Wall clock time and date at job start Tue Mar 31 2020 19:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.42895 * 113.99975 * 2 1 4 4 C 1.52998 * 109.47352 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.46730 * 65.00241 * 4 3 2 6 6 C 1.36929 * 120.00049 * 270.00227 * 5 4 3 7 7 H 1.08008 * 120.00285 * 141.45627 * 6 5 4 8 8 C 1.38818 * 120.00229 * 321.45507 * 6 5 4 9 9 N 1.31620 * 119.99649 * 338.83515 * 8 6 5 10 10 Si 1.86797 * 120.00051 * 158.83309 * 8 6 5 11 11 H 1.48502 * 109.47238 * 90.00180 * 10 8 6 12 12 H 1.48506 * 109.46671 * 210.00161 * 10 8 6 13 13 H 1.48497 * 109.47234 * 329.99779 * 10 8 6 14 14 C 1.46495 * 119.99993 * 89.99927 * 5 4 3 15 15 C 1.53003 * 109.47593 * 264.71155 * 14 5 4 16 16 N 1.46495 * 109.47593 * 180.02562 * 15 14 5 17 17 C 1.34778 * 119.99950 * 180.02562 * 16 15 14 18 18 O 1.21277 * 120.00127 * 359.97438 * 17 16 15 19 19 C 1.50697 * 119.99642 * 180.02562 * 17 16 15 20 20 H 1.09004 * 109.54890 * 300.11015 * 19 17 16 21 21 C 1.53154 * 109.50678 * 179.97438 * 19 17 16 22 22 C 1.53265 * 109.49129 * 170.59393 * 21 19 17 23 23 N 1.46463 * 108.80233 * 50.37874 * 22 21 19 24 24 C 1.36309 * 127.77607 * 162.80433 * 23 22 21 25 25 C 1.34857 * 106.68948 * 180.09398 * 24 23 22 26 26 N 1.34292 * 108.06616 * 359.97438 * 25 24 23 27 27 C 1.30094 * 109.21704 * 359.97438 * 26 25 24 28 28 C 1.51036 * 127.38936 * 180.02562 * 27 26 25 29 29 H 1.09008 * 109.46867 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47495 * 299.99587 * 1 2 3 31 31 H 1.08997 * 109.47032 * 60.00316 * 1 2 3 32 32 H 1.09005 * 109.46699 * 60.00129 * 3 2 1 33 33 H 1.08994 * 109.47182 * 300.00425 * 3 2 1 34 34 H 1.08998 * 109.47455 * 305.00757 * 4 3 2 35 35 H 1.09000 * 109.47396 * 185.00043 * 4 3 2 36 36 H 0.96994 * 119.99994 * 179.97438 * 9 8 6 37 37 H 1.08996 * 109.47677 * 144.70806 * 14 5 4 38 38 H 1.09008 * 109.47463 * 24.70916 * 14 5 4 39 39 H 1.09007 * 109.46708 * 59.99603 * 15 14 5 40 40 H 1.08997 * 109.46764 * 300.00693 * 15 14 5 41 41 H 0.97002 * 119.99810 * 359.97438 * 16 15 14 42 42 H 1.08998 * 109.46337 * 290.59045 * 21 19 17 43 43 H 1.08992 * 109.46638 * 50.58698 * 21 19 17 44 44 H 1.08997 * 109.58061 * 170.17403 * 22 21 19 45 45 H 1.09001 * 109.57810 * 290.57862 * 22 21 19 46 46 H 1.08002 * 126.65432 * 0.07580 * 24 23 22 47 47 H 1.07996 * 125.96736 * 179.97438 * 25 24 23 48 48 H 1.08995 * 109.72009 * 44.36189 * 28 27 26 49 49 H 1.09005 * 109.71124 * 283.71542 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9766 0.5640 -1.2510 6 6 4.0978 -0.7973 -1.3346 7 1 3.8083 -1.3107 -2.2398 8 6 4.5925 -1.5178 -0.2561 9 7 5.3194 -0.9144 0.6604 10 14 4.2266 -3.3434 -0.1056 11 1 5.2896 -4.1196 -0.7931 12 1 4.1858 -3.7232 1.3295 13 1 2.9136 -3.6385 -0.7332 14 6 4.2882 1.3999 -2.4130 15 6 3.0607 1.4872 -3.3223 16 7 3.3725 2.3226 -4.4847 17 6 2.4347 2.5426 -5.4274 18 8 1.3329 2.0486 -5.3136 19 6 2.7556 3.4014 -6.6234 20 1 3.0345 4.4011 -6.2902 21 6 1.5274 3.4895 -7.5341 22 6 1.7708 4.5429 -8.6205 23 7 3.0644 4.2775 -9.2539 24 6 3.5218 4.7494 -10.4481 25 6 4.7585 4.2391 -10.6181 26 7 5.0443 3.4757 -9.5509 27 6 4.0361 3.4938 -8.7290 28 6 3.9202 2.7788 -7.4037 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.6886 1.8463 0.8901 33 1 1.6886 1.8463 -0.8899 34 1 3.8508 0.5685 0.8426 35 1 3.9785 2.1766 0.0902 36 1 5.6648 -1.4177 1.4142 37 1 5.1186 0.9599 -2.9650 38 1 4.5639 2.3999 -2.0780 39 1 2.2302 1.9274 -2.7703 40 1 2.7849 0.4874 -3.6573 41 1 4.2536 2.7180 -4.5755 42 1 1.3511 2.5204 -8.0008 43 1 0.6563 3.7719 -6.9429 44 1 0.9795 4.4863 -9.3680 45 1 1.7809 5.5357 -8.1708 46 1 2.9958 5.4046 -11.1266 47 1 5.4059 4.4138 -11.4647 48 1 4.8456 2.8966 -6.8401 49 1 3.7243 1.7199 -7.5732 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001677313344.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:31:47 Heat of formation + Delta-G solvation = -22.700483 kcal Electronic energy + Delta-G solvation = -29397.079722 eV Core-core repulsion = 25360.048805 eV Total energy + Delta-G solvation = -4037.030917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.195 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.26983 -40.94705 -38.93679 -37.55985 -37.08109 -35.69994 -34.34647 -33.30114 -31.13378 -30.78735 -29.88270 -28.76714 -27.15565 -26.05716 -25.45191 -24.07391 -23.01043 -22.34931 -22.17899 -21.18282 -20.02141 -18.73258 -18.08713 -17.98935 -17.42769 -16.99182 -16.83830 -16.55738 -16.49905 -16.32136 -15.67829 -15.56058 -15.24427 -15.12411 -15.07491 -14.77191 -14.70922 -14.55759 -14.16262 -13.76847 -13.57818 -13.41398 -13.01148 -12.92426 -12.83243 -12.70189 -12.47333 -12.39398 -12.35372 -12.21973 -12.17129 -11.94673 -11.69868 -11.53173 -10.98022 -10.89919 -10.52605 -10.44987 -10.35981 -10.01373 -9.27956 -8.52166 -7.78068 -5.38044 1.12074 1.45301 1.49182 1.56692 1.59413 1.87753 2.13399 2.17664 2.58310 3.18533 3.21146 3.35406 3.51158 3.52248 3.61026 3.79752 4.03323 4.11645 4.15903 4.24834 4.27197 4.33417 4.41906 4.49728 4.51958 4.58075 4.58196 4.63976 4.67661 4.71969 4.74163 4.81998 4.85744 4.90241 4.92042 4.96941 5.08532 5.14229 5.26179 5.37058 5.51630 5.72448 5.80028 5.87334 6.23509 6.47402 6.57339 6.65782 7.16796 7.23030 7.25878 7.90867 8.40135 9.19567 Molecular weight = 336.19amu Principal moments of inertia in cm(-1) A = 0.016787 B = 0.002444 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.535668 B =11453.733646 C =12295.114233 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.396 6.396 3 C 0.052 3.948 4 C 0.142 3.858 5 N -0.586 5.586 6 C -0.243 4.243 7 H 0.041 0.959 8 C -0.022 4.022 9 N -0.915 5.915 10 Si 0.945 3.055 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.282 1.282 14 C 0.141 3.859 15 C 0.119 3.881 16 N -0.710 5.710 17 C 0.517 3.483 18 O -0.582 6.582 19 C -0.096 4.096 20 H 0.130 0.870 21 C -0.114 4.114 22 C 0.106 3.894 23 N -0.456 5.456 24 C -0.040 4.040 25 C -0.063 4.063 26 N -0.529 5.529 27 C 0.191 3.809 28 C -0.021 4.021 29 H 0.081 0.919 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.048 0.952 33 H 0.037 0.963 34 H 0.066 0.934 35 H 0.061 0.939 36 H 0.249 0.751 37 H 0.048 0.952 38 H 0.067 0.933 39 H 0.048 0.952 40 H 0.031 0.969 41 H 0.415 0.585 42 H 0.064 0.936 43 H 0.104 0.896 44 H 0.117 0.883 45 H 0.112 0.888 46 H 0.212 0.788 47 H 0.183 0.817 48 H 0.111 0.889 49 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.714 17.079 -17.002 25.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.315 6.315 3 C -0.027 4.027 4 C 0.015 3.985 5 N -0.307 5.307 6 C -0.373 4.373 7 H 0.059 0.941 8 C -0.219 4.219 9 N -0.560 5.560 10 Si 0.774 3.226 11 H -0.211 1.211 12 H -0.219 1.219 13 H -0.207 1.207 14 C 0.015 3.985 15 C -0.008 4.008 16 N -0.362 5.362 17 C 0.304 3.696 18 O -0.462 6.462 19 C -0.118 4.118 20 H 0.148 0.852 21 C -0.152 4.152 22 C -0.015 4.015 23 N -0.139 5.139 24 C -0.174 4.174 25 C -0.210 4.210 26 N -0.249 5.249 27 C -0.071 4.071 28 C -0.060 4.060 29 H 0.099 0.901 30 H 0.068 0.932 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.055 0.945 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.059 0.941 37 H 0.066 0.934 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.050 0.950 41 H 0.251 0.749 42 H 0.083 0.917 43 H 0.122 0.878 44 H 0.135 0.865 45 H 0.130 0.870 46 H 0.228 0.772 47 H 0.200 0.800 48 H 0.129 0.871 49 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -7.700 16.101 -16.565 24.350 hybrid contribution -0.670 -0.588 0.125 0.900 sum -8.370 15.512 -16.440 24.103 Atomic orbital electron populations 1.22798 0.81787 1.02534 0.99867 1.88136 1.19387 1.28847 1.95160 1.23341 0.97021 0.83953 0.98346 1.21017 0.89419 0.96619 0.91409 1.43664 1.76046 1.02392 1.08569 1.18828 1.34901 0.83200 1.00414 0.94091 1.25552 0.96653 1.00508 0.99177 1.70069 1.34954 1.36728 1.14236 0.85653 0.77899 0.82598 0.76441 1.21122 1.21878 1.20730 1.21045 0.93524 0.95276 0.88700 1.21875 0.99840 0.92938 0.86114 1.45946 1.16466 1.51273 1.22509 1.20842 0.84021 0.80780 0.83951 1.90702 1.24412 1.52382 1.78727 1.21375 0.96976 1.00837 0.92589 0.85179 1.21695 0.97873 0.99725 0.95918 1.22256 0.82307 1.00580 0.96316 1.45669 1.15177 1.36283 1.16775 1.23138 0.97917 1.06117 0.90242 1.22809 0.97274 1.01574 0.99385 1.69995 1.27556 1.22629 1.04716 1.23197 0.86136 0.99137 0.98646 1.20084 0.99390 0.98370 0.88166 0.90066 0.93190 0.94522 0.93379 0.94510 0.91636 0.92048 0.94135 0.93369 0.91443 0.93370 0.95016 0.74851 0.91688 0.87767 0.86466 0.87025 0.77169 0.79959 0.87082 0.90030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.89 11.01 113.37 1.25 2.14 16 2 O -0.40 -17.47 10.18 -148.98 -1.52 -18.98 16 3 C 0.05 2.03 6.28 71.98 0.45 2.49 16 4 C 0.14 6.33 5.76 86.38 0.50 6.82 16 5 N -0.59 -27.72 2.41 -701.99 -1.69 -29.41 16 6 C -0.24 -13.24 8.95 84.04 0.75 -12.49 16 7 H 0.04 2.32 7.92 -2.91 -0.02 2.30 16 8 C -0.02 -1.21 4.95 84.86 0.42 -0.79 16 9 N -0.92 -52.96 11.53 21.65 0.25 -52.71 16 10 Si 0.94 46.43 29.60 68.60 2.03 48.46 16 11 H -0.28 -13.61 7.11 99.48 0.71 -12.91 16 12 H -0.29 -14.34 7.11 99.48 0.71 -13.63 16 13 H -0.28 -13.90 7.11 99.48 0.71 -13.19 16 14 C 0.14 5.25 5.83 86.38 0.50 5.76 16 15 C 0.12 4.11 5.97 86.38 0.52 4.63 16 16 N -0.71 -17.86 5.46 -463.06 -2.53 -20.39 16 17 C 0.52 13.08 7.13 87.66 0.63 13.70 16 18 O -0.58 -20.01 15.83 -3.02 -0.05 -20.06 16 19 C -0.10 -1.57 2.55 -11.36 -0.03 -1.60 16 20 H 0.13 1.49 8.12 -2.39 -0.02 1.47 16 21 C -0.11 -1.64 4.67 30.73 0.14 -1.50 16 22 C 0.11 0.97 6.98 86.48 0.60 1.57 16 23 N -0.46 -7.12 3.13 -513.85 -1.61 -8.73 16 24 C -0.04 -0.57 11.64 83.22 0.97 0.40 16 25 C -0.06 -1.24 11.87 83.54 0.99 -0.25 16 26 N -0.53 -13.59 11.24 -187.52 -2.11 -15.70 16 27 C 0.19 4.07 7.65 138.23 1.06 5.13 16 28 C -0.02 -0.39 5.47 30.09 0.16 -0.22 16 29 H 0.08 2.52 8.14 -2.38 -0.02 2.50 16 30 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 33 H 0.04 1.37 6.48 -2.39 -0.02 1.35 16 34 H 0.07 3.48 5.58 -2.39 -0.01 3.47 16 35 H 0.06 2.42 7.86 -2.39 -0.02 2.40 16 36 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 37 H 0.05 1.84 8.08 -2.39 -0.02 1.82 16 38 H 0.07 2.15 7.83 -2.38 -0.02 2.13 16 39 H 0.05 1.78 6.48 -2.38 -0.02 1.76 16 40 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 41 H 0.41 7.71 8.20 -92.71 -0.76 6.95 16 42 H 0.06 1.18 8.12 -2.39 -0.02 1.16 16 43 H 0.10 1.49 7.79 -2.39 -0.02 1.47 16 44 H 0.12 0.59 8.14 -2.39 -0.02 0.57 16 45 H 0.11 0.55 8.14 -2.39 -0.02 0.53 16 46 H 0.21 1.20 8.06 -2.91 -0.02 1.17 16 47 H 0.18 2.70 8.06 -2.91 -0.02 2.68 16 48 H 0.11 1.81 7.95 -2.39 -0.02 1.79 16 49 H 0.08 1.73 8.11 -2.38 -0.02 1.72 16 Total: -1.00 -77.37 397.35 1.88 -75.49 By element: Atomic # 1 Polarization: 16.05 SS G_CDS: 0.19 Total: 16.24 kcal Atomic # 6 Polarization: 16.87 SS G_CDS: 8.92 Total: 25.79 kcal Atomic # 7 Polarization: -119.24 SS G_CDS: -7.69 Total: -126.93 kcal Atomic # 8 Polarization: -37.48 SS G_CDS: -1.56 Total: -39.04 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 2.03 Total: 48.46 kcal Total: -77.37 1.88 -75.49 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001677313344.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.785 kcal (2) G-P(sol) polarization free energy of solvation -77.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.882 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.700 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds