Wall clock time and date at job start Tue Mar 31 2020 19:59:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47368 * 2 1 4 4 C 1.52998 * 109.47128 * 239.99761 * 2 1 3 5 5 N 1.46497 * 109.46792 * 119.99898 * 2 1 3 6 6 N 1.28775 * 125.45142 * 359.97438 * 5 2 1 7 7 N 1.29002 * 108.72851 * 180.02562 * 6 5 2 8 8 C 1.33311 * 107.35219 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.54990 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47064 * 90.02594 * 9 8 7 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99944 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10 15 15 H 1.08991 * 109.47625 * 64.99762 * 14 13 12 16 16 N 1.46504 * 109.47054 * 304.99499 * 14 13 12 17 17 C 1.36929 * 119.99940 * 155.00291 * 16 14 13 18 18 H 1.08007 * 120.00260 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00410 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99828 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00548 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47186 * 59.99665 * 21 19 17 23 23 H 1.48502 * 109.47374 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47097 * 300.00036 * 21 19 17 25 25 C 1.53006 * 109.46846 * 185.00008 * 14 13 12 26 26 C 1.52995 * 117.49555 * 248.74420 * 25 14 13 27 27 C 1.52995 * 117.49792 * 180.08660 * 25 14 13 28 28 N 1.28885 * 125.44863 * 180.30693 * 5 2 1 29 29 H 1.08996 * 109.47067 * 300.00356 * 1 2 3 30 30 H 1.09002 * 109.46527 * 59.99730 * 1 2 3 31 31 H 1.08996 * 109.47363 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47258 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47103 * 300.00192 * 3 2 1 34 34 H 1.09002 * 109.46657 * 59.99721 * 3 2 1 35 35 H 1.08996 * 109.47244 * 300.00373 * 4 2 1 36 36 H 1.09003 * 109.47111 * 60.00255 * 4 2 1 37 37 H 1.09000 * 109.46884 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47060 * 330.02630 * 9 8 7 39 39 H 1.09001 * 109.47380 * 210.02542 * 9 8 7 40 40 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 42 42 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 43 43 H 0.96996 * 120.00090 * 335.00419 * 16 14 13 44 44 H 0.96994 * 120.00251 * 180.02562 * 20 19 17 45 45 H 1.08997 * 115.54853 * 34.41146 * 25 14 13 46 46 H 1.08998 * 117.49984 * 359.97438 * 26 25 14 47 47 H 1.09006 * 117.49830 * 145.02021 * 26 25 14 48 48 H 1.09000 * 117.49832 * 214.98051 * 27 25 14 49 49 H 1.09001 * 117.49910 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2782 -1.2171 2.1091 7 7 2.0399 -1.7373 3.0109 8 6 3.3016 -1.5228 2.6377 9 6 4.5419 -1.9502 3.3793 10 6 4.9553 -3.3237 2.9170 11 8 4.3069 -3.8986 2.0685 12 7 6.0456 -3.9132 3.4465 13 6 6.4478 -5.2481 2.9967 14 6 7.7062 -5.6827 3.7506 15 1 7.4752 -5.7928 4.8101 16 7 8.7511 -4.6698 3.5813 17 6 9.7423 -4.5456 4.5178 18 1 9.7537 -5.1941 5.3814 19 6 10.7321 -3.5857 4.3577 20 7 10.7180 -2.7950 3.3055 21 14 12.0848 -3.4167 5.6348 22 1 12.8362 -4.6939 5.7320 23 1 13.0110 -2.3273 5.2338 24 1 11.4830 -3.0949 6.9538 25 6 8.1977 -7.0205 3.1940 26 6 8.0814 -8.2480 4.0998 27 6 9.4533 -7.6284 3.8222 28 7 3.2573 -0.8631 1.5063 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 4.3354 -1.9739 4.4493 39 1 5.3465 -1.2424 3.1801 40 1 6.5643 -3.4532 4.1248 41 1 6.6548 -5.2240 1.9268 42 1 5.6431 -5.9561 3.1951 43 1 8.7407 -4.0872 2.8059 44 1 11.4098 -2.1245 3.1934 45 1 8.0480 -7.1681 2.1245 46 1 7.6551 -8.1024 5.0923 47 1 7.8556 -9.2034 3.6261 48 1 10.1295 -8.1764 3.1661 49 1 9.9294 -7.0752 4.6318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690153132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:59 Heat of formation + Delta-G solvation = 119.918108 kcal Electronic energy + Delta-G solvation = -29020.804484 eV Core-core repulsion = 25022.250724 eV Total energy + Delta-G solvation = -3998.553760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.29976 -39.41588 -37.88278 -37.50753 -34.66581 -33.51279 -33.38995 -33.15919 -31.06342 -29.65169 -28.02276 -27.94949 -27.54179 -24.61270 -23.86905 -22.88303 -21.93248 -21.67607 -20.73470 -20.21148 -19.47592 -17.62542 -17.26548 -17.17478 -16.42170 -15.90816 -15.36647 -14.96654 -14.72925 -14.57785 -14.41371 -14.35474 -13.83187 -13.76013 -13.50631 -13.29225 -13.15234 -12.94708 -12.84224 -12.74827 -12.45651 -12.26215 -12.01674 -11.86977 -11.78934 -11.42117 -11.37555 -11.15451 -10.88456 -10.86188 -10.85147 -10.78195 -10.72139 -10.22848 -10.16700 -9.94208 -9.69583 -9.45208 -9.29595 -8.99288 -8.64335 -7.06805 -5.83313 -3.12943 1.30506 1.79927 2.20681 2.90790 3.38619 3.44110 3.45186 3.49300 3.79875 4.08936 4.13540 4.23683 4.40749 4.55542 4.58329 4.96497 5.01063 5.04880 5.08046 5.17118 5.22258 5.22756 5.24876 5.28094 5.45937 5.47957 5.51678 5.52688 5.59910 5.67296 5.70711 5.75931 5.78450 5.90163 5.93644 6.01171 6.07191 6.17468 6.25470 6.40378 6.54140 6.59766 6.76749 6.89188 6.97381 7.63043 7.89445 8.33547 8.45525 8.53302 9.45794 9.99758 10.36118 11.38361 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.002436 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.044075 B =11489.605777 C =12598.533755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.179 3.821 3 C -0.158 4.158 4 C -0.159 4.159 5 N -0.132 5.132 6 N -0.067 5.067 7 N -0.278 5.278 8 C 0.192 3.808 9 C -0.047 4.047 10 C 0.520 3.480 11 O -0.547 6.547 12 N -0.709 5.709 13 C 0.121 3.879 14 C 0.193 3.807 15 H 0.056 0.944 16 N -0.716 5.716 17 C -0.238 4.238 18 H 0.070 0.930 19 C -0.009 4.009 20 N -0.929 5.929 21 Si 0.903 3.097 22 H -0.286 1.286 23 H -0.292 1.292 24 H -0.286 1.286 25 C -0.159 4.159 26 C -0.196 4.196 27 C -0.156 4.156 28 N -0.293 5.293 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.075 0.925 32 H 0.078 0.922 33 H 0.088 0.912 34 H 0.066 0.934 35 H 0.068 0.932 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.125 0.875 39 H 0.125 0.875 40 H 0.412 0.588 41 H 0.063 0.937 42 H 0.066 0.934 43 H 0.386 0.614 44 H 0.256 0.744 45 H 0.090 0.910 46 H 0.086 0.914 47 H 0.080 0.920 48 H 0.079 0.921 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.658 5.553 -5.750 19.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.098 3.902 3 C -0.217 4.217 4 C -0.218 4.218 5 N -0.046 5.046 6 N -0.059 5.059 7 N -0.149 5.149 8 C -0.091 4.091 9 C -0.090 4.090 10 C 0.304 3.696 11 O -0.425 6.425 12 N -0.360 5.360 13 C -0.004 4.004 14 C 0.082 3.918 15 H 0.074 0.926 16 N -0.357 5.357 17 C -0.369 4.369 18 H 0.088 0.912 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.734 3.266 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.213 1.213 25 C -0.181 4.181 26 C -0.234 4.234 27 C -0.193 4.193 28 N -0.143 5.143 29 H 0.093 0.907 30 H 0.106 0.894 31 H 0.094 0.906 32 H 0.097 0.903 33 H 0.107 0.893 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.107 0.893 37 H 0.097 0.903 38 H 0.143 0.857 39 H 0.143 0.857 40 H 0.249 0.751 41 H 0.082 0.918 42 H 0.084 0.916 43 H 0.220 0.780 44 H 0.066 0.934 45 H 0.108 0.892 46 H 0.105 0.895 47 H 0.099 0.901 48 H 0.097 0.903 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -18.651 5.264 -6.361 20.397 hybrid contribution 1.778 0.313 0.704 1.938 sum -16.873 5.577 -5.657 18.650 Atomic orbital electron populations 1.22076 0.90248 1.04584 1.04076 1.21342 0.96289 0.92675 0.79860 1.22227 1.03474 0.92117 1.03832 1.22233 1.03555 1.01118 0.94860 1.50386 1.01214 1.34981 1.17979 1.78850 1.22075 1.09389 0.95612 1.75783 1.00828 1.18118 1.20178 1.24634 0.94783 0.98112 0.91620 1.19886 0.91967 0.96413 1.00700 1.20027 0.80837 0.86772 0.81992 1.90696 1.53965 1.65491 1.32386 1.45860 1.27824 1.19214 1.43147 1.21594 0.96740 0.82819 0.99234 1.20061 0.87277 0.87626 0.96794 0.92593 1.42447 1.27717 1.38000 1.27579 1.19107 1.02765 1.13959 1.01025 0.91189 1.24715 0.99143 0.98815 0.97864 1.69647 1.35879 1.23410 1.28746 0.86343 0.82095 0.77222 0.80938 1.21314 1.21796 1.21271 1.23027 1.03018 0.94387 0.97662 1.22964 1.02622 0.96965 1.00862 1.22781 0.90180 1.02454 1.03913 1.74578 1.03037 1.20449 1.16273 0.90680 0.89392 0.90615 0.90285 0.89289 0.91485 0.91325 0.89341 0.90268 0.85717 0.85659 0.75113 0.91834 0.91622 0.78029 0.93426 0.89190 0.89502 0.90111 0.90252 0.87687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 7.91 37.16 0.29 -0.68 16 2 C 0.18 1.54 1.30 -131.82 -0.17 1.36 16 3 C -0.16 -1.06 8.66 37.16 0.32 -0.73 16 4 C -0.16 -1.25 8.67 37.16 0.32 -0.93 16 5 N -0.13 -1.73 3.73 0.48 0.00 -1.73 16 6 N -0.07 -0.99 12.24 60.35 0.74 -0.25 16 7 N -0.28 -4.56 12.50 32.44 0.41 -4.16 16 8 C 0.19 2.98 6.86 -156.63 -1.07 1.91 16 9 C -0.05 -0.62 6.33 -29.03 -0.18 -0.81 16 10 C 0.52 8.59 7.82 -10.98 -0.09 8.51 16 11 O -0.55 -11.07 16.03 5.56 0.09 -10.98 16 12 N -0.71 -11.36 5.39 -60.29 -0.32 -11.68 16 13 C 0.12 2.03 5.22 -4.04 -0.02 2.01 16 14 C 0.19 3.50 2.70 -67.92 -0.18 3.32 16 15 H 0.06 1.02 7.84 -51.93 -0.41 0.62 16 16 N -0.72 -15.93 4.54 -53.42 -0.24 -16.17 16 17 C -0.24 -5.90 8.63 -15.06 -0.13 -6.03 16 18 H 0.07 1.70 6.91 -52.48 -0.36 1.34 16 19 C -0.01 -0.24 5.50 -17.43 -0.10 -0.33 16 20 N -0.93 -26.26 13.06 55.49 0.72 -25.54 16 21 Si 0.90 21.18 29.55 -169.99 -5.02 16.15 16 22 H -0.29 -6.70 7.11 56.52 0.40 -6.29 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 H -0.29 -6.60 7.11 56.52 0.40 -6.19 16 25 C -0.16 -2.75 5.36 -90.62 -0.49 -3.23 16 26 C -0.20 -2.97 10.18 -26.70 -0.27 -3.24 16 27 C -0.16 -2.75 9.78 -26.70 -0.26 -3.01 16 28 N -0.29 -4.40 11.83 32.46 0.38 -4.02 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 33 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.09 0.41 8.14 -51.93 -0.42 -0.01 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.12 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.13 1.46 8.14 -51.93 -0.42 1.04 16 40 H 0.41 6.44 8.14 -40.82 -0.33 6.11 16 41 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 42 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.39 9.42 7.80 -40.82 -0.32 9.10 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 45 H 0.09 1.53 8.11 -51.93 -0.42 1.11 16 46 H 0.09 1.26 8.05 -51.93 -0.42 0.84 16 47 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.08 1.33 8.14 -51.93 -0.42 0.90 16 49 H 0.10 2.06 6.23 -51.93 -0.32 1.74 16 LS Contribution 408.61 15.07 6.16 6.16 Total: -1.00 -32.74 408.61 -7.18 -39.92 By element: Atomic # 1 Polarization: 22.24 SS G_CDS: -8.06 Total: 14.18 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -2.03 Total: -1.89 kcal Atomic # 7 Polarization: -65.23 SS G_CDS: 1.69 Total: -63.54 kcal Atomic # 8 Polarization: -11.07 SS G_CDS: 0.09 Total: -10.98 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.74 -7.18 -39.92 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690153132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.835 kcal (2) G-P(sol) polarization free energy of solvation -32.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.918 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds