Wall clock time and date at job start Tue Mar 31 2020 19:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53000 * 109.47377 * 2 1 4 4 C 1.50707 * 109.47043 * 119.99558 * 2 1 3 5 5 N 1.30718 * 125.52275 * 299.69557 * 4 2 1 6 6 N 1.40440 * 106.78926 * 179.85617 * 5 4 2 7 7 H 0.97005 * 126.82589 * 180.15399 * 6 5 4 8 8 C 1.34433 * 106.35599 * 0.40084 * 6 5 4 9 9 C 1.50695 * 125.96149 * 179.77848 * 8 6 5 10 10 N 1.46506 * 109.47066 * 94.97587 * 9 8 6 11 11 C 1.34783 * 119.99949 * 179.97438 * 10 9 8 12 12 O 1.21592 * 119.99726 * 0.02562 * 11 10 9 13 13 N 1.34767 * 120.00099 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00209 * 180.02562 * 13 11 10 15 15 C 1.53046 * 109.45962 * 275.02624 * 14 13 11 16 16 C 1.53193 * 109.31223 * 178.60205 * 15 14 13 17 17 N 1.46924 * 108.76627 * 54.65370 * 16 15 14 18 18 C 1.36942 * 120.62887 * 126.40726 * 17 16 15 19 19 H 1.08003 * 119.99804 * 331.82452 * 18 17 16 20 20 C 1.38807 * 120.00033 * 151.82802 * 18 17 16 21 21 N 1.31618 * 119.99854 * 343.06371 * 20 18 17 22 22 Si 1.86798 * 120.00073 * 163.06841 * 20 18 17 23 23 H 1.48492 * 109.47116 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47090 * 119.99951 * 22 20 18 25 25 H 1.48503 * 109.47000 * 239.99814 * 22 20 18 26 26 C 1.46922 * 118.74039 * 306.38371 * 17 16 15 27 27 C 1.53038 * 109.46220 * 154.97018 * 14 13 11 28 28 N 1.30827 * 108.07304 * 359.75337 * 8 6 5 29 29 H 1.09005 * 109.46983 * 60.00381 * 1 2 3 30 30 H 1.09004 * 109.47393 * 300.00706 * 1 2 3 31 31 H 1.08996 * 109.47406 * 180.02562 * 1 2 3 32 32 H 1.08995 * 109.47476 * 239.99449 * 2 1 3 33 33 H 1.08995 * 109.47268 * 59.99321 * 3 2 1 34 34 H 1.09004 * 109.47295 * 180.02562 * 3 2 1 35 35 H 1.09006 * 109.46379 * 299.99379 * 3 2 1 36 36 H 1.09004 * 109.47138 * 214.96976 * 9 8 6 37 37 H 1.09001 * 109.47487 * 334.97401 * 9 8 6 38 38 H 0.96999 * 119.99821 * 359.97438 * 10 9 8 39 39 H 0.97008 * 119.99921 * 359.97438 * 13 11 10 40 40 H 1.08999 * 109.46412 * 34.99599 * 14 13 11 41 41 H 1.09005 * 109.49098 * 298.56752 * 15 14 13 42 42 H 1.08994 * 109.49598 * 58.65737 * 15 14 13 43 43 H 1.08996 * 109.59481 * 294.86148 * 16 15 14 44 44 H 1.09001 * 109.69970 * 174.50358 * 16 15 14 45 45 H 0.96997 * 120.00011 * 180.02562 * 21 20 18 46 46 H 1.09007 * 109.58472 * 293.82212 * 26 17 16 47 47 H 1.08999 * 109.70517 * 173.46806 * 26 17 16 48 48 H 1.08998 * 109.50037 * 301.33787 * 27 14 13 49 49 H 1.09000 * 109.49876 * 61.40147 * 27 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2306 5 7 1.7885 -0.3558 2.4649 6 7 2.4398 -1.2867 3.2905 7 1 2.4478 -1.2980 4.2605 8 6 3.0544 -2.1559 2.4696 9 6 3.8886 -3.3365 2.8951 10 7 3.0548 -4.5409 2.9176 11 6 3.5916 -5.7257 3.2708 12 8 4.7678 -5.7949 3.5711 13 7 2.8245 -6.8336 3.2920 14 6 3.4078 -8.1213 3.6763 15 6 4.0580 -8.7719 2.4531 16 6 4.6971 -10.1015 2.8661 17 7 3.6778 -10.9326 3.5211 18 6 3.4320 -12.2075 3.0858 19 1 3.6069 -12.4685 2.0525 20 6 2.9580 -13.1643 3.9727 21 7 3.0563 -12.9653 5.2700 22 14 2.1806 -14.7345 3.3249 23 1 2.1897 -14.7154 1.8401 24 1 2.9533 -15.9061 3.8101 25 1 0.7802 -14.8301 3.8097 26 6 2.9276 -10.3700 4.6521 27 6 2.3086 -9.0372 4.2193 28 7 2.8014 -1.7982 1.2369 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 0.5140 0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.8933 -0.5139 -0.8899 33 1 1.6766 1.9564 0.8899 34 1 3.1301 1.4425 -0.0005 35 1 1.6767 1.9562 -0.8901 36 1 4.7083 -3.4753 2.1900 37 1 4.2928 -3.1558 3.8912 38 1 2.1164 -4.4856 2.6784 39 1 1.8858 -6.7782 3.0535 40 1 4.1620 -7.9628 4.4471 41 1 3.2995 -8.9535 1.6915 42 1 4.8247 -8.1087 2.0527 43 1 5.5163 -9.9133 3.5600 44 1 5.0767 -10.6165 1.9836 45 1 2.7254 -13.6341 5.8897 46 1 3.6026 -10.2038 5.4918 47 1 2.1380 -11.0603 4.9492 48 1 1.8301 -8.5630 5.0761 49 1 1.5666 -9.2160 3.4411 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001684057612.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:48:17 Heat of formation + Delta-G solvation = 41.899600 kcal Electronic energy + Delta-G solvation = -28458.420023 eV Core-core repulsion = 24456.483126 eV Total energy + Delta-G solvation = -4001.936896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.38086 -41.19358 -39.13021 -36.99381 -36.11593 -35.70886 -33.92750 -33.35906 -32.25906 -31.65407 -30.97073 -28.08967 -28.05139 -26.63389 -24.80341 -23.96690 -23.64701 -22.20424 -21.89184 -21.03971 -20.68716 -19.68956 -19.04366 -18.53288 -17.66448 -16.88056 -16.67260 -16.45151 -15.94383 -15.85446 -15.80555 -15.35941 -15.29744 -15.09589 -14.81259 -14.70680 -14.35185 -14.05580 -13.98137 -13.96239 -13.20824 -13.09958 -13.05002 -13.00114 -12.61585 -12.49799 -12.45969 -12.21203 -12.20435 -11.97881 -11.93083 -11.84403 -11.55494 -11.44665 -11.27180 -11.19616 -11.18161 -10.69218 -10.55410 -10.40553 -9.80533 -8.68820 -7.86700 -5.31938 0.27575 1.37495 1.48138 1.50338 1.56858 1.60862 1.95423 2.14159 2.52933 2.72292 3.24211 3.32234 3.44153 3.56808 3.69240 3.93139 4.05308 4.09905 4.18551 4.29542 4.37801 4.46697 4.48631 4.50400 4.68377 4.79562 4.83833 4.88477 4.88744 4.94281 5.00086 5.04331 5.10251 5.13598 5.18883 5.23696 5.24468 5.32581 5.33351 5.42709 5.49660 5.59980 5.66665 5.72041 5.92338 5.99878 6.40730 6.93691 7.03391 7.16255 7.55133 7.85981 8.38493 9.20469 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.025910 B = 0.001785 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.422410 B =15678.435680 C =16058.465631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.006 4.006 3 C -0.138 4.138 4 C 0.223 3.777 5 N -0.318 5.318 6 N -0.460 5.460 7 H 0.456 0.544 8 C 0.276 3.724 9 C 0.226 3.774 10 N -0.730 5.730 11 C 0.709 3.291 12 O -0.626 6.626 13 N -0.724 5.724 14 C 0.182 3.818 15 C -0.125 4.125 16 C 0.144 3.856 17 N -0.609 5.609 18 C -0.261 4.261 19 H 0.067 0.933 20 C -0.050 4.050 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.267 1.267 24 H -0.294 1.294 25 H -0.288 1.288 26 C 0.178 3.822 27 C -0.128 4.128 28 N -0.546 5.546 29 H 0.088 0.912 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.101 0.899 33 H 0.056 0.944 34 H 0.049 0.951 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.108 0.892 38 H 0.409 0.591 39 H 0.409 0.591 40 H 0.061 0.939 41 H 0.064 0.936 42 H 0.060 0.940 43 H 0.009 0.991 44 H 0.056 0.944 45 H 0.250 0.750 46 H -0.004 1.004 47 H 0.062 0.938 48 H 0.077 0.923 49 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.333 28.837 -7.452 30.450 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.027 4.027 3 C -0.196 4.196 4 C -0.059 4.059 5 N -0.147 5.147 6 N -0.180 5.180 7 H 0.305 0.695 8 C -0.004 4.004 9 C 0.099 3.901 10 N -0.388 5.388 11 C 0.408 3.592 12 O -0.507 6.507 13 N -0.379 5.379 14 C 0.077 3.923 15 C -0.165 4.165 16 C 0.018 3.982 17 N -0.332 5.332 18 C -0.391 4.391 19 H 0.084 0.916 20 C -0.245 4.245 21 N -0.581 5.581 22 Si 0.796 3.204 23 H -0.191 1.191 24 H -0.222 1.222 25 H -0.215 1.215 26 C 0.052 3.948 27 C -0.168 4.168 28 N -0.276 5.276 29 H 0.107 0.893 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.119 0.881 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.126 0.874 38 H 0.245 0.755 39 H 0.245 0.755 40 H 0.079 0.921 41 H 0.083 0.917 42 H 0.079 0.921 43 H 0.027 0.973 44 H 0.075 0.925 45 H 0.060 0.940 46 H 0.014 0.986 47 H 0.081 0.919 48 H 0.096 0.904 49 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -5.612 29.142 -7.190 30.536 hybrid contribution -0.737 -1.278 0.686 1.627 sum -6.349 27.864 -6.504 29.309 Atomic orbital electron populations 1.21791 0.92242 1.02125 1.03415 1.19731 0.96887 0.95681 0.90437 1.21793 1.00816 0.93529 1.03433 1.24796 0.94574 0.92061 0.94465 1.77958 1.20389 1.13853 1.02538 1.48030 1.38060 1.20610 1.11297 0.69505 1.24144 0.95610 0.94435 0.86199 1.19436 0.90210 0.76636 1.03796 1.44725 1.14174 1.05582 1.74348 1.15905 0.84609 0.80643 0.78004 1.90935 1.16482 1.85882 1.57388 1.45120 1.13585 1.06242 1.72916 1.20509 0.95241 0.80695 0.95878 1.22195 1.00043 0.96430 0.97822 1.20973 0.90426 0.91075 0.95728 1.44354 1.40255 1.11792 1.36846 1.19549 1.39332 0.87044 0.93214 0.91551 1.25795 1.02790 1.00576 0.95356 1.70184 1.49990 1.36311 1.01646 0.85208 0.77666 0.79345 0.78219 1.19138 1.22165 1.21472 1.20570 0.94491 0.91778 0.87986 1.22258 0.97405 0.95970 1.01128 1.70419 1.20130 1.15771 1.21250 0.89348 0.92548 0.93184 0.88085 0.92532 0.93202 0.89319 0.88366 0.87384 0.75483 0.75475 0.92121 0.91731 0.92120 0.97327 0.92530 0.94050 0.98594 0.91931 0.90419 0.91263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.18 71.98 0.66 -0.81 16 2 C -0.01 -0.08 3.39 -11.54 -0.04 -0.12 16 3 C -0.14 -1.45 9.18 71.98 0.66 -0.79 16 4 C 0.22 4.12 6.65 138.63 0.92 5.04 16 5 N -0.32 -5.76 12.80 -51.33 -0.66 -6.41 16 6 N -0.46 -6.26 7.45 -50.71 -0.38 -6.63 16 7 H 0.46 3.34 8.96 -213.09 -1.91 1.43 16 8 C 0.28 4.38 7.60 138.22 1.05 5.43 16 9 C 0.23 3.46 6.30 85.63 0.54 4.00 16 10 N -0.73 -12.50 5.55 -482.28 -2.68 -15.18 16 11 C 0.71 18.14 8.53 179.06 1.53 19.67 16 12 O -0.63 -21.57 16.01 -4.01 -0.06 -21.64 16 13 N -0.72 -17.69 5.08 -457.69 -2.33 -20.01 16 14 C 0.18 5.94 2.42 45.02 0.11 6.05 16 15 C -0.12 -4.37 5.65 30.67 0.17 -4.20 16 16 C 0.14 6.19 6.52 86.36 0.56 6.75 16 17 N -0.61 -30.44 2.99 -699.10 -2.09 -32.53 16 18 C -0.26 -14.27 9.58 84.03 0.81 -13.46 16 19 H 0.07 3.55 7.89 -2.91 -0.02 3.53 16 20 C -0.05 -2.76 4.92 84.86 0.42 -2.34 16 21 N -0.94 -54.79 11.19 21.65 0.24 -54.54 16 22 Si 0.97 44.36 29.59 68.60 2.03 46.38 16 23 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 24 H -0.29 -13.61 7.11 99.48 0.71 -12.91 16 25 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 26 C 0.18 8.36 5.30 86.36 0.46 8.81 16 27 C -0.13 -4.39 5.55 30.67 0.17 -4.22 16 28 N -0.55 -11.00 11.19 -179.73 -2.01 -13.01 16 29 H 0.09 0.57 8.14 -2.38 -0.02 0.56 16 30 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 31 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 32 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 34 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.09 0.56 8.14 -2.38 -0.02 0.54 16 36 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 37 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.41 5.39 8.48 -92.71 -0.79 4.60 16 39 H 0.41 7.41 8.62 -92.70 -0.80 6.61 16 40 H 0.06 2.30 7.58 -2.39 -0.02 2.28 16 41 H 0.06 2.20 8.14 -2.38 -0.02 2.18 16 42 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 43 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 44 H 0.06 2.38 7.93 -2.39 -0.02 2.36 16 45 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 46 H 0.00 -0.21 8.14 -2.38 -0.02 -0.23 16 47 H 0.06 3.30 6.07 -2.39 -0.01 3.28 16 48 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 49 H 0.07 2.28 8.14 -2.39 -0.02 2.26 16 Total: -1.00 -73.23 399.87 -2.43 -75.66 By element: Atomic # 1 Polarization: 20.61 SS G_CDS: -2.51 Total: 18.10 kcal Atomic # 6 Polarization: 21.80 SS G_CDS: 8.02 Total: 29.82 kcal Atomic # 7 Polarization: -138.43 SS G_CDS: -9.90 Total: -148.33 kcal Atomic # 8 Polarization: -21.57 SS G_CDS: -0.06 Total: -21.64 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 2.03 Total: 46.38 kcal Total: -73.23 -2.43 -75.66 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001684057612.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.557 kcal (2) G-P(sol) polarization free energy of solvation -73.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.657 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds