Wall clock time and date at job start Tue Mar 31 2020 19:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46840 * 89.97721 * 9 8 7 11 11 O 1.21276 * 120.00077 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99790 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00256 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47495 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47292 * 295.00670 * 14 13 12 16 16 N 1.46501 * 109.47152 * 55.00415 * 14 13 12 17 17 C 1.36932 * 120.00151 * 205.00352 * 16 14 13 18 18 H 1.08004 * 120.00001 * 359.97438 * 17 16 14 19 19 C 1.38813 * 119.99979 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00018 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00159 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47198 * 89.99889 * 21 19 17 23 23 H 1.48497 * 109.47245 * 210.00605 * 21 19 17 24 24 H 1.48505 * 109.47017 * 330.00156 * 21 19 17 25 25 C 1.52997 * 109.47318 * 175.00290 * 14 13 12 26 26 C 1.53002 * 117.49693 * 248.74983 * 25 14 13 27 27 C 1.52999 * 117.50276 * 180.08966 * 25 14 13 28 28 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 39 39 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 40 40 H 0.97004 * 120.00075 * 0.02562 * 12 10 9 41 41 H 1.08997 * 109.47410 * 300.00392 * 13 12 10 42 42 H 1.09005 * 109.46892 * 60.00267 * 13 12 10 43 43 H 0.97005 * 120.00083 * 24.99152 * 16 14 13 44 44 H 0.97002 * 119.99917 * 180.02562 * 20 19 17 45 45 H 1.08999 * 115.55332 * 34.41725 * 25 14 13 46 46 H 1.08992 * 117.50032 * 359.97438 * 26 25 14 47 47 H 1.09008 * 117.49740 * 145.02257 * 26 25 14 48 48 H 1.08997 * 117.50456 * 214.98334 * 27 25 14 49 49 H 1.09008 * 117.49494 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 6 4.9546 -0.8609 -4.3372 11 8 4.3057 0.1611 -4.4097 12 7 6.0447 -1.0234 -5.1129 13 6 6.4455 0.0343 -6.0440 14 6 7.7047 -0.3994 -6.7970 15 1 8.5331 -0.4948 -6.0950 16 7 7.4647 -1.6900 -7.4474 17 6 8.5167 -2.5186 -7.7336 18 1 9.5234 -2.2205 -7.4802 19 6 8.2892 -3.7417 -8.3494 20 7 9.3003 -4.5379 -8.6249 21 14 6.5479 -4.2576 -8.7870 22 1 6.2222 -3.7879 -10.1576 23 1 6.4417 -5.7377 -8.7326 24 1 5.5956 -3.6571 -7.8186 25 6 8.0519 0.6487 -7.8562 26 6 7.8866 0.2510 -9.3244 27 6 9.2869 0.3950 -8.7230 28 7 3.2573 -0.8636 -1.5060 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 5.3468 -2.1309 -2.6676 39 1 4.3358 -2.8636 -3.9362 40 1 6.5635 -1.8410 -5.0552 41 1 5.6404 0.2159 -6.7560 42 1 6.6520 0.9488 -5.4880 43 1 6.5606 -1.9576 -7.6752 44 1 9.1414 -5.3925 -9.0555 45 1 7.8300 1.6812 -7.5865 46 1 7.5310 -0.7574 -9.5356 47 1 7.5563 1.0220 -10.0205 48 1 9.8773 1.2605 -9.0237 49 1 9.8524 -0.5185 -8.5383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690153131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:55 Heat of formation + Delta-G solvation = 127.438384 kcal Electronic energy + Delta-G solvation = -29203.333651 eV Core-core repulsion = 25205.105995 eV Total energy + Delta-G solvation = -3998.227656 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -44.38385 -39.56418 -37.98993 -37.70217 -34.62170 -33.60876 -33.31460 -33.23805 -31.25452 -29.90533 -28.33092 -28.04262 -27.77917 -24.69863 -23.81363 -22.85190 -22.16100 -21.50971 -20.82062 -20.25765 -19.22991 -17.89907 -17.40563 -17.29571 -16.55509 -16.02821 -15.53600 -15.02286 -14.85179 -14.67026 -14.61203 -14.34988 -13.97843 -13.78721 -13.55226 -13.33870 -13.15136 -12.96473 -12.82678 -12.79216 -12.63321 -12.34552 -12.24329 -11.99322 -11.95008 -11.56054 -11.47964 -11.21543 -10.97634 -10.92432 -10.88010 -10.81411 -10.59212 -10.31991 -10.23328 -9.75497 -9.58508 -9.51548 -9.22587 -9.03410 -8.79389 -7.39445 -5.84833 -3.22072 1.21857 1.71519 2.11808 2.77051 3.32629 3.36376 3.37426 3.43743 3.70005 3.99562 4.05261 4.15429 4.45840 4.51217 4.52858 4.87404 4.92219 4.94020 4.99103 5.09075 5.13266 5.16175 5.17421 5.20187 5.30946 5.38535 5.42158 5.45190 5.57310 5.60451 5.66667 5.69666 5.75045 5.84960 5.85280 5.94761 5.97384 6.17091 6.27733 6.36716 6.55049 6.61188 6.76787 6.99924 7.12879 7.74378 7.90861 8.33289 8.37382 8.39113 9.10938 9.83122 10.02239 11.32649 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002497 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.945482 B =11212.314785 C =12146.177005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 C -0.159 4.159 4 C -0.158 4.158 5 N -0.132 5.132 6 N -0.065 5.065 7 N -0.276 5.276 8 C 0.190 3.810 9 C -0.047 4.047 10 C 0.519 3.481 11 O -0.544 6.544 12 N -0.713 5.713 13 C 0.118 3.882 14 C 0.198 3.802 15 H 0.067 0.933 16 N -0.743 5.743 17 C -0.245 4.245 18 H 0.093 0.907 19 C 0.011 3.989 20 N -0.929 5.929 21 Si 0.877 3.123 22 H -0.285 1.285 23 H -0.292 1.292 24 H -0.275 1.275 25 C -0.178 4.178 26 C -0.165 4.165 27 C -0.170 4.170 28 N -0.296 5.296 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.075 0.925 32 H 0.088 0.912 33 H 0.077 0.923 34 H 0.068 0.932 35 H 0.067 0.933 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.123 0.877 39 H 0.127 0.873 40 H 0.412 0.588 41 H 0.065 0.935 42 H 0.068 0.932 43 H 0.363 0.637 44 H 0.260 0.740 45 H 0.088 0.912 46 H 0.110 0.890 47 H 0.071 0.929 48 H 0.073 0.927 49 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.185 9.982 19.468 25.544 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.098 3.902 3 C -0.217 4.217 4 C -0.216 4.216 5 N -0.046 5.046 6 N -0.057 5.057 7 N -0.146 5.146 8 C -0.093 4.093 9 C -0.090 4.090 10 C 0.303 3.697 11 O -0.422 6.422 12 N -0.365 5.365 13 C -0.007 4.007 14 C 0.088 3.912 15 H 0.085 0.915 16 N -0.386 5.386 17 C -0.374 4.374 18 H 0.111 0.889 19 C -0.186 4.186 20 N -0.576 5.576 21 Si 0.708 3.292 22 H -0.211 1.211 23 H -0.218 1.218 24 H -0.201 1.201 25 C -0.200 4.200 26 C -0.202 4.202 27 C -0.207 4.207 28 N -0.146 5.146 29 H 0.094 0.906 30 H 0.107 0.893 31 H 0.094 0.906 32 H 0.107 0.893 33 H 0.096 0.904 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.096 0.904 37 H 0.107 0.893 38 H 0.141 0.859 39 H 0.145 0.855 40 H 0.248 0.752 41 H 0.083 0.917 42 H 0.086 0.914 43 H 0.197 0.803 44 H 0.070 0.930 45 H 0.106 0.894 46 H 0.128 0.872 47 H 0.089 0.911 48 H 0.091 0.909 49 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -14.072 10.673 19.547 26.344 hybrid contribution -0.408 -0.855 -0.688 1.171 sum -14.480 9.818 18.859 25.724 Atomic orbital electron populations 1.22083 0.90192 1.04543 1.04240 1.21347 0.96368 0.92794 0.79669 1.22227 1.03411 0.92130 1.03945 1.22225 1.03332 1.00997 0.95051 1.50397 1.01188 1.35038 1.17949 1.78883 1.22027 1.09172 0.95642 1.75821 1.00824 1.18920 1.19083 1.24616 0.94832 0.98426 0.91395 1.19892 0.91939 0.99579 0.97625 1.20054 0.80753 0.87735 0.81160 1.90704 1.53470 1.29570 1.68462 1.45912 1.28394 1.22089 1.40105 1.21639 0.97848 0.89784 0.91414 1.19959 0.94061 0.85334 0.91831 0.91548 1.42858 1.06350 1.16853 1.72579 1.18995 0.88564 0.96711 1.33151 0.88926 1.24643 0.96343 0.96909 1.00689 1.69687 1.29154 1.11504 1.47273 0.86678 0.85911 0.77901 0.78739 1.21132 1.21809 1.20150 1.23003 1.04211 0.98923 0.93858 1.22847 1.00218 1.02958 0.94226 1.22903 0.90950 1.02782 1.04061 1.74523 1.03192 1.19299 1.17555 0.90587 0.89347 0.90631 0.89318 0.90369 0.91311 0.91443 0.90391 0.89258 0.85852 0.85480 0.75174 0.91672 0.91421 0.80311 0.92988 0.89381 0.87197 0.91088 0.90869 0.87262 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 7.91 37.16 0.29 -0.61 16 2 C 0.18 1.39 1.30 -131.82 -0.17 1.22 16 3 C -0.16 -1.08 8.66 37.15 0.32 -0.76 16 4 C -0.16 -0.90 8.67 37.16 0.32 -0.58 16 5 N -0.13 -1.63 3.73 0.48 0.00 -1.63 16 6 N -0.06 -0.94 12.24 60.35 0.74 -0.21 16 7 N -0.28 -4.51 12.50 32.45 0.41 -4.10 16 8 C 0.19 2.84 6.86 -156.62 -1.07 1.76 16 9 C -0.05 -0.60 6.33 -29.03 -0.18 -0.78 16 10 C 0.52 8.10 7.82 -10.99 -0.09 8.02 16 11 O -0.54 -10.52 16.03 5.56 0.09 -10.43 16 12 N -0.71 -10.67 5.39 -60.30 -0.32 -11.00 16 13 C 0.12 1.84 5.22 -4.04 -0.02 1.82 16 14 C 0.20 3.40 2.86 -67.93 -0.19 3.21 16 15 H 0.07 1.17 8.08 -51.93 -0.42 0.75 16 16 N -0.74 -15.26 2.88 -53.43 -0.15 -15.41 16 17 C -0.24 -6.07 8.64 -15.06 -0.13 -6.20 16 18 H 0.09 2.50 7.14 -52.48 -0.37 2.12 16 19 C 0.01 0.28 5.50 -17.43 -0.10 0.19 16 20 N -0.93 -27.39 13.97 55.49 0.78 -26.62 16 21 Si 0.88 20.88 27.73 -169.99 -4.71 16.17 16 22 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 24 H -0.28 -6.14 6.52 56.52 0.37 -5.77 16 25 C -0.18 -2.96 5.70 -90.62 -0.52 -3.48 16 26 C -0.17 -2.97 9.74 -26.69 -0.26 -3.23 16 27 C -0.17 -3.00 9.87 -26.69 -0.26 -3.26 16 28 N -0.30 -4.10 11.83 32.47 0.38 -3.72 16 29 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.08 0.52 8.14 -51.93 -0.42 0.09 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 39 H 0.13 1.40 8.14 -51.93 -0.42 0.98 16 40 H 0.41 5.91 8.14 -40.82 -0.33 5.58 16 41 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.36 7.68 5.66 -40.82 -0.23 7.45 16 44 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 45 H 0.09 1.30 8.11 -51.93 -0.42 0.87 16 46 H 0.11 2.29 6.68 -51.93 -0.35 1.95 16 47 H 0.07 1.13 8.14 -51.92 -0.42 0.71 16 48 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 49 H 0.11 2.24 6.22 -51.92 -0.32 1.92 16 LS Contribution 402.58 15.07 6.07 6.07 Total: -1.00 -33.57 402.58 -6.75 -40.32 By element: Atomic # 1 Polarization: 21.19 SS G_CDS: -7.96 Total: 13.23 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: -2.06 Total: -2.67 kcal Atomic # 7 Polarization: -64.51 SS G_CDS: 1.83 Total: -62.68 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.71 Total: 16.17 kcal Total LS contribution 6.07 Total: 6.07 kcal Total: -33.57 -6.75 -40.32 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690153131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.755 kcal (2) G-P(sol) polarization free energy of solvation -33.567 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.188 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.317 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds