Wall clock time and date at job start Tue Mar 31 2020 19:50:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53005 * 109.47063 * 2 1 4 4 C 1.50694 * 109.47313 * 119.99857 * 2 1 3 5 5 N 1.31071 * 126.65922 * 300.17302 * 4 2 1 6 6 N 1.28842 * 107.98957 * 180.24136 * 5 4 2 7 7 N 1.28738 * 109.39895 * 359.75351 * 6 5 4 8 8 N 1.29025 * 108.80825 * 359.97438 * 7 6 5 9 9 C 1.46493 * 126.43759 * 179.97438 * 8 7 6 10 10 C 1.50702 * 109.47152 * 90.02536 * 9 8 7 11 11 O 1.21282 * 119.99725 * 359.97438 * 10 9 8 12 12 N 1.34777 * 120.00094 * 179.97438 * 10 9 8 13 13 C 1.46503 * 119.99929 * 180.02562 * 12 10 9 14 14 C 1.53004 * 109.47070 * 180.02562 * 13 12 10 15 15 H 1.08996 * 109.52404 * 55.07112 * 14 13 12 16 16 C 1.53075 * 109.61936 * 175.10456 * 14 13 12 17 17 C 1.53042 * 109.65345 * 181.16636 * 16 14 13 18 18 C 1.53184 * 109.31519 * 298.69965 * 17 16 14 19 19 N 1.46924 * 108.77817 * 54.63388 * 18 17 16 20 20 C 1.36942 * 120.63278 * 126.41448 * 19 18 17 21 21 H 1.08007 * 119.99636 * 331.81204 * 20 19 18 22 22 C 1.38806 * 120.00203 * 151.81256 * 20 19 18 23 23 N 1.31624 * 120.00191 * 343.08250 * 22 20 19 24 24 Si 1.86800 * 120.00146 * 163.07925 * 22 20 19 25 25 H 1.48503 * 109.47195 * 89.99708 * 24 22 20 26 26 H 1.48498 * 109.47355 * 210.00264 * 24 22 20 27 27 H 1.48504 * 109.46850 * 330.00278 * 24 22 20 28 28 C 1.46922 * 118.73925 * 306.39595 * 19 18 17 29 29 H 1.08999 * 109.47595 * 300.00273 * 1 2 3 30 30 H 1.09000 * 109.47450 * 60.00168 * 1 2 3 31 31 H 1.09003 * 109.47277 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47309 * 240.00166 * 2 1 3 33 33 H 1.09006 * 109.46869 * 299.99737 * 3 2 1 34 34 H 1.08996 * 109.46922 * 59.99929 * 3 2 1 35 35 H 1.08993 * 109.47285 * 180.02562 * 3 2 1 36 36 H 1.08995 * 109.47645 * 330.02526 * 9 8 7 37 37 H 1.09004 * 109.47060 * 210.02284 * 9 8 7 38 38 H 0.96995 * 120.00054 * 359.97438 * 12 10 9 39 39 H 1.08995 * 109.47266 * 59.99535 * 13 12 10 40 40 H 1.09004 * 109.46686 * 299.99755 * 13 12 10 41 41 H 1.08990 * 109.34912 * 61.14555 * 16 14 13 42 42 H 1.08998 * 109.43801 * 301.24577 * 16 14 13 43 43 H 1.09003 * 109.49717 * 178.74428 * 17 16 14 44 44 H 1.09001 * 109.49675 * 58.65327 * 17 16 14 45 45 H 1.09007 * 109.58736 * 294.84868 * 18 17 16 46 46 H 1.08996 * 109.70613 * 174.49205 * 18 17 16 47 47 H 0.96995 * 120.00379 * 180.02562 * 23 22 20 48 48 H 1.09003 * 109.58836 * 173.39251 * 28 19 18 49 49 H 1.08998 * 109.58900 * 293.67770 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 1.2304 5 7 1.7949 -0.3801 2.4764 6 7 2.4015 -1.2267 3.2350 7 7 3.0154 -2.0915 2.5051 8 7 2.8088 -1.8093 1.2632 9 6 3.3279 -2.5428 0.1062 10 6 2.3493 -3.6196 -0.2861 11 8 1.3199 -3.7607 0.3394 12 7 2.6181 -4.4259 -1.3322 13 6 1.6665 -5.4723 -1.7140 14 6 2.2087 -6.2385 -2.9223 15 1 3.2040 -6.6202 -2.6949 16 6 1.2777 -7.4089 -3.2487 17 6 1.8346 -8.1932 -4.4391 18 6 1.9039 -7.2748 -5.6631 19 7 2.6803 -6.0776 -5.3128 20 6 3.7520 -5.6936 -6.0739 21 1 4.3172 -6.4326 -6.6224 22 6 4.1119 -4.3547 -6.1404 23 7 3.2601 -3.4247 -5.7635 24 14 5.8052 -3.8725 -6.7647 25 1 5.7527 -3.6749 -8.2356 26 1 6.2330 -2.6099 -6.1105 27 1 6.7760 -4.9496 -6.4443 28 6 2.2847 -5.3000 -4.1307 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 1.6766 1.9564 -0.8901 34 1 1.6766 1.9563 0.8900 35 1 3.1299 1.4426 -0.0005 36 1 4.2844 -2.9975 0.3635 37 1 3.4652 -1.8551 -0.7282 38 1 3.4412 -4.3128 -1.8327 39 1 0.7100 -5.0174 -1.9711 40 1 1.5291 -6.1603 -0.8797 41 1 0.2885 -7.0250 -3.4976 42 1 1.2046 -8.0667 -2.3826 43 1 1.1816 -9.0388 -4.6552 44 1 2.8340 -8.5565 -4.1998 45 1 0.8960 -6.9830 -5.9586 46 1 2.3895 -7.7970 -6.4874 47 1 3.5114 -2.4890 -5.8103 48 1 3.0231 -4.5206 -3.9421 49 1 1.3091 -4.8452 -4.3020 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690390280.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:53 Heat of formation + Delta-G solvation = 64.475845 kcal Electronic energy + Delta-G solvation = -30037.496765 eV Core-core repulsion = 26036.538848 eV Total energy + Delta-G solvation = -4000.957917 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -45.32107 -41.06377 -39.37530 -37.20901 -36.58038 -36.15359 -34.83581 -32.83557 -32.46180 -31.60730 -30.17317 -28.14387 -27.25584 -26.75282 -25.50316 -24.46763 -23.83127 -22.51674 -22.00106 -21.53093 -20.63024 -19.06612 -18.84621 -18.62459 -17.43982 -17.09862 -16.82375 -16.72777 -16.29416 -15.81825 -15.62945 -15.40094 -15.12146 -14.91761 -14.54640 -14.50051 -14.22995 -14.01689 -13.96715 -13.77576 -13.57017 -13.20079 -13.11742 -12.89853 -12.86080 -12.72221 -12.52917 -12.49432 -12.33552 -12.31185 -12.21028 -11.95518 -11.92319 -11.78035 -11.54962 -11.41011 -11.17510 -11.07843 -10.94236 -10.50530 -10.21364 -8.61003 -7.82208 -5.27331 0.06763 0.78612 1.10229 1.28915 1.50523 1.55437 1.62824 2.02191 2.56018 2.84341 3.12146 3.30106 3.39607 3.57028 3.63554 3.86382 3.98784 4.00485 4.02646 4.08371 4.14562 4.17151 4.35173 4.35727 4.52063 4.60583 4.64654 4.75317 4.80164 4.80656 4.86954 4.87258 4.89260 4.92267 5.05400 5.10081 5.16413 5.19222 5.24604 5.31413 5.32047 5.38798 5.44997 5.57811 5.71868 5.81319 6.30534 6.45162 6.94688 7.21545 7.45692 7.90520 8.43456 9.23690 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.011687 B = 0.003235 C = 0.002813 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2395.162681 B = 8654.131303 C = 9951.466508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.015 4.015 3 C -0.138 4.138 4 C 0.210 3.790 5 N -0.325 5.325 6 N -0.105 5.105 7 N -0.102 5.102 8 N -0.290 5.290 9 C 0.086 3.914 10 C 0.503 3.497 11 O -0.574 6.574 12 N -0.700 5.700 13 C 0.140 3.860 14 C -0.112 4.112 15 H 0.074 0.926 16 C -0.100 4.100 17 C -0.122 4.122 18 C 0.135 3.865 19 N -0.611 5.611 20 C -0.266 4.266 21 H 0.059 0.941 22 C -0.036 4.036 23 N -0.927 5.927 24 Si 0.958 3.042 25 H -0.295 1.295 26 H -0.284 1.284 27 H -0.275 1.275 28 C 0.189 3.811 29 H 0.063 0.937 30 H 0.097 0.903 31 H 0.038 0.962 32 H 0.111 0.889 33 H 0.096 0.904 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.176 0.824 37 H 0.180 0.820 38 H 0.417 0.583 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.079 0.921 44 H 0.057 0.943 45 H 0.009 0.991 46 H 0.049 0.951 47 H 0.253 0.747 48 H 0.071 0.929 49 H -0.011 1.011 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.056 2.943 7.206 7.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.036 4.036 3 C -0.196 4.196 4 C -0.068 4.068 5 N -0.174 5.174 6 N -0.099 5.099 7 N -0.088 5.088 8 N -0.091 5.091 9 C -0.038 4.038 10 C 0.287 3.713 11 O -0.454 6.454 12 N -0.352 5.352 13 C 0.016 3.984 14 C -0.132 4.132 15 H 0.093 0.907 16 C -0.138 4.138 17 C -0.161 4.161 18 C 0.010 3.990 19 N -0.334 5.334 20 C -0.396 4.396 21 H 0.077 0.923 22 C -0.233 4.233 23 N -0.572 5.572 24 Si 0.786 3.214 25 H -0.222 1.222 26 H -0.209 1.209 27 H -0.200 1.200 28 C 0.063 3.937 29 H 0.082 0.918 30 H 0.115 0.885 31 H 0.057 0.943 32 H 0.129 0.871 33 H 0.114 0.886 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.193 0.807 37 H 0.197 0.803 38 H 0.255 0.745 39 H 0.073 0.927 40 H 0.089 0.911 41 H 0.072 0.928 42 H 0.095 0.905 43 H 0.098 0.902 44 H 0.076 0.924 45 H 0.027 0.973 46 H 0.067 0.933 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.007 0.993 Dipole moment (debyes) X Y Z Total from point charges -0.516 2.806 9.052 9.491 hybrid contribution 0.925 0.175 -1.641 1.892 sum 0.409 2.981 7.412 7.999 Atomic orbital electron populations 1.21801 0.91959 1.01907 1.04175 1.20088 0.97676 0.97139 0.88726 1.21838 1.01575 0.91991 1.04232 1.26687 0.93454 0.88483 0.98219 1.74858 1.20575 1.22449 0.99487 1.78532 1.07912 0.99882 1.23525 1.78767 1.20701 1.20896 0.88402 1.48053 1.34267 1.19995 1.06770 1.22454 0.99082 0.95767 0.86486 1.20637 0.87055 0.83003 0.80584 1.90791 1.28394 1.71947 1.54236 1.45836 1.24843 1.33529 1.30968 1.21292 0.91779 0.88838 0.96478 1.21926 0.99882 0.96988 0.94443 0.90743 1.21361 0.97922 0.96159 0.98403 1.21859 1.00982 0.97792 0.95427 1.21098 0.93653 0.88256 0.96028 1.44313 1.32870 1.28393 1.27839 1.19440 1.04376 0.91252 1.24567 0.92321 1.25598 1.00961 0.95809 1.00889 1.70162 1.34422 0.99597 1.53064 0.85446 0.80962 0.77465 0.77478 1.22242 1.20924 1.20004 1.20618 0.96873 0.92230 0.83938 0.91820 0.88466 0.94269 0.87082 0.88570 0.91970 0.91796 0.80690 0.80272 0.74518 0.92709 0.91068 0.92804 0.90512 0.90248 0.92424 0.97339 0.93290 0.93785 0.91036 0.99340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.65 9.17 71.98 0.66 -1.99 16 2 C -0.01 -0.26 3.26 -11.54 -0.04 -0.30 16 3 C -0.14 -1.90 9.18 71.98 0.66 -1.24 16 4 C 0.21 5.26 6.64 138.13 0.92 6.18 16 5 N -0.32 -10.02 12.36 -50.46 -0.62 -10.65 16 6 N -0.10 -3.54 13.43 37.01 0.50 -3.04 16 7 N -0.10 -3.12 13.29 37.02 0.49 -2.63 16 8 N -0.29 -7.19 2.83 -342.00 -0.97 -8.16 16 9 C 0.09 1.44 6.57 85.63 0.56 2.00 16 10 C 0.50 12.25 7.90 87.66 0.69 12.94 16 11 O -0.57 -19.45 16.43 -3.03 -0.05 -19.50 16 12 N -0.70 -16.37 5.33 -463.05 -2.47 -18.84 16 13 C 0.14 3.77 5.08 86.38 0.44 4.21 16 14 C -0.11 -3.34 2.38 -10.70 -0.03 -3.37 16 15 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 16 C -0.10 -2.74 5.17 30.63 0.16 -2.58 16 17 C -0.12 -3.53 6.08 30.67 0.19 -3.34 16 18 C 0.14 5.12 6.52 86.36 0.56 5.69 16 19 N -0.61 -27.42 3.00 -699.11 -2.09 -29.51 16 20 C -0.27 -13.25 9.58 84.03 0.81 -12.45 16 21 H 0.06 2.92 7.89 -2.91 -0.02 2.90 16 22 C -0.04 -1.79 4.92 84.86 0.42 -1.38 16 23 N -0.93 -47.41 11.20 21.65 0.24 -47.17 16 24 Si 0.96 39.67 29.59 68.60 2.03 41.70 16 25 H -0.30 -12.58 7.11 99.48 0.71 -11.87 16 26 H -0.28 -11.39 7.11 99.48 0.71 -10.68 16 27 H -0.27 -11.07 7.11 99.48 0.71 -10.37 16 28 C 0.19 7.58 4.38 86.36 0.38 7.96 16 29 H 0.06 1.27 8.14 -2.39 -0.02 1.25 16 30 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.04 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.11 1.60 6.84 -2.39 -0.02 1.58 16 33 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 34 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.18 1.81 8.14 -2.39 -0.02 1.79 16 37 H 0.18 1.65 7.12 -2.39 -0.02 1.63 16 38 H 0.42 8.60 7.69 -92.71 -0.71 7.88 16 39 H 0.05 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 41 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 42 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 43 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 44 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 45 H 0.01 0.34 8.14 -2.38 -0.02 0.32 16 46 H 0.05 1.85 7.93 -2.39 -0.02 1.83 16 47 H 0.25 12.41 8.31 -92.71 -0.77 11.64 16 48 H 0.07 3.06 5.26 -2.39 -0.01 3.05 16 49 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 Total: -1.00 -71.41 396.91 3.67 -67.74 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.24 Total: 17.74 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: 6.38 Total: 12.33 kcal Atomic # 7 Polarization: -115.08 SS G_CDS: -4.92 Total: -120.00 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.05 Total: -19.50 kcal Atomic # 14 Polarization: 39.67 SS G_CDS: 2.03 Total: 41.70 kcal Total: -71.41 3.67 -67.74 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690390280.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.211 kcal (2) G-P(sol) polarization free energy of solvation -71.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.735 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds