Wall clock time and date at job start Tue Mar 31 2020 19:59:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 C 1.53006 * 109.47127 * 120.00347 * 2 1 3 5 5 N 1.46497 * 109.47188 * 239.99790 * 2 1 3 6 6 N 1.28786 * 125.45150 * 0.03127 * 5 2 1 7 7 N 1.28996 * 108.73147 * 179.97438 * 6 5 2 8 8 C 1.33320 * 107.35081 * 359.97438 * 7 6 5 9 9 C 1.50703 * 126.54744 * 180.02562 * 8 7 6 10 10 C 1.50700 * 109.46840 * 89.97721 * 9 8 7 11 11 O 1.21276 * 120.00077 * 0.02562 * 10 9 8 12 12 N 1.34772 * 119.99790 * 180.02562 * 10 9 8 13 13 C 1.46502 * 120.00256 * 179.97438 * 12 10 9 14 14 C 1.52996 * 109.47495 * 179.97438 * 13 12 10 15 15 H 1.09003 * 109.47292 * 295.00670 * 14 13 12 16 16 N 1.46501 * 109.47152 * 55.00415 * 14 13 12 17 17 C 1.36932 * 120.00151 * 205.00352 * 16 14 13 18 18 H 1.08004 * 120.00001 * 359.97438 * 17 16 14 19 19 C 1.38813 * 119.99979 * 179.97438 * 17 16 14 20 20 N 1.31619 * 120.00018 * 179.97438 * 19 17 16 21 21 Si 1.86803 * 120.00159 * 359.97438 * 19 17 16 22 22 H 1.48494 * 109.47198 * 89.99889 * 21 19 17 23 23 H 1.48497 * 109.47245 * 210.00605 * 21 19 17 24 24 H 1.48505 * 109.47017 * 330.00156 * 21 19 17 25 25 C 1.52997 * 109.47318 * 175.00290 * 14 13 12 26 26 C 1.53002 * 117.49693 * 248.74983 * 25 14 13 27 27 C 1.52999 * 117.50276 * 180.08966 * 25 14 13 28 28 N 1.28881 * 125.45322 * 179.71586 * 5 2 1 29 29 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 30 30 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 31 31 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47066 * 60.00169 * 3 2 1 33 33 H 1.08996 * 109.47747 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47103 * 300.00247 * 3 2 1 35 35 H 1.08993 * 109.46955 * 60.00011 * 4 2 1 36 36 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 37 37 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 38 38 H 1.08996 * 109.46784 * 209.97890 * 9 8 7 39 39 H 1.09005 * 109.46889 * 329.97924 * 9 8 7 40 40 H 0.97004 * 120.00075 * 0.02562 * 12 10 9 41 41 H 1.08997 * 109.47410 * 300.00392 * 13 12 10 42 42 H 1.09005 * 109.46892 * 60.00267 * 13 12 10 43 43 H 0.97005 * 120.00083 * 24.99152 * 16 14 13 44 44 H 0.97002 * 119.99917 * 180.02562 * 20 19 17 45 45 H 1.08999 * 115.55332 * 34.41725 * 25 14 13 46 46 H 1.08992 * 117.50032 * 359.97438 * 26 25 14 47 47 H 1.09008 * 117.49740 * 145.02257 * 26 25 14 48 48 H 1.08997 * 117.50456 * 214.98334 * 27 25 14 49 49 H 1.09008 * 117.49494 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 7 2.0183 -0.6906 -1.1961 6 7 1.2782 -1.2172 -2.1091 7 7 2.0399 -1.7374 -3.0109 8 6 3.3017 -1.5220 -2.6381 9 6 4.5420 -1.9492 -3.3799 10 6 4.9546 -0.8609 -4.3372 11 8 4.3057 0.1611 -4.4097 12 7 6.0447 -1.0234 -5.1129 13 6 6.4455 0.0343 -6.0440 14 6 7.7047 -0.3994 -6.7970 15 1 8.5331 -0.4948 -6.0950 16 7 7.4647 -1.6900 -7.4474 17 6 8.5167 -2.5186 -7.7336 18 1 9.5234 -2.2205 -7.4802 19 6 8.2892 -3.7417 -8.3494 20 7 9.3003 -4.5379 -8.6249 21 14 6.5479 -4.2576 -8.7870 22 1 6.2222 -3.7879 -10.1576 23 1 6.4417 -5.7377 -8.7326 24 1 5.5956 -3.6571 -7.8186 25 6 8.0519 0.6487 -7.8562 26 6 7.8866 0.2510 -9.3244 27 6 9.2869 0.3950 -8.7230 28 7 3.2573 -0.8636 -1.5060 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.6768 1.9562 0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8900 35 1 1.6767 -1.7489 1.2492 36 1 3.1300 -0.7217 1.2490 37 1 1.6767 -0.2075 2.1393 38 1 5.3468 -2.1309 -2.6676 39 1 4.3358 -2.8636 -3.9362 40 1 6.5635 -1.8410 -5.0552 41 1 5.6404 0.2159 -6.7560 42 1 6.6520 0.9488 -5.4880 43 1 6.5606 -1.9576 -7.6752 44 1 9.1414 -5.3925 -9.0555 45 1 7.8300 1.6812 -7.5865 46 1 7.5310 -0.7574 -9.5356 47 1 7.5563 1.0220 -10.0205 48 1 9.8773 1.2605 -9.0237 49 1 9.8524 -0.5185 -8.5383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690153131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:54 Heat of formation + Delta-G solvation = 103.857647 kcal Electronic energy + Delta-G solvation = -29204.356189 eV Core-core repulsion = 25205.105995 eV Total energy + Delta-G solvation = -3999.250194 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -45.40127 -40.83773 -39.26130 -38.58574 -35.97583 -35.08699 -34.66770 -34.19475 -33.00049 -31.15039 -29.61071 -28.52326 -28.39483 -25.66723 -25.37142 -24.40600 -23.38397 -22.91516 -21.69514 -21.45608 -20.71987 -19.63016 -18.57826 -18.06069 -17.71660 -17.25364 -16.91486 -16.40396 -16.33194 -15.84676 -15.41002 -15.24912 -15.14884 -15.08162 -14.72098 -14.46718 -14.44257 -14.34898 -14.02729 -13.44333 -13.37097 -13.23512 -13.03065 -12.94139 -12.85936 -12.84156 -12.61772 -12.56920 -12.49169 -12.16541 -12.11115 -12.02274 -11.95122 -11.87972 -11.60494 -11.39513 -11.06899 -11.00556 -10.77968 -10.63006 -10.07558 -9.29783 -7.93924 -5.26643 0.20406 0.92137 1.03211 1.41703 1.44783 1.50360 1.56637 2.21860 2.53178 2.80397 3.09138 3.15164 3.39449 3.51935 3.58529 3.62436 3.66336 3.80664 3.89928 4.19215 4.25858 4.32278 4.38540 4.45467 4.47750 4.51509 4.52415 4.54933 4.60041 4.64702 4.68158 4.71254 4.72419 4.77300 4.88371 4.97771 5.01547 5.11052 5.17436 5.20999 5.21608 5.35262 5.43023 5.53684 5.62032 5.90670 6.28585 6.52753 7.14471 7.18127 7.32082 7.88752 8.07415 9.27055 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017018 B = 0.002497 C = 0.002305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1644.945482 B =11212.314785 C =12146.177005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.161 3.839 3 C -0.155 4.155 4 C -0.152 4.152 5 N -0.119 5.119 6 N -0.079 5.079 7 N -0.312 5.312 8 C 0.176 3.824 9 C -0.044 4.044 10 C 0.521 3.479 11 O -0.584 6.584 12 N -0.709 5.709 13 C 0.127 3.873 14 C 0.198 3.802 15 H 0.067 0.933 16 N -0.740 5.740 17 C -0.203 4.203 18 H 0.067 0.933 19 C -0.054 4.054 20 N -0.981 5.981 21 Si 0.935 3.065 22 H -0.293 1.293 23 H -0.304 1.304 24 H -0.249 1.249 25 C -0.164 4.164 26 C -0.173 4.173 27 C -0.175 4.175 28 N -0.301 5.301 29 H 0.060 0.940 30 H 0.126 0.874 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.063 0.937 34 H 0.050 0.950 35 H 0.061 0.939 36 H 0.067 0.933 37 H 0.125 0.875 38 H 0.155 0.845 39 H 0.144 0.856 40 H 0.416 0.584 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.364 0.636 44 H 0.254 0.746 45 H 0.120 0.880 46 H 0.077 0.923 47 H 0.095 0.905 48 H 0.100 0.900 49 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.621 11.888 21.682 28.726 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.082 3.918 3 C -0.213 4.213 4 C -0.210 4.210 5 N -0.035 5.035 6 N -0.071 5.071 7 N -0.182 5.182 8 C -0.107 4.107 9 C -0.086 4.086 10 C 0.307 3.693 11 O -0.464 6.464 12 N -0.360 5.360 13 C 0.002 3.998 14 C 0.090 3.910 15 H 0.085 0.915 16 N -0.383 5.383 17 C -0.334 4.334 18 H 0.085 0.915 19 C -0.246 4.246 20 N -0.633 5.633 21 Si 0.765 3.235 22 H -0.220 1.220 23 H -0.231 1.231 24 H -0.174 1.174 25 C -0.185 4.185 26 C -0.211 4.211 27 C -0.212 4.212 28 N -0.152 5.152 29 H 0.079 0.921 30 H 0.144 0.856 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.082 0.918 34 H 0.069 0.931 35 H 0.080 0.920 36 H 0.086 0.914 37 H 0.144 0.856 38 H 0.173 0.827 39 H 0.162 0.838 40 H 0.253 0.747 41 H 0.075 0.925 42 H 0.101 0.899 43 H 0.198 0.802 44 H 0.063 0.937 45 H 0.138 0.862 46 H 0.096 0.904 47 H 0.113 0.887 48 H 0.118 0.882 49 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.536 12.617 21.788 29.585 hybrid contribution 0.074 -1.283 -1.267 1.804 sum -15.461 11.335 20.522 28.083 Atomic orbital electron populations 1.22138 0.88723 1.04485 1.05363 1.22028 0.97660 0.93222 0.78908 1.22256 1.02489 0.91571 1.04979 1.22251 1.02653 1.00930 0.95189 1.50986 1.00647 1.33634 1.18189 1.78795 1.22270 1.09843 0.96154 1.75767 1.01682 1.20399 1.20306 1.25009 0.95098 0.98704 0.91864 1.20020 0.92145 0.98754 0.97713 1.20479 0.80056 0.87750 0.81018 1.90688 1.54646 1.31378 1.69704 1.45877 1.28345 1.22059 1.39755 1.21502 0.96388 0.90517 0.91346 1.20101 0.95053 0.83944 0.91941 0.91523 1.42797 1.05192 1.17696 1.72637 1.18874 0.88488 0.96181 1.29830 0.91523 1.25229 0.99412 0.97617 1.02293 1.69844 1.31313 1.12103 1.49992 0.85714 0.82591 0.76714 0.78482 1.22005 1.23101 1.17377 1.23020 1.02737 1.00099 0.92672 1.22801 1.00402 1.02047 0.95813 1.22828 0.91055 1.02320 1.04981 1.74490 1.04011 1.19274 1.17436 0.92067 0.85566 0.91279 0.85411 0.91755 0.93102 0.92013 0.91426 0.85616 0.82689 0.83844 0.74652 0.92480 0.89897 0.80250 0.93739 0.86198 0.90444 0.88654 0.88203 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 7.91 71.98 0.57 -0.90 16 2 C 0.16 2.21 1.30 3.60 0.00 2.21 16 3 C -0.15 -1.81 8.66 71.98 0.62 -1.19 16 4 C -0.15 -1.36 8.67 71.98 0.62 -0.74 16 5 N -0.12 -2.85 3.73 -152.40 -0.57 -3.42 16 6 N -0.08 -2.29 12.24 37.02 0.45 -1.83 16 7 N -0.31 -10.17 12.50 -51.26 -0.64 -10.81 16 8 C 0.18 5.13 6.86 138.55 0.95 6.08 16 9 C -0.04 -1.03 6.33 29.10 0.18 -0.85 16 10 C 0.52 15.45 7.82 87.66 0.69 16.13 16 11 O -0.58 -22.01 16.03 -3.02 -0.05 -22.06 16 12 N -0.71 -19.77 5.39 -463.07 -2.50 -22.27 16 13 C 0.13 3.69 5.22 86.38 0.45 4.14 16 14 C 0.20 6.44 2.86 44.99 0.13 6.56 16 15 H 0.07 2.22 8.08 -2.39 -0.02 2.20 16 16 N -0.74 -29.63 2.88 -322.94 -0.93 -30.56 16 17 C -0.20 -10.13 8.64 84.03 0.73 -9.40 16 18 H 0.07 3.68 7.14 -2.91 -0.02 3.66 16 19 C -0.05 -2.95 5.50 84.86 0.47 -2.48 16 20 N -0.98 -59.70 13.97 21.65 0.30 -59.40 16 21 Si 0.94 43.56 27.73 68.60 1.90 45.46 16 22 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 23 H -0.30 -14.69 7.11 99.48 0.71 -13.98 16 24 H -0.25 -10.36 6.52 99.48 0.65 -9.71 16 25 C -0.16 -5.04 5.70 -10.79 -0.06 -5.10 16 26 C -0.17 -5.94 9.74 30.62 0.30 -5.64 16 27 C -0.17 -5.93 9.87 30.62 0.30 -5.63 16 28 N -0.30 -8.13 11.83 -51.20 -0.61 -8.73 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.13 0.26 8.14 -2.39 -0.02 0.24 16 31 H 0.07 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.13 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.06 0.94 8.14 -2.39 -0.02 0.93 16 34 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 36 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.13 0.21 8.14 -2.39 -0.02 0.19 16 38 H 0.16 2.56 8.14 -2.39 -0.02 2.55 16 39 H 0.14 2.88 8.14 -2.38 -0.02 2.86 16 40 H 0.42 11.04 8.14 -92.71 -0.75 10.28 16 41 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 42 H 0.08 2.22 8.14 -2.38 -0.02 2.20 16 43 H 0.36 14.78 5.66 -92.70 -0.52 14.26 16 44 H 0.25 15.01 8.31 -92.71 -0.77 14.24 16 45 H 0.12 3.02 8.11 -2.39 -0.02 3.00 16 46 H 0.08 3.19 6.68 -2.39 -0.02 3.18 16 47 H 0.10 2.80 8.14 -2.38 -0.02 2.78 16 48 H 0.10 2.85 8.14 -2.39 -0.02 2.83 16 49 H 0.07 3.05 6.22 -2.38 -0.01 3.04 16 Total: -1.00 -75.95 402.58 2.95 -73.00 By element: Atomic # 1 Polarization: 37.79 SS G_CDS: -0.37 Total: 37.42 kcal Atomic # 6 Polarization: -2.75 SS G_CDS: 5.95 Total: 3.20 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -4.48 Total: -137.02 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -0.05 Total: -22.06 kcal Atomic # 14 Polarization: 43.56 SS G_CDS: 1.90 Total: 45.46 kcal Total: -75.95 2.95 -73.00 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690153131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 176.858 kcal (2) G-P(sol) polarization free energy of solvation -75.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.954 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds