Wall clock time and date at job start Tue Mar 31 2020 19:59:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53003 * 109.47368 * 2 1 4 4 C 1.52998 * 109.47128 * 239.99761 * 2 1 3 5 5 N 1.46497 * 109.46792 * 119.99898 * 2 1 3 6 6 N 1.28775 * 125.45142 * 359.97438 * 5 2 1 7 7 N 1.29002 * 108.72851 * 180.02562 * 6 5 2 8 8 C 1.33311 * 107.35219 * 359.97438 * 7 6 5 9 9 C 1.50701 * 126.54990 * 179.97438 * 8 7 6 10 10 C 1.50703 * 109.47064 * 90.02594 * 9 8 7 11 11 O 1.21278 * 119.99985 * 0.02562 * 10 9 8 12 12 N 1.34779 * 119.99944 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99872 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.46840 * 180.02562 * 13 12 10 15 15 H 1.08991 * 109.47625 * 64.99762 * 14 13 12 16 16 N 1.46504 * 109.47054 * 304.99499 * 14 13 12 17 17 C 1.36929 * 119.99940 * 155.00291 * 16 14 13 18 18 H 1.08007 * 120.00260 * 359.97438 * 17 16 14 19 19 C 1.38808 * 120.00410 * 180.02562 * 17 16 14 20 20 N 1.31625 * 119.99828 * 359.97438 * 19 17 16 21 21 Si 1.86798 * 120.00548 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47186 * 59.99665 * 21 19 17 23 23 H 1.48502 * 109.47374 * 179.97438 * 21 19 17 24 24 H 1.48505 * 109.47097 * 300.00036 * 21 19 17 25 25 C 1.53006 * 109.46846 * 185.00008 * 14 13 12 26 26 C 1.52995 * 117.49555 * 248.74420 * 25 14 13 27 27 C 1.52995 * 117.49792 * 180.08660 * 25 14 13 28 28 N 1.28885 * 125.44863 * 180.30693 * 5 2 1 29 29 H 1.08996 * 109.47067 * 300.00356 * 1 2 3 30 30 H 1.09002 * 109.46527 * 59.99730 * 1 2 3 31 31 H 1.08996 * 109.47363 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47258 * 179.97438 * 3 2 1 33 33 H 1.08995 * 109.47103 * 300.00192 * 3 2 1 34 34 H 1.09002 * 109.46657 * 59.99721 * 3 2 1 35 35 H 1.08996 * 109.47244 * 300.00373 * 4 2 1 36 36 H 1.09003 * 109.47111 * 60.00255 * 4 2 1 37 37 H 1.09000 * 109.46884 * 179.97438 * 4 2 1 38 38 H 1.09002 * 109.47060 * 330.02630 * 9 8 7 39 39 H 1.09001 * 109.47380 * 210.02542 * 9 8 7 40 40 H 0.97000 * 119.99708 * 359.97438 * 12 10 9 41 41 H 1.09002 * 109.47391 * 59.99686 * 13 12 10 42 42 H 1.09001 * 109.46813 * 299.99742 * 13 12 10 43 43 H 0.96996 * 120.00090 * 335.00419 * 16 14 13 44 44 H 0.96994 * 120.00251 * 180.02562 * 20 19 17 45 45 H 1.08997 * 115.54853 * 34.41146 * 25 14 13 46 46 H 1.08998 * 117.49984 * 359.97438 * 26 25 14 47 47 H 1.09006 * 117.49830 * 145.02021 * 26 25 14 48 48 H 1.09000 * 117.49832 * 214.98051 * 27 25 14 49 49 H 1.09001 * 117.49910 * 359.97438 * 27 25 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 7 2.0183 -0.6906 1.1962 6 7 1.2782 -1.2171 2.1091 7 7 2.0399 -1.7373 3.0109 8 6 3.3016 -1.5228 2.6377 9 6 4.5419 -1.9502 3.3793 10 6 4.9553 -3.3237 2.9170 11 8 4.3069 -3.8986 2.0685 12 7 6.0456 -3.9132 3.4465 13 6 6.4478 -5.2481 2.9967 14 6 7.7062 -5.6827 3.7506 15 1 7.4752 -5.7928 4.8101 16 7 8.7511 -4.6698 3.5813 17 6 9.7423 -4.5456 4.5178 18 1 9.7537 -5.1941 5.3814 19 6 10.7321 -3.5857 4.3577 20 7 10.7180 -2.7950 3.3055 21 14 12.0848 -3.4167 5.6348 22 1 12.8362 -4.6939 5.7320 23 1 13.0110 -2.3273 5.2338 24 1 11.4830 -3.0949 6.9538 25 6 8.1977 -7.0205 3.1940 26 6 8.0814 -8.2480 4.0998 27 6 9.4533 -7.6284 3.8222 28 7 3.2573 -0.8631 1.5063 29 1 -0.3633 0.5139 0.8899 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 3.1300 1.4425 0.0005 33 1 1.6768 1.9563 -0.8899 34 1 1.6767 1.9563 0.8900 35 1 1.6767 -1.7489 -1.2492 36 1 1.6767 -0.2075 -2.1392 37 1 3.1300 -0.7209 -1.2494 38 1 4.3354 -1.9739 4.4493 39 1 5.3465 -1.2424 3.1801 40 1 6.5643 -3.4532 4.1248 41 1 6.6548 -5.2240 1.9268 42 1 5.6431 -5.9561 3.1951 43 1 8.7407 -4.0872 2.8059 44 1 11.4098 -2.1245 3.1934 45 1 8.0480 -7.1681 2.1245 46 1 7.6551 -8.1024 5.0923 47 1 7.8556 -9.2034 3.6261 48 1 10.1295 -8.1764 3.1661 49 1 9.9294 -7.0752 4.6318 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690153132.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:59:58 Heat of formation + Delta-G solvation = 97.388958 kcal Electronic energy + Delta-G solvation = -29021.781421 eV Core-core repulsion = 25022.250724 eV Total energy + Delta-G solvation = -3999.530697 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -45.38599 -40.78026 -39.03126 -38.56718 -36.10012 -35.13095 -34.64690 -34.17899 -32.73772 -30.92614 -29.28599 -28.52798 -28.36833 -25.70303 -25.52925 -24.31123 -23.19054 -22.99210 -21.69917 -21.51607 -20.88567 -19.27382 -18.54200 -18.05197 -17.66871 -17.20966 -16.88126 -16.40974 -16.00833 -15.79005 -15.35453 -15.31263 -15.13442 -15.06751 -14.88975 -14.59865 -14.32264 -14.13049 -13.75243 -13.44294 -13.22382 -13.17874 -12.93386 -12.92654 -12.85779 -12.79366 -12.63903 -12.56082 -12.40683 -12.23368 -12.16276 -12.00194 -11.94046 -11.86242 -11.70021 -11.37590 -11.02068 -10.96345 -10.79357 -10.70413 -10.03415 -8.96231 -7.84847 -5.12216 0.22083 0.93163 1.05147 1.53027 1.54140 1.59117 1.59886 2.25683 2.61113 2.83257 3.09761 3.15560 3.51492 3.52143 3.59676 3.67319 3.81230 3.82750 4.02414 4.18123 4.23079 4.36391 4.40250 4.41801 4.46253 4.52058 4.53605 4.57726 4.60024 4.67844 4.69630 4.71822 4.72786 4.79176 4.89470 4.91679 5.01821 5.10835 5.17533 5.18295 5.22455 5.36162 5.41862 5.48525 5.53249 5.65329 6.34585 6.56919 7.21463 7.33540 7.43374 8.13891 8.39917 9.37604 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014318 B = 0.002436 C = 0.002222 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1955.044075 B =11489.605777 C =12598.533755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.161 3.839 3 C -0.153 4.153 4 C -0.156 4.156 5 N -0.119 5.119 6 N -0.076 5.076 7 N -0.305 5.305 8 C 0.178 3.822 9 C -0.041 4.041 10 C 0.521 3.479 11 O -0.587 6.587 12 N -0.703 5.703 13 C 0.130 3.870 14 C 0.198 3.802 15 H 0.061 0.939 16 N -0.722 5.722 17 C -0.217 4.217 18 H 0.077 0.923 19 C -0.069 4.069 20 N -0.966 5.966 21 Si 0.958 3.042 22 H -0.285 1.285 23 H -0.304 1.304 24 H -0.277 1.277 25 C -0.174 4.174 26 C -0.163 4.163 27 C -0.174 4.174 28 N -0.308 5.308 29 H 0.070 0.930 30 H 0.126 0.874 31 H 0.062 0.938 32 H 0.063 0.937 33 H 0.126 0.874 34 H 0.063 0.937 35 H 0.051 0.949 36 H 0.128 0.872 37 H 0.059 0.941 38 H 0.154 0.846 39 H 0.143 0.857 40 H 0.416 0.584 41 H 0.048 0.952 42 H 0.077 0.923 43 H 0.373 0.627 44 H 0.247 0.753 45 H 0.091 0.909 46 H 0.097 0.903 47 H 0.105 0.895 48 H 0.084 0.916 49 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.842 5.498 -5.633 20.420 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.082 3.918 3 C -0.211 4.211 4 C -0.214 4.214 5 N -0.035 5.035 6 N -0.068 5.068 7 N -0.176 5.176 8 C -0.105 4.105 9 C -0.084 4.084 10 C 0.306 3.694 11 O -0.468 6.468 12 N -0.355 5.355 13 C 0.005 3.995 14 C 0.089 3.911 15 H 0.079 0.921 16 N -0.362 5.362 17 C -0.349 4.349 18 H 0.095 0.905 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.789 3.211 22 H -0.212 1.212 23 H -0.231 1.231 24 H -0.204 1.204 25 C -0.195 4.195 26 C -0.201 4.201 27 C -0.211 4.211 28 N -0.158 5.158 29 H 0.089 0.911 30 H 0.144 0.856 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.144 0.856 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.146 0.854 37 H 0.078 0.922 38 H 0.171 0.829 39 H 0.161 0.839 40 H 0.253 0.747 41 H 0.067 0.933 42 H 0.095 0.905 43 H 0.205 0.795 44 H 0.056 0.944 45 H 0.109 0.891 46 H 0.115 0.885 47 H 0.123 0.877 48 H 0.103 0.897 49 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -19.861 5.170 -6.202 21.440 hybrid contribution 2.051 0.275 0.585 2.150 sum -17.810 5.444 -5.617 19.453 Atomic orbital electron populations 1.22129 0.88390 1.04260 1.05749 1.22016 0.97825 0.93454 0.78510 1.22250 1.02486 0.90861 1.05488 1.22260 1.02285 1.00710 0.96139 1.50953 1.00561 1.33719 1.18302 1.78758 1.22216 1.09826 0.96028 1.75730 1.01332 1.19234 1.21271 1.24984 0.95166 0.98385 0.92003 1.19980 0.91805 0.94529 1.02048 1.20500 0.80161 0.87577 0.81114 1.90676 1.55187 1.66747 1.34188 1.45820 1.27701 1.18973 1.42976 1.21454 0.96390 0.83533 0.98140 1.20141 0.86533 0.87174 0.97227 0.92098 1.42544 1.28152 1.38852 1.26603 1.19396 1.02236 1.12357 1.00890 0.90530 1.25330 1.01537 0.99604 0.99636 1.69791 1.36597 1.24566 1.30717 0.85444 0.79775 0.76525 0.79375 1.21195 1.23092 1.20363 1.22935 1.03460 0.94893 0.98248 1.23036 0.99604 0.96684 1.00729 1.22736 0.91186 1.03467 1.03701 1.74547 1.04139 1.20854 1.16299 0.91090 0.85589 0.91920 0.91815 0.85598 0.91819 0.92976 0.85366 0.92207 0.82858 0.83933 0.74698 0.93312 0.90496 0.79453 0.94410 0.89069 0.88454 0.87713 0.89721 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 7.91 71.98 0.57 -1.06 16 2 C 0.16 2.57 1.30 3.61 0.00 2.57 16 3 C -0.15 -1.76 8.66 71.98 0.62 -1.14 16 4 C -0.16 -2.27 8.67 71.98 0.62 -1.65 16 5 N -0.12 -3.12 3.73 -152.39 -0.57 -3.69 16 6 N -0.08 -2.28 12.24 37.02 0.45 -1.83 16 7 N -0.31 -10.11 12.50 -51.26 -0.64 -10.75 16 8 C 0.18 5.55 6.86 138.55 0.95 6.50 16 9 C -0.04 -1.08 6.33 29.10 0.18 -0.90 16 10 C 0.52 17.12 7.82 87.66 0.69 17.81 16 11 O -0.59 -24.01 16.03 -3.02 -0.05 -24.06 16 12 N -0.70 -22.20 5.39 -463.05 -2.50 -24.69 16 13 C 0.13 4.29 5.22 86.38 0.45 4.74 16 14 C 0.20 6.98 2.70 44.99 0.12 7.11 16 15 H 0.06 2.12 7.84 -2.39 -0.02 2.10 16 16 N -0.72 -31.95 4.54 -322.94 -1.47 -33.41 16 17 C -0.22 -10.67 8.63 84.03 0.73 -9.95 16 18 H 0.08 3.64 6.91 -2.91 -0.02 3.62 16 19 C -0.07 -3.64 5.50 84.86 0.47 -3.18 16 20 N -0.97 -55.49 13.06 21.65 0.28 -55.21 16 21 Si 0.96 43.71 29.55 68.60 2.03 45.74 16 22 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 23 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 24 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 25 C -0.17 -5.75 5.36 -10.79 -0.06 -5.81 16 26 C -0.16 -4.45 10.18 30.61 0.31 -4.13 16 27 C -0.17 -5.86 9.78 30.61 0.30 -5.56 16 28 N -0.31 -9.30 11.83 -51.20 -0.61 -9.91 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.13 0.42 8.14 -2.39 -0.02 0.40 16 31 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.13 0.51 8.14 -2.39 -0.02 0.49 16 34 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 35 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 36 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.15 3.05 8.14 -2.39 -0.02 3.03 16 39 H 0.14 3.21 8.14 -2.39 -0.02 3.19 16 40 H 0.42 12.67 8.14 -92.71 -0.75 11.92 16 41 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 42 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 43 H 0.37 18.44 7.80 -92.71 -0.72 17.71 16 44 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 45 H 0.09 3.00 8.11 -2.39 -0.02 2.98 16 46 H 0.10 2.49 8.05 -2.39 -0.02 2.47 16 47 H 0.10 2.41 8.14 -2.38 -0.02 2.39 16 48 H 0.08 2.73 8.14 -2.39 -0.02 2.71 16 49 H 0.08 3.17 6.23 -2.39 -0.01 3.15 16 Total: -1.00 -72.23 408.61 2.39 -69.84 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -0.51 Total: 42.62 kcal Atomic # 6 Polarization: -0.61 SS G_CDS: 5.96 Total: 5.35 kcal Atomic # 7 Polarization: -134.46 SS G_CDS: -5.04 Total: -139.50 kcal Atomic # 8 Polarization: -24.01 SS G_CDS: -0.05 Total: -24.06 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -72.23 2.39 -69.84 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690153132.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.230 kcal (2) G-P(sol) polarization free energy of solvation -72.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 95.001 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.841 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds