Wall clock time and date at job start Tue Mar 31 2020 19:50:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 C 1.50694 * 109.47313 * 119.99857 * 2 1 3 5 5 N 1.31071 * 126.65922 * 300.17302 * 4 2 1 6 6 N 1.28842 * 107.98957 * 180.24136 * 5 4 2 7 7 N 1.28738 * 109.39895 * 359.75351 * 6 5 4 8 8 N 1.29025 * 108.80825 * 359.97438 * 7 6 5 9 9 C 1.46493 * 126.43759 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47152 * 90.02536 * 9 8 7 11 11 O 1.21282 * 119.99725 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00094 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99929 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47070 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.52404 * 55.07112 * 14 13 12 16 16 C 1.53075 * 109.61936 * 175.10456 * 14 13 12 17 17 C 1.53042 * 109.65345 * 181.16636 * 16 14 13 18 18 C 1.53184 * 109.31519 * 298.69965 * 17 16 14 19 19 N 1.46924 * 108.77817 * 54.63388 * 18 17 16 20 20 C 1.36942 * 120.63278 * 126.41448 * 19 18 17 21 21 H 1.08007 * 119.99636 * 331.81204 * 20 19 18 22 22 C 1.38806 * 120.00203 * 151.81256 * 20 19 18 23 23 N 1.31624 * 120.00191 * 343.08250 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 163.07925 * 22 20 19 25 25 H 1.48503 * 109.47195 * 89.99708 * 24 22 20 26 26 H 1.48498 * 109.47355 * 210.00264 * 24 22 20 27 27 H 1.48504 * 109.46850 * 330.00278 * 24 22 20 28 28 C 1.46922 * 118.73925 * 306.39595 * 19 18 17 29 29 H 1.08999 * 109.47595 * 300.00273 * 1 2 3 30 30 H 1.09000 * 109.47450 * 60.00168 * 1 2 3 31 31 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47309 * 240.00166 * 2 1 3 33 33 H 1.09006 * 109.46869 * 299.99737 * 3 2 1 34 34 H 1.08996 * 109.46922 * 59.99929 * 3 2 1 35 35 H 1.08993 * 109.47285 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47645 * 330.02526 * 9 8 7 37 37 H 1.09004 * 109.47060 * 210.02284 * 9 8 7 38 38 H 0.96995 * 120.00054 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.47266 * 59.99535 * 13 12 10 40 40 H 1.09004 * 109.46686 * 299.99755 * 13 12 10 41 41 H 1.08990 * 109.34912 * 61.14555 * 16 14 13 42 42 H 1.08998 * 109.43801 * 301.24577 * 16 14 13 43 43 H 1.09003 * 109.49717 * 178.74428 * 17 16 14 44 44 H 1.09001 * 109.49675 * 58.65327 * 17 16 14 45 45 H 1.09007 * 109.58736 * 294.84868 * 18 17 16 46 46 H 1.08996 * 109.70613 * 174.49205 * 18 17 16 47 47 H 0.96995 * 120.00379 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.58836 * 173.39251 * 28 19 18 49 49 H 1.08998 * 109.58900 * 293.67770 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 1.7949 -0.3801 2.4764 6 7 2.4015 -1.2267 3.2350 7 7 3.0154 -2.0915 2.5051 8 7 2.8088 -1.8093 1.2632 9 6 3.3279 -2.5428 0.1062 10 6 2.3493 -3.6196 -0.2861 11 8 1.3199 -3.7607 0.3394 12 7 2.6181 -4.4259 -1.3322 13 6 1.6665 -5.4723 -1.7140 14 6 2.2087 -6.2385 -2.9223 15 1 3.2040 -6.6202 -2.6949 16 6 1.2777 -7.4089 -3.2487 17 6 1.8346 -8.1932 -4.4391 18 6 1.9039 -7.2748 -5.6631 19 7 2.6803 -6.0776 -5.3128 20 6 3.7520 -5.6936 -6.0739 21 1 4.3172 -6.4326 -6.6224 22 6 4.1119 -4.3547 -6.1404 23 7 3.2601 -3.4247 -5.7635 24 14 5.8052 -3.8725 -6.7647 25 1 5.7527 -3.6749 -8.2356 26 1 6.2330 -2.6099 -6.1105 27 1 6.7760 -4.9496 -6.4443 28 6 2.2847 -5.3000 -4.1307 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8901 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 4.2844 -2.9975 0.3635 37 1 3.4652 -1.8551 -0.7282 38 1 3.4412 -4.3128 -1.8327 39 1 0.7100 -5.0174 -1.9711 40 1 1.5291 -6.1603 -0.8797 41 1 0.2885 -7.0250 -3.4976 42 1 1.2046 -8.0667 -2.3826 43 1 1.1816 -9.0388 -4.6552 44 1 2.8340 -8.5565 -4.1998 45 1 0.8960 -6.9830 -5.9586 46 1 2.3895 -7.7970 -6.4874 47 1 3.5114 -2.4890 -5.8103 48 1 3.0231 -4.5206 -3.9421 49 1 1.3091 -4.8452 -4.3020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690390280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:55 Heat of formation + Delta-G solvation = 85.527937 kcal Electronic energy + Delta-G solvation = -30036.583878 eV Core-core repulsion = 26036.538848 eV Total energy + Delta-G solvation = -4000.045030 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -44.25283 -39.95730 -37.96724 -36.34529 -35.53047 -34.90081 -33.24909 -31.66017 -31.20390 -30.05144 -29.12796 -27.43959 -25.66198 -25.35890 -24.51936 -23.36971 -22.31256 -21.26572 -20.90317 -20.54188 -19.23438 -17.97919 -17.88084 -16.91117 -16.33153 -16.09958 -15.72848 -15.35366 -15.11080 -14.76009 -14.27093 -14.07738 -13.79928 -13.69704 -13.48554 -13.43359 -13.03787 -12.96856 -12.47740 -12.43176 -12.37789 -12.34904 -12.14520 -11.88012 -11.57834 -11.42793 -11.40347 -11.39435 -11.15299 -11.03144 -10.84574 -10.63705 -10.37194 -10.36068 -10.20799 -10.06286 -9.97450 -9.71973 -9.60004 -9.09361 -8.64397 -6.82217 -5.96045 -3.38112 1.11292 1.69843 2.21312 2.29176 3.01249 3.22843 3.31497 3.33916 3.71990 3.99206 4.30218 4.33835 4.37041 4.53172 4.72847 4.83763 4.97977 5.00470 5.17020 5.32730 5.37802 5.40619 5.40870 5.45742 5.50995 5.59494 5.62460 5.64176 5.67256 5.78150 5.92296 5.93455 5.99427 6.05039 6.11755 6.15649 6.21058 6.36143 6.43195 6.50454 6.66646 6.71995 6.88358 7.11620 7.32845 7.41210 7.63866 7.95427 8.27678 8.56495 9.04821 9.67656 10.25255 11.12147 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.003235 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.162681 B = 8654.131303 C = 9951.466508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.013 4.013 3 C -0.143 4.143 4 C 0.205 3.795 5 N -0.302 5.302 6 N -0.077 5.077 7 N -0.088 5.088 8 N -0.292 5.292 9 C 0.089 3.911 10 C 0.500 3.500 11 O -0.528 6.528 12 N -0.706 5.706 13 C 0.132 3.868 14 C -0.129 4.129 15 H 0.071 0.929 16 C -0.100 4.100 17 C -0.133 4.133 18 C 0.142 3.858 19 N -0.592 5.592 20 C -0.250 4.250 21 H 0.065 0.935 22 C 0.003 3.997 23 N -0.904 5.904 24 Si 0.899 3.101 25 H -0.286 1.286 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.180 3.820 29 H 0.069 0.931 30 H 0.073 0.927 31 H 0.062 0.938 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.070 0.930 35 H 0.057 0.943 36 H 0.143 0.857 37 H 0.142 0.858 38 H 0.410 0.590 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.057 0.943 42 H 0.048 0.952 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.018 0.982 46 H 0.053 0.947 47 H 0.253 0.747 48 H 0.086 0.914 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.053 3.155 7.585 8.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.035 4.035 3 C -0.201 4.201 4 C -0.073 4.073 5 N -0.151 5.151 6 N -0.070 5.070 7 N -0.073 5.073 8 N -0.092 5.092 9 C -0.037 4.037 10 C 0.282 3.718 11 O -0.405 6.405 12 N -0.358 5.358 13 C 0.008 3.992 14 C -0.149 4.149 15 H 0.089 0.911 16 C -0.138 4.138 17 C -0.172 4.172 18 C 0.016 3.984 19 N -0.315 5.315 20 C -0.380 4.380 21 H 0.083 0.917 22 C -0.195 4.195 23 N -0.549 5.549 24 Si 0.729 3.271 25 H -0.213 1.213 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.053 3.947 29 H 0.088 0.912 30 H 0.092 0.908 31 H 0.081 0.919 32 H 0.112 0.888 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.076 0.924 36 H 0.161 0.839 37 H 0.160 0.840 38 H 0.246 0.754 39 H 0.087 0.913 40 H 0.080 0.920 41 H 0.076 0.924 42 H 0.067 0.933 43 H 0.070 0.930 44 H 0.076 0.924 45 H 0.036 0.964 46 H 0.072 0.928 47 H 0.063 0.937 48 H 0.105 0.895 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -1.643 3.043 9.441 10.054 hybrid contribution 1.333 0.152 -1.634 2.114 sum -0.310 3.195 7.808 8.442 Atomic orbital electron populations 1.21816 0.91707 1.03273 1.03316 1.19829 0.97947 0.96080 0.89657 1.21846 1.01223 0.93406 1.03650 1.26102 0.94466 0.88729 0.97968 1.74932 1.19879 1.21926 0.98358 1.78572 1.06886 0.99077 1.22504 1.78863 1.20349 1.20821 0.87289 1.47845 1.34578 1.19998 1.06817 1.22048 0.99287 0.95955 0.86391 1.20177 0.87276 0.82894 0.81429 1.90799 1.26263 1.70625 1.52792 1.45910 1.24926 1.33955 1.31028 1.21485 0.92147 0.88532 0.97009 1.22174 0.99223 0.97504 0.96043 0.91053 1.21332 0.98601 0.96259 0.97648 1.21981 1.00236 0.97877 0.97097 1.20944 0.94733 0.88563 0.94147 1.44026 1.32856 1.27426 1.27144 1.19206 1.03538 0.91015 1.24241 0.91689 1.25016 0.98276 0.95926 1.00327 1.70045 1.33161 0.99527 1.52118 0.86354 0.84373 0.77669 0.78751 1.21314 1.21530 1.20477 1.20788 0.99253 0.91794 0.82838 0.91206 0.90762 0.91884 0.88788 0.90644 0.91062 0.92387 0.83923 0.83988 0.75448 0.91322 0.91962 0.92435 0.93348 0.92957 0.92378 0.96438 0.92828 0.93680 0.89540 0.96288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.41 9.17 37.15 0.34 -1.07 16 2 C -0.01 -0.13 3.26 -91.77 -0.30 -0.43 16 3 C -0.14 -1.14 9.18 37.16 0.34 -0.80 16 4 C 0.21 2.66 6.64 -155.43 -1.03 1.63 16 5 N -0.30 -4.65 12.36 32.70 0.40 -4.24 16 6 N -0.08 -1.28 13.43 60.35 0.81 -0.47 16 7 N -0.09 -1.37 13.29 60.35 0.80 -0.56 16 8 N -0.29 -3.80 2.83 -59.45 -0.17 -3.97 16 9 C 0.09 0.85 6.57 -5.20 -0.03 0.82 16 10 C 0.50 6.46 7.90 -10.98 -0.09 6.37 16 11 O -0.53 -9.06 16.43 5.56 0.09 -8.97 16 12 N -0.71 -8.81 5.33 -60.29 -0.32 -9.13 16 13 C 0.13 1.85 5.08 -4.04 -0.02 1.83 16 14 C -0.13 -2.01 2.38 -90.48 -0.22 -2.23 16 15 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 16 C -0.10 -1.48 5.17 -26.67 -0.14 -1.62 16 17 C -0.13 -2.07 6.08 -26.61 -0.16 -2.23 16 18 C 0.14 2.73 6.52 -3.72 -0.02 2.71 16 19 N -0.59 -13.31 3.00 -172.33 -0.52 -13.83 16 20 C -0.25 -6.24 9.58 -15.06 -0.14 -6.39 16 21 H 0.07 1.62 7.89 -52.48 -0.41 1.20 16 22 C 0.00 0.07 4.92 -17.43 -0.09 -0.02 16 23 N -0.90 -23.19 11.20 55.49 0.62 -22.57 16 24 Si 0.90 19.56 29.59 -169.99 -5.03 14.53 16 25 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 26 H -0.29 -6.25 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.01 7.11 56.52 0.40 -5.61 16 28 C 0.18 3.61 4.38 -3.71 -0.02 3.59 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.80 6.84 -51.93 -0.36 0.45 16 33 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.14 0.98 8.14 -51.93 -0.42 0.55 16 37 H 0.14 0.91 7.12 -51.93 -0.37 0.54 16 38 H 0.41 4.61 7.69 -40.82 -0.31 4.30 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 46 H 0.05 1.02 7.93 -51.93 -0.41 0.61 16 47 H 0.25 6.28 8.31 -40.82 -0.34 5.94 16 48 H 0.09 1.86 5.26 -51.93 -0.27 1.59 16 49 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 LS Contribution 396.91 15.07 5.98 5.98 Total: -1.00 -32.24 396.91 -6.94 -39.18 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -8.04 Total: 1.87 kcal Atomic # 6 Polarization: 3.76 SS G_CDS: -1.58 Total: 2.18 kcal Atomic # 7 Polarization: -56.41 SS G_CDS: 1.63 Total: -54.78 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.09 Total: -8.97 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -5.03 Total: 14.53 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.24 -6.94 -39.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690390280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.708 kcal (2) G-P(sol) polarization free energy of solvation -32.242 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.180 kcal (6) G-S(sol) free energy of system = (1) + (5) 85.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds