Wall clock time and date at job start Tue Mar 31 2020 19:31:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99975 * 2 1 4 4 C 1.52998 * 109.47352 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46730 * 65.00241 * 4 3 2 6 6 C 1.36929 * 120.00049 * 270.00227 * 5 4 3 7 7 H 1.08008 * 120.00285 * 141.45627 * 6 5 4 8 8 C 1.38818 * 120.00229 * 321.45507 * 6 5 4 9 9 N 1.31620 * 119.99649 * 338.83515 * 8 6 5 10 10 Si 1.86797 * 120.00051 * 158.83309 * 8 6 5 11 11 H 1.48502 * 109.47238 * 90.00180 * 10 8 6 12 12 H 1.48506 * 109.46671 * 210.00161 * 10 8 6 13 13 H 1.48497 * 109.47234 * 329.99779 * 10 8 6 14 14 C 1.46495 * 119.99993 * 89.99927 * 5 4 3 15 15 C 1.53003 * 109.47593 * 264.71155 * 14 5 4 16 16 N 1.46495 * 109.47593 * 180.02562 * 15 14 5 17 17 C 1.34778 * 119.99950 * 180.02562 * 16 15 14 18 18 O 1.21277 * 120.00127 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99642 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.54890 * 300.11015 * 19 17 16 21 21 C 1.53154 * 109.50678 * 179.97438 * 19 17 16 22 22 C 1.53265 * 109.49129 * 170.59393 * 21 19 17 23 23 N 1.46463 * 108.80233 * 50.37874 * 22 21 19 24 24 C 1.36309 * 127.77607 * 162.80433 * 23 22 21 25 25 C 1.34857 * 106.68948 * 180.09398 * 24 23 22 26 26 N 1.34292 * 108.06616 * 359.97438 * 25 24 23 27 27 C 1.30094 * 109.21704 * 359.97438 * 26 25 24 28 28 C 1.51036 * 127.38936 * 180.02562 * 27 26 25 29 29 H 1.09008 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47495 * 299.99587 * 1 2 3 31 31 H 1.08997 * 109.47032 * 60.00316 * 1 2 3 32 32 H 1.09005 * 109.46699 * 60.00129 * 3 2 1 33 33 H 1.08994 * 109.47182 * 300.00425 * 3 2 1 34 34 H 1.08998 * 109.47455 * 305.00757 * 4 3 2 35 35 H 1.09000 * 109.47396 * 185.00043 * 4 3 2 36 36 H 0.96994 * 119.99994 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.47677 * 144.70806 * 14 5 4 38 38 H 1.09008 * 109.47463 * 24.70916 * 14 5 4 39 39 H 1.09007 * 109.46708 * 59.99603 * 15 14 5 40 40 H 1.08997 * 109.46764 * 300.00693 * 15 14 5 41 41 H 0.97002 * 119.99810 * 359.97438 * 16 15 14 42 42 H 1.08998 * 109.46337 * 290.59045 * 21 19 17 43 43 H 1.08992 * 109.46638 * 50.58698 * 21 19 17 44 44 H 1.08997 * 109.58061 * 170.17403 * 22 21 19 45 45 H 1.09001 * 109.57810 * 290.57862 * 22 21 19 46 46 H 1.08002 * 126.65432 * 0.07580 * 24 23 22 47 47 H 1.07996 * 125.96736 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.72009 * 44.36189 * 28 27 26 49 49 H 1.09005 * 109.71124 * 283.71542 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0978 -0.7973 -1.3346 7 1 3.8083 -1.3107 -2.2398 8 6 4.5925 -1.5178 -0.2561 9 7 5.3194 -0.9144 0.6604 10 14 4.2266 -3.3434 -0.1056 11 1 5.2896 -4.1196 -0.7931 12 1 4.1858 -3.7232 1.3295 13 1 2.9136 -3.6385 -0.7332 14 6 4.2882 1.3999 -2.4130 15 6 3.0607 1.4872 -3.3223 16 7 3.3725 2.3226 -4.4847 17 6 2.4347 2.5426 -5.4274 18 8 1.3329 2.0486 -5.3136 19 6 2.7556 3.4014 -6.6234 20 1 3.0345 4.4011 -6.2902 21 6 1.5274 3.4895 -7.5341 22 6 1.7708 4.5429 -8.6205 23 7 3.0644 4.2775 -9.2539 24 6 3.5218 4.7494 -10.4481 25 6 4.7585 4.2391 -10.6181 26 7 5.0443 3.4757 -9.5509 27 6 4.0361 3.4938 -8.7290 28 6 3.9202 2.7788 -7.4037 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8463 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9785 2.1766 0.0902 36 1 5.6648 -1.4177 1.4142 37 1 5.1186 0.9599 -2.9650 38 1 4.5639 2.3999 -2.0780 39 1 2.2302 1.9274 -2.7703 40 1 2.7849 0.4874 -3.6573 41 1 4.2536 2.7180 -4.5755 42 1 1.3511 2.5204 -8.0008 43 1 0.6563 3.7719 -6.9429 44 1 0.9795 4.4863 -9.3680 45 1 1.7809 5.5357 -8.1708 46 1 2.9958 5.4046 -11.1266 47 1 5.4059 4.4138 -11.4647 48 1 4.8456 2.8966 -6.8401 49 1 3.7243 1.7199 -7.5732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001677313344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:49 Heat of formation + Delta-G solvation = 0.508086 kcal Electronic energy + Delta-G solvation = -29396.073323 eV Core-core repulsion = 25360.048805 eV Total energy + Delta-G solvation = -4036.024518 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -42.55819 -39.84937 -37.31986 -36.51304 -35.71539 -34.27737 -33.53519 -31.40151 -30.08629 -29.69941 -28.84680 -27.28430 -25.63699 -25.02170 -24.07000 -23.01985 -21.74021 -21.52490 -20.58503 -19.94993 -19.28981 -17.35159 -17.19645 -16.67747 -16.16740 -15.85877 -15.55091 -15.45217 -14.99867 -14.63780 -14.46454 -14.38592 -14.19711 -14.03541 -13.98187 -13.71093 -13.54409 -13.25994 -12.99852 -12.58760 -12.23829 -12.09595 -11.97648 -11.80831 -11.55720 -11.46214 -11.17131 -10.89557 -10.77004 -10.67448 -10.60516 -10.16580 -10.05749 -9.97914 -9.82631 -9.77473 -9.71212 -8.89319 -8.67457 -8.57481 -8.39106 -6.57276 -5.74175 -3.31585 1.80745 2.49425 2.63695 2.94281 3.22270 3.44438 3.51359 3.59156 3.96518 4.15778 4.26569 4.30109 4.57863 4.68090 4.70087 4.75414 4.81517 4.84936 5.09247 5.20506 5.31804 5.37125 5.37641 5.50376 5.53686 5.62683 5.74771 5.76203 5.78917 5.83170 5.88950 6.05779 6.06926 6.14753 6.25428 6.29757 6.53738 6.54289 6.63456 6.65323 6.69384 6.90650 6.93602 7.61113 7.65269 7.89161 7.90106 8.08300 8.31272 8.58255 9.21214 9.84506 10.38792 11.28468 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.002444 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.535668 B =11453.733646 C =12295.114233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.044 3.956 4 C 0.144 3.856 5 N -0.570 5.570 6 C -0.246 4.246 7 H 0.057 0.943 8 C 0.022 3.978 9 N -0.892 5.892 10 Si 0.899 3.101 11 H -0.289 1.289 12 H -0.291 1.291 13 H -0.277 1.277 14 C 0.138 3.862 15 C 0.095 3.905 16 N -0.720 5.720 17 C 0.516 3.484 18 O -0.540 6.540 19 C -0.113 4.113 20 H 0.103 0.897 21 C -0.116 4.116 22 C 0.103 3.897 23 N -0.457 5.457 24 C -0.057 4.057 25 C -0.032 4.032 26 N -0.487 5.487 27 C 0.212 3.788 28 C -0.025 4.025 29 H 0.074 0.926 30 H 0.026 0.974 31 H 0.029 0.971 32 H 0.024 0.976 33 H 0.029 0.971 34 H 0.103 0.897 35 H 0.041 0.959 36 H 0.253 0.747 37 H 0.053 0.947 38 H 0.040 0.960 39 H 0.058 0.942 40 H 0.067 0.933 41 H 0.398 0.602 42 H 0.083 0.917 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.174 0.826 47 H 0.169 0.831 48 H 0.103 0.897 49 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.590 14.632 -15.712 22.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.271 6.271 3 C -0.035 4.035 4 C 0.017 3.983 5 N -0.289 5.289 6 C -0.376 4.376 7 H 0.074 0.926 8 C -0.178 4.178 9 N -0.534 5.534 10 Si 0.728 3.272 11 H -0.216 1.216 12 H -0.217 1.217 13 H -0.202 1.202 14 C 0.010 3.990 15 C -0.030 4.030 16 N -0.370 5.370 17 C 0.300 3.700 18 O -0.418 6.418 19 C -0.135 4.135 20 H 0.121 0.879 21 C -0.154 4.154 22 C -0.019 4.019 23 N -0.140 5.140 24 C -0.190 4.190 25 C -0.180 4.180 26 N -0.206 5.206 27 C -0.051 4.051 28 C -0.064 4.064 29 H 0.093 0.907 30 H 0.044 0.956 31 H 0.048 0.952 32 H 0.042 0.958 33 H 0.047 0.953 34 H 0.120 0.880 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.058 0.942 39 H 0.077 0.923 40 H 0.086 0.914 41 H 0.231 0.769 42 H 0.101 0.899 43 H 0.120 0.880 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.191 0.809 47 H 0.187 0.813 48 H 0.121 0.879 49 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -6.581 13.622 -15.252 21.482 hybrid contribution -0.963 0.123 -0.190 0.990 sum -7.544 13.745 -15.442 22.007 Atomic orbital electron populations 1.22638 0.84194 1.01523 0.98426 1.88212 1.16587 1.27534 1.94816 1.23493 0.98836 0.84269 0.96893 1.21064 0.87507 0.96612 0.93104 1.43509 1.75502 1.02878 1.07043 1.18794 1.36323 0.81317 1.01141 0.92583 1.25062 0.96011 0.97827 0.98902 1.69978 1.33667 1.35967 1.13820 0.86381 0.78404 0.85514 0.76875 1.21631 1.21671 1.20197 1.21002 0.93249 0.94781 0.89986 1.22491 1.01137 0.94153 0.85239 1.46144 1.15388 1.51916 1.23562 1.20173 0.84990 0.81337 0.83471 1.90717 1.22560 1.50712 1.77762 1.21452 0.96641 1.00812 0.94569 0.87903 1.21725 0.98366 0.99739 0.95545 1.22063 0.83023 1.00388 0.96402 1.45461 1.14800 1.37059 1.16690 1.22566 0.98638 1.07244 0.90587 1.22384 0.95662 1.00810 0.99115 1.70077 1.25951 1.21216 1.03336 1.23149 0.85566 0.98039 0.98307 1.20144 0.98871 0.99260 0.88139 0.90711 0.95569 0.95206 0.95806 0.95323 0.87984 0.94076 0.93683 0.92860 0.94182 0.92342 0.91439 0.76856 0.89858 0.88029 0.88791 0.89511 0.80899 0.81326 0.87877 0.88502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.51 11.01 101.05 1.11 1.62 16 2 O -0.35 -7.85 10.18 -35.23 -0.36 -8.21 16 3 C 0.04 0.89 6.28 37.16 0.23 1.12 16 4 C 0.14 3.23 5.76 -4.04 -0.02 3.21 16 5 N -0.57 -13.43 2.41 -173.23 -0.42 -13.84 16 6 C -0.25 -6.59 8.95 -15.06 -0.13 -6.73 16 7 H 0.06 1.54 7.92 -52.48 -0.42 1.12 16 8 C 0.02 0.60 4.95 -17.43 -0.09 0.52 16 9 N -0.89 -25.34 11.53 55.49 0.64 -24.70 16 10 Si 0.90 22.19 29.60 -169.99 -5.03 17.15 16 11 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 12 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 13 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 14 C 0.14 2.60 5.83 -4.04 -0.02 2.58 16 15 C 0.10 1.65 5.97 -4.04 -0.02 1.63 16 16 N -0.72 -9.43 5.46 -60.30 -0.33 -9.76 16 17 C 0.52 6.77 7.13 -10.99 -0.08 6.69 16 18 O -0.54 -9.32 15.83 5.56 0.09 -9.24 16 19 C -0.11 -1.03 2.55 -91.49 -0.23 -1.26 16 20 H 0.10 0.77 8.12 -51.93 -0.42 0.35 16 21 C -0.12 -0.95 4.67 -26.51 -0.12 -1.07 16 22 C 0.10 0.66 6.98 -3.92 -0.03 0.63 16 23 N -0.46 -4.19 3.13 -113.77 -0.36 -4.54 16 24 C -0.06 -0.49 11.64 -16.76 -0.20 -0.69 16 25 C -0.03 -0.33 11.87 -17.68 -0.21 -0.54 16 26 N -0.49 -6.39 11.24 -10.62 -0.12 -6.51 16 27 C 0.21 2.39 7.65 -155.25 -1.19 1.20 16 28 C -0.02 -0.24 5.47 -27.52 -0.15 -0.39 16 29 H 0.07 1.20 8.14 -51.92 -0.42 0.77 16 30 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.03 0.55 6.48 -51.93 -0.34 0.22 16 34 H 0.10 2.67 5.58 -51.93 -0.29 2.38 16 35 H 0.04 0.84 7.86 -51.93 -0.41 0.43 16 36 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 37 H 0.05 1.02 8.08 -51.93 -0.42 0.61 16 38 H 0.04 0.68 7.83 -51.92 -0.41 0.27 16 39 H 0.06 1.10 6.48 -51.92 -0.34 0.76 16 40 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 41 H 0.40 4.07 8.20 -40.82 -0.33 3.73 16 42 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 43 H 0.10 0.83 7.79 -51.93 -0.40 0.43 16 44 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 45 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.17 0.88 8.06 -52.49 -0.42 0.46 16 47 H 0.17 1.34 8.06 -52.49 -0.42 0.91 16 48 H 0.10 0.89 7.95 -51.93 -0.41 0.48 16 49 H 0.10 1.01 8.11 -51.93 -0.42 0.59 16 LS Contribution 397.35 15.07 5.99 5.99 Total: -1.00 -34.53 397.35 -9.02 -43.55 By element: Atomic # 1 Polarization: 9.56 SS G_CDS: -7.97 Total: 1.60 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -1.15 Total: 8.52 kcal Atomic # 7 Polarization: -58.77 SS G_CDS: -0.58 Total: -59.35 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.27 Total: -17.45 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.03 Total: 17.15 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.53 -9.02 -43.55 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677313344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.054 kcal (2) G-P(sol) polarization free energy of solvation -34.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds