48056 3.56253 3.66154 3.77237 3.79425 3.86402 3.88406 4.00325 4.23142 4.27360 4.35294 4.36612 4.43809 4.48237 4.57280 4.61626 4.64069 4.66707 4.67964 4.80454 4.81360 4.89055 4.96080 5.06264 5.11148 5.22794 5.25458 5.26101 5.31808 5.35679 5.40259 5.46228 5.50739 5.61488 5.68601 6.26979 6.48445 7.16526 7.33049 7.56657 8.11038 8.34073 9.27441 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.015448 B = 0.001682 C = 0.001555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1812.119821 B =16642.604193 C =18002.673858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.076 4.076 3 Si 0.973 3.027 4 H -0.287 1.287 5 H -0.270 1.270 6 H -0.295 1.295 7 C -0.247 4.247 8 H 0.073 0.927 9 N -0.743 5.743 10 C 0.152 3.848 11 C -0.085 4.085 12 H 0.054 0.946 13 C -0.103 4.103 14 C -0.105 4.105 15 C -0.087 4.087 16 H 0.088 0.912 17 C 0.130 3.870 18 N -0.718 5.718 19 C 0.524 3.476 20 O -0.577 6.577 21 C -0.150 4.150 22 C 0.130 3.870 23 N -0.303 5.303 24 C 0.182 3.818 25 N -0.347 5.347 26 N -0.114 5.114 27 N -0.109 5.109 28 C -0.105 4.105 29 C -0.105 4.105 30 H 0.251 0.749 31 H 0.374 0.626 32 H 0.013 0.987 33 H 0.017 0.983 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.062 0.938 37 H 0.083 0.917 38 H 0.061 0.939 39 H 0.070 0.930 40 H 0.414 0.586 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.150 0.850 44 H 0.115 0.885 45 H 0.286 0.714 46 H 0.055 0.945 47 H 0.072 0.928 48 H 0.061 0.939 49 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.872 -25.585 5.138 27.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.620 5.620 2 C -0.268 4.268 3 Si 0.802 3.198 4 H -0.214 1.214 5 H -0.195 1.195 6 H -0.221 1.221 7 C -0.379 4.379 8 H 0.091 0.909 9 N -0.386 5.386 10 C 0.026 3.974 11 C -0.104 4.104 12 H 0.073 0.927 13 C -0.141 4.141 14 C -0.143 4.143 15 C -0.106 4.106 16 H 0.106 0.894 17 C 0.006 3.994 18 N -0.369 5.369 19 C 0.310 3.690 20 O -0.457 6.457 21 C -0.191 4.191 22 C 0.010 3.990 23 N -0.105 5.105 24 C -0.116 4.116 25 N -0.195 5.195 26 N -0.108 5.108 27 N -0.097 5.097 28 C -0.143 4.143 29 C -0.143 4.143 30 H 0.060 0.940 31 H 0.206 0.794 32 H 0.031 0.969 33 H 0.035 0.965 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.101 0.899 38 H 0.079 0.921 39 H 0.089 0.911 40 H 0.251 0.749 41 H 0.135 0.865 42 H 0.138 0.862 43 H 0.168 0.832 44 H 0.133 0.867 45 H 0.301 0.699 46 H 0.074 0.926 47 H 0.091 0.909 48 H 0.079 0.921 49 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -7.444 -26.147 5.844 27.807 hybrid contribution 0.020 1.823 -0.763 1.976 sum -7.424 -24.324 5.081 25.934 Atomic orbital electron populations 1.69814 1.06549 1.26030 1.59608 1.25555 0.96430 1.01054 1.03790 0.85147 0.77704 0.79507 0.77453 1.21370 1.19525 1.22124 1.19657 0.91473 0.85614 1.41109 0.90905 1.42595 1.05622 1.01165 1.89250 1.20901 0.94140 0.85267 0.97089 1.21233 0.96742 0.94398 0.98028 0.92724 1.21450 0.97768 0.92590 1.02329 1.21456 0.97672 0.98411 0.96748 1.21325 0.96532 0.92983 0.99728 0.89355 1.21365 0.94783 0.98512 0.84727 1.45996 1.40592 1.33077 1.17273 1.20418 0.79358 0.80239 0.88985 1.90746 1.65441 1.41594 1.47953 1.21843 1.00116 1.01064 0.96070 1.22208 0.97983 1.01623 0.77227 1.48963 1.07077 1.45801 1.08652 1.28696 0.87247 0.99123 0.96554 1.74953 1.18464 1.19878 1.06193 1.78658 0.93083 1.16581 1.22519 1.78799 1.23810 1.18256 0.88800 1.21551 0.97217 0.93411 1.02090 1.21430 0.97982 0.97928 0.96943 0.94018 0.79366 0.96883 0.96478 0.91736 0.91272 0.91922 0.89891 0.92082 0.91146 0.74902 0.86458 0.86178 0.83205 0.86664 0.69925 0.92600 0.90901 0.92069 0.94539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.21 13.06 21.65 0.28 -58.93 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 3 Si 0.97 46.11 29.55 68.60 2.03 48.13 16 4 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 5 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 6 H -0.29 -14.01 7.11 99.48 0.71 -13.31 16 7 C -0.25 -13.88 9.99 84.03 0.84 -13.04 16 8 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 9 N -0.74 -37.77 5.33 -343.47 -1.83 -39.60 16 10 C 0.15 5.99 5.65 86.38 0.49 6.48 16 11 C -0.09 -2.51 2.22 -10.79 -0.02 -2.53 16 12 H 0.05 1.76 8.14 -2.38 -0.02 1.74 16 13 C -0.10 -2.18 5.20 30.60 0.16 -2.02 16 14 C -0.10 -1.65 5.20 30.60 0.16 -1.49 16 15 C -0.09 -1.21 2.23 -10.80 -0.02 -1.24 16 16 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 17 C 0.13 1.67 5.06 86.38 0.44 2.11 16 18 N -0.72 -7.22 5.28 -463.04 -2.45 -9.67 16 19 C 0.52 5.76 7.83 87.66 0.69 6.44 16 20 O -0.58 -10.39 15.98 -3.04 -0.05 -10.44 16 21 C -0.15 -0.78 5.84 29.85 0.17 -0.61 16 22 C 0.13 0.57 5.77 86.38 0.50 1.07 16 23 N -0.30 -2.94 3.44 -351.81 -1.21 -4.15 16 24 C 0.18 1.52 12.79 180.26 2.31 3.82 16 25 N -0.35 -6.46 12.36 -60.29 -0.74 -7.20 16 26 N -0.11 -2.59 13.43 37.01 0.50 -2.09 16 27 N -0.11 -1.96 13.08 37.02 0.48 -1.47 16 28 C -0.11 -1.97 5.07 30.59 0.16 -1.82 16 29 C -0.11 -2.88 5.08 30.60 0.16 -2.72 16 30 H 0.25 14.84 8.31 -92.71 -0.77 14.07 16 31 H 0.37 20.12 6.85 -92.71 -0.64 19.48 16 32 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 34 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 38 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 39 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 40 H 0.41 2.66 7.66 -92.71 -0.71 1.95 16 41 H 0.12 0.61 8.14 -2.38 -0.02 0.59 16 42 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 43 H 0.15 -0.07 8.04 -2.39 -0.02 -0.09 16 44 H 0.12 0.60 8.10 -2.38 -0.02 0.58 16 45 H 0.29 -1.10 8.06 -2.91 -0.02 -1.12 16 46 H 0.06 1.16 8.14 -2.39 -0.02 1.14 16 47 H 0.07 1.13 7.18 -2.39 -0.02 1.11 16 48 H 0.06 1.61 8.14 -2.38 -0.02 1.59 16 49 H 0.04 1.27 7.18 -2.39 -0.02 1.25 16 Total: -1.00 -79.97 399.47 3.10 -76.86 By element: Atomic # 1 Polarization: 18.40 SS G_CDS: -0.39 Total: 18.02 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 6.48 Total: -9.47 kcal Atomic # 7 Polarization: -118.14 SS G_CDS: -4.97 Total: -123.11 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: -0.05 Total: -10.44 kcal Atomic # 14 Polarization: 46.11 SS G_CDS: 2.03 Total: 48.13 kcal Total: -79.97 3.10 -76.86 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001672376418.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.969 kcal (2) G-P(sol) polarization free energy of solvation -79.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.103 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.863 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.106 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds