Wall clock time and date at job start Tue Mar 31 2020 19:48:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47377 * 2 1 4 4 C 1.50707 * 109.47043 * 119.99558 * 2 1 3 5 5 N 1.30718 * 125.52275 * 299.69557 * 4 2 1 6 6 N 1.40440 * 106.78926 * 179.85617 * 5 4 2 7 7 H 0.97005 * 126.82589 * 180.15399 * 6 5 4 8 8 C 1.34433 * 106.35599 * 0.40084 * 6 5 4 9 9 C 1.50695 * 125.96149 * 179.77848 * 8 6 5 10 10 N 1.46506 * 109.47066 * 94.97587 * 9 8 6 11 11 C 1.34783 * 119.99949 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99726 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00099 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.53046 * 109.45962 * 275.02624 * 14 13 11 16 16 C 1.53193 * 109.31223 * 178.60205 * 15 14 13 17 17 N 1.46924 * 108.76627 * 54.65370 * 16 15 14 18 18 C 1.36942 * 120.62887 * 126.40726 * 17 16 15 19 19 H 1.08003 * 119.99804 * 331.82452 * 18 17 16 20 20 C 1.38807 * 120.00033 * 151.82802 * 18 17 16 21 21 N 1.31618 * 119.99854 * 343.06371 * 20 18 17 22 22 Si 1.86798 * 120.00073 * 163.06841 * 20 18 17 23 23 H 1.48492 * 109.47116 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47090 * 119.99951 * 22 20 18 25 25 H 1.48503 * 109.47000 * 239.99814 * 22 20 18 26 26 C 1.46922 * 118.74039 * 306.38371 * 17 16 15 27 27 C 1.53038 * 109.46220 * 154.97018 * 14 13 11 28 28 N 1.30827 * 108.07304 * 359.75337 * 8 6 5 29 29 H 1.09005 * 109.46983 * 60.00381 * 1 2 3 30 30 H 1.09004 * 109.47393 * 300.00706 * 1 2 3 31 31 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47476 * 239.99449 * 2 1 3 33 33 H 1.08995 * 109.47268 * 59.99321 * 3 2 1 34 34 H 1.09004 * 109.47295 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46379 * 299.99379 * 3 2 1 36 36 H 1.09004 * 109.47138 * 214.96976 * 9 8 6 37 37 H 1.09001 * 109.47487 * 334.97401 * 9 8 6 38 38 H 0.96999 * 119.99821 * 359.97438 * 10 9 8 39 39 H 0.97008 * 119.99921 * 359.97438 * 13 11 10 40 40 H 1.08999 * 109.46412 * 34.99599 * 14 13 11 41 41 H 1.09005 * 109.49098 * 298.56752 * 15 14 13 42 42 H 1.08994 * 109.49598 * 58.65737 * 15 14 13 43 43 H 1.08996 * 109.59481 * 294.86148 * 16 15 14 44 44 H 1.09001 * 109.69970 * 174.50358 * 16 15 14 45 45 H 0.96997 * 120.00011 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.58472 * 293.82212 * 26 17 16 47 47 H 1.08999 * 109.70517 * 173.46806 * 26 17 16 48 48 H 1.08998 * 109.50037 * 301.33787 * 27 14 13 49 49 H 1.09000 * 109.49876 * 61.40147 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7885 -0.3558 2.4649 6 7 2.4398 -1.2867 3.2905 7 1 2.4478 -1.2980 4.2605 8 6 3.0544 -2.1559 2.4696 9 6 3.8886 -3.3365 2.8951 10 7 3.0548 -4.5409 2.9176 11 6 3.5916 -5.7257 3.2708 12 8 4.7678 -5.7949 3.5711 13 7 2.8245 -6.8336 3.2920 14 6 3.4078 -8.1213 3.6763 15 6 4.0580 -8.7719 2.4531 16 6 4.6971 -10.1015 2.8661 17 7 3.6778 -10.9326 3.5211 18 6 3.4320 -12.2075 3.0858 19 1 3.6069 -12.4685 2.0525 20 6 2.9580 -13.1643 3.9727 21 7 3.0563 -12.9653 5.2700 22 14 2.1806 -14.7345 3.3249 23 1 2.1897 -14.7154 1.8401 24 1 2.9533 -15.9061 3.8101 25 1 0.7802 -14.8301 3.8097 26 6 2.9276 -10.3700 4.6521 27 6 2.3086 -9.0372 4.2193 28 7 2.8014 -1.7982 1.2369 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 0.5140 0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 4.7083 -3.4753 2.1900 37 1 4.2928 -3.1558 3.8912 38 1 2.1164 -4.4856 2.6784 39 1 1.8858 -6.7782 3.0535 40 1 4.1620 -7.9628 4.4471 41 1 3.2995 -8.9535 1.6915 42 1 4.8247 -8.1087 2.0527 43 1 5.5163 -9.9133 3.5600 44 1 5.0767 -10.6165 1.9836 45 1 2.7254 -13.6341 5.8897 46 1 3.6026 -10.2038 5.4918 47 1 2.1380 -11.0603 4.9492 48 1 1.8301 -8.5630 5.0761 49 1 1.5666 -9.2160 3.4411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001684057612.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:18 Heat of formation + Delta-G solvation = 65.479601 kcal Electronic energy + Delta-G solvation = -28457.397517 eV Core-core repulsion = 24456.483126 eV Total energy + Delta-G solvation = -4000.914391 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.69145 -40.03875 -37.58788 -36.33654 -35.01691 -34.37427 -32.67907 -32.23445 -31.25785 -30.09561 -29.35629 -27.59591 -27.13391 -24.85564 -24.19185 -22.34419 -22.05580 -21.45463 -20.72677 -20.07274 -19.47925 -18.73177 -18.01182 -16.91362 -16.52985 -15.81795 -15.53878 -15.28744 -15.07428 -14.85636 -14.52284 -14.35764 -13.83956 -13.79877 -13.55082 -13.48686 -13.37054 -12.95867 -12.65225 -12.61903 -12.37550 -12.32514 -11.96405 -11.71338 -11.45288 -11.41188 -11.12758 -10.86907 -10.73548 -10.54614 -10.49218 -10.47650 -10.29314 -10.23224 -10.03220 -9.94853 -9.75499 -9.54964 -9.39094 -8.66115 -8.45382 -6.68277 -5.79868 -3.21838 0.97974 2.07539 2.27717 2.85664 3.23864 3.36516 3.38615 3.44816 3.47114 4.05527 4.18736 4.26998 4.49462 4.59837 4.67928 4.85024 5.06050 5.20146 5.21110 5.33631 5.38748 5.39780 5.41195 5.50378 5.50452 5.60914 5.77195 5.78254 5.78854 5.88505 6.00602 6.08510 6.11023 6.28412 6.33609 6.46179 6.52121 6.57297 6.60311 6.79221 6.83959 6.97061 7.05452 7.31520 7.61311 7.61940 7.79830 8.01545 8.44547 8.62468 9.20771 9.84003 10.40962 11.29123 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025910 B = 0.001785 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.422410 B =15678.435680 C =16058.465631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 C -0.143 4.143 4 C 0.233 3.767 5 N -0.303 5.303 6 N -0.472 5.472 7 H 0.443 0.557 8 C 0.270 3.730 9 C 0.222 3.778 10 N -0.749 5.749 11 C 0.707 3.293 12 O -0.586 6.586 13 N -0.735 5.735 14 C 0.169 3.831 15 C -0.140 4.140 16 C 0.147 3.853 17 N -0.593 5.593 18 C -0.250 4.250 19 H 0.066 0.934 20 C 0.001 3.999 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.290 1.290 25 H -0.289 1.289 26 C 0.175 3.825 27 C -0.146 4.146 28 N -0.519 5.519 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.057 0.943 35 H 0.068 0.932 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.398 0.602 39 H 0.392 0.608 40 H 0.082 0.918 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.021 0.979 44 H 0.056 0.944 45 H 0.253 0.747 46 H 0.021 0.979 47 H 0.091 0.909 48 H 0.053 0.947 49 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.991 27.295 -6.264 28.446 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.024 4.024 3 C -0.202 4.202 4 C -0.050 4.050 5 N -0.132 5.132 6 N -0.190 5.190 7 H 0.289 0.711 8 C -0.009 4.009 9 C 0.095 3.905 10 N -0.407 5.407 11 C 0.407 3.593 12 O -0.464 6.464 13 N -0.388 5.388 14 C 0.065 3.935 15 C -0.180 4.180 16 C 0.020 3.980 17 N -0.315 5.315 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.197 4.197 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.217 1.217 25 H -0.216 1.216 26 C 0.048 3.952 27 C -0.186 4.186 28 N -0.248 5.248 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.231 0.769 39 H 0.225 0.775 40 H 0.101 0.899 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.039 0.961 44 H 0.074 0.926 45 H 0.063 0.937 46 H 0.039 0.961 47 H 0.110 0.890 48 H 0.072 0.928 49 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -4.225 27.538 -5.988 28.497 hybrid contribution -1.222 -0.858 0.307 1.524 sum -5.447 26.680 -5.681 27.817 Atomic orbital electron populations 1.21832 0.93100 1.02483 1.02764 1.19573 0.96212 0.95269 0.91333 1.21832 1.01383 0.94186 1.02759 1.24322 0.94800 0.92163 0.93719 1.77993 1.19794 1.13167 1.02264 1.48089 1.38895 1.21370 1.10684 0.71071 1.24282 0.95777 0.94466 0.86372 1.19403 0.90751 0.77344 1.03014 1.44970 1.13561 1.06491 1.75727 1.15877 0.85258 0.79916 0.78293 1.90949 1.14607 1.85189 1.55632 1.45545 1.12802 1.07514 1.72983 1.20953 0.96086 0.79388 0.97067 1.22399 0.99960 0.98359 0.97307 1.20882 0.91019 0.89758 0.96308 1.44102 1.39094 1.11860 1.36493 1.19240 1.39793 0.85880 0.93098 0.91586 1.25053 1.01973 0.97526 0.95177 1.70032 1.48837 1.35352 1.00582 0.86230 0.78926 0.83302 0.78371 1.20260 1.21729 1.21616 1.20738 0.95864 0.89782 0.88824 1.22552 0.97466 0.98679 0.99943 1.70432 1.19269 1.14947 1.20169 0.91321 0.91909 0.92366 0.88244 0.91899 0.92405 0.91337 0.87599 0.89077 0.76882 0.77512 0.89947 0.92401 0.92589 0.96132 0.92550 0.93674 0.96070 0.89039 0.92799 0.92205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.18 37.16 0.34 -0.53 16 2 C 0.00 -0.02 3.39 -91.77 -0.31 -0.33 16 3 C -0.14 -0.85 9.18 37.16 0.34 -0.51 16 4 C 0.23 2.27 6.65 -156.85 -1.04 1.23 16 5 N -0.30 -2.94 12.80 32.42 0.41 -2.53 16 6 N -0.47 -3.62 7.45 32.62 0.24 -3.37 16 7 H 0.44 2.06 8.96 -182.33 -1.63 0.43 16 8 C 0.27 2.37 7.60 -155.70 -1.18 1.19 16 9 C 0.22 1.91 6.30 -5.19 -0.03 1.88 16 10 N -0.75 -7.28 5.55 -66.41 -0.37 -7.65 16 11 C 0.71 9.76 8.53 -86.92 -0.74 9.02 16 12 O -0.59 -10.44 16.01 5.28 0.08 -10.36 16 13 N -0.74 -9.86 5.08 -58.64 -0.30 -10.16 16 14 C 0.17 2.86 2.42 -67.89 -0.16 2.70 16 15 C -0.14 -2.54 5.65 -26.61 -0.15 -2.69 16 16 C 0.15 3.15 6.52 -3.71 -0.02 3.13 16 17 N -0.59 -14.67 2.99 -172.32 -0.52 -15.18 16 18 C -0.25 -6.80 9.58 -15.06 -0.14 -6.94 16 19 H 0.07 1.77 7.89 -52.48 -0.41 1.36 16 20 C 0.00 0.03 4.92 -17.43 -0.09 -0.06 16 21 N -0.90 -25.90 11.19 55.49 0.62 -25.28 16 22 Si 0.90 21.45 29.59 -169.99 -5.03 16.42 16 23 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 24 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 26 C 0.17 4.04 5.30 -3.71 -0.02 4.02 16 27 C -0.15 -2.61 5.55 -26.61 -0.15 -2.76 16 28 N -0.52 -5.56 11.19 -8.16 -0.09 -5.65 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 35 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.11 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.24 16 38 H 0.40 3.19 8.48 -40.82 -0.35 2.84 16 39 H 0.39 4.20 8.62 -40.82 -0.35 3.85 16 40 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 41 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 42 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 43 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 44 H 0.06 1.18 7.93 -51.93 -0.41 0.77 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.02 0.52 8.14 -51.92 -0.42 0.10 16 47 H 0.09 2.36 6.07 -51.93 -0.31 2.04 16 48 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 399.87 15.07 6.03 6.03 Total: -1.00 -33.63 399.87 -11.62 -45.25 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -9.34 Total: 3.14 kcal Atomic # 6 Polarization: 12.70 SS G_CDS: -3.37 Total: 9.34 kcal Atomic # 7 Polarization: -69.82 SS G_CDS: 0.01 Total: -69.82 kcal Atomic # 8 Polarization: -10.44 SS G_CDS: 0.08 Total: -10.36 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -33.63 -11.62 -45.25 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684057612.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.733 kcal (2) G-P(sol) polarization free energy of solvation -33.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.253 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds