Wall clock time and date at job start Tue Mar 31 2020 19:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.50701 * 109.47487 * 240.00009 * 2 1 3 5 5 N 1.31069 * 126.65921 * 59.68220 * 4 2 1 6 6 N 1.28841 * 107.98931 * 179.89829 * 5 4 2 7 7 N 1.28737 * 109.39608 * 0.38238 * 6 5 4 8 8 N 1.29019 * 108.81346 * 359.76160 * 7 6 5 9 9 C 1.46496 * 126.44350 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46831 * 269.97514 * 9 8 7 11 11 O 1.21281 * 120.00448 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99843 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99957 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47168 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.49558 * 305.06586 * 14 13 12 16 16 C 1.53037 * 109.49670 * 185.00020 * 14 13 12 17 17 C 1.53044 * 109.53974 * 178.68107 * 16 14 13 18 18 C 1.53201 * 109.30772 * 61.36659 * 17 16 14 19 19 N 1.46931 * 108.77392 * 305.36674 * 18 17 16 20 20 C 1.36934 * 120.62774 * 233.60761 * 19 18 17 21 21 H 1.08006 * 119.99728 * 151.82717 * 20 19 18 22 22 C 1.38815 * 120.00247 * 331.83103 * 20 19 18 23 23 N 1.31620 * 119.99897 * 343.07435 * 22 20 19 24 24 Si 1.86800 * 120.00272 * 163.07640 * 22 20 19 25 25 H 1.48493 * 109.47021 * 89.99735 * 24 22 20 26 26 H 1.48500 * 109.47323 * 210.00325 * 24 22 20 27 27 H 1.48510 * 109.46870 * 329.99769 * 24 22 20 28 28 C 1.46926 * 118.74022 * 53.61244 * 19 18 17 29 29 H 1.09006 * 109.47048 * 60.00160 * 1 2 3 30 30 H 1.09001 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47515 * 300.00404 * 1 2 3 32 32 H 1.09006 * 109.47048 * 119.99840 * 2 1 3 33 33 H 1.09003 * 109.47577 * 59.99607 * 3 2 1 34 34 H 1.09003 * 109.47622 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.47025 * 299.99854 * 3 2 1 36 36 H 1.08996 * 109.47515 * 29.97292 * 9 8 7 37 37 H 1.09001 * 109.47376 * 149.98054 * 9 8 7 38 38 H 0.96997 * 119.99733 * 359.97438 * 12 10 9 39 39 H 1.09006 * 109.47041 * 300.00346 * 13 12 10 40 40 H 1.09008 * 109.47176 * 59.99967 * 13 12 10 41 41 H 1.09001 * 109.46239 * 298.70338 * 16 14 13 42 42 H 1.09005 * 109.46035 * 58.67677 * 16 14 13 43 43 H 1.08998 * 109.49931 * 181.31190 * 17 16 14 44 44 H 1.08998 * 109.49738 * 301.42129 * 17 16 14 45 45 H 1.08995 * 109.58484 * 65.14976 * 18 17 16 46 46 H 1.08992 * 109.58626 * 185.57987 * 18 17 16 47 47 H 0.96996 * 120.00318 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.58655 * 186.60452 * 28 19 18 49 49 H 1.08998 * 109.58699 * 66.17328 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7929 -0.3817 -2.4764 6 7 2.3979 -1.2295 -3.2349 7 7 3.0105 -2.0951 -2.5050 8 7 2.8092 -1.8091 -1.2631 9 6 3.3290 -2.5420 -0.1061 10 6 2.3471 -3.6137 0.2921 11 8 1.3146 -3.7514 -0.3291 12 7 2.6164 -4.4192 1.3386 13 6 1.6616 -5.4606 1.7261 14 6 2.2045 -6.2262 2.9344 15 1 3.1984 -6.6104 2.7051 16 6 1.2693 -7.3923 3.2625 17 6 1.8286 -8.1784 4.4506 18 6 1.9046 -7.2604 5.6747 19 7 2.6828 -6.0651 5.3218 20 6 3.7584 -5.6843 6.0788 21 1 4.5717 -5.1374 5.6248 22 6 3.8037 -6.0012 7.4295 23 7 2.7044 -6.3593 8.0586 24 14 5.4246 -5.9193 8.3544 25 1 5.6024 -4.5587 8.9219 26 1 5.4181 -6.9174 9.4539 27 1 6.5418 -6.2169 7.4223 28 6 2.2848 -5.2861 4.1413 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 4.2828 -3.0014 -0.3654 37 1 3.4720 -1.8529 0.7263 38 1 3.4423 -4.3093 1.8352 39 1 0.7081 -5.0009 1.9861 40 1 1.5178 -6.1496 0.8936 41 1 0.2819 -7.0059 3.5152 42 1 1.1912 -8.0499 2.3967 43 1 1.1742 -9.0223 4.6689 44 1 2.8262 -8.5441 4.2076 45 1 0.8986 -6.9662 5.9739 46 1 2.3933 -7.7854 6.4953 47 1 2.7360 -6.5811 9.0023 48 1 3.0244 -4.5086 3.9502 49 1 1.3098 -4.8311 4.3155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690390281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:59 Heat of formation + Delta-G solvation = 86.633710 kcal Electronic energy + Delta-G solvation = -29554.928454 eV Core-core repulsion = 25554.931374 eV Total energy + Delta-G solvation = -3999.997080 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -44.38012 -40.14705 -38.02421 -36.48370 -35.66670 -35.07898 -33.21096 -31.73083 -30.87698 -30.56043 -29.21117 -27.57137 -25.66825 -25.34835 -24.65126 -23.49046 -22.27307 -21.39111 -21.04715 -20.70151 -19.27477 -18.14915 -18.03854 -16.82755 -16.45651 -16.25841 -15.90317 -15.47893 -14.98849 -14.93866 -14.60506 -14.14390 -13.88472 -13.62468 -13.60454 -13.56621 -13.12266 -12.93487 -12.56122 -12.49796 -12.48364 -12.31276 -12.26248 -12.01038 -11.71105 -11.55882 -11.54204 -11.44569 -11.15957 -11.12988 -10.81983 -10.65125 -10.40469 -10.34564 -10.28632 -10.13247 -10.02884 -9.71655 -9.56320 -9.29525 -8.58170 -6.79944 -5.90838 -3.34657 0.97813 1.55896 2.08955 2.11031 2.81416 3.27603 3.35800 3.36651 3.57898 3.83281 4.12123 4.17395 4.36228 4.37000 4.58768 4.70130 4.84834 4.90280 5.13467 5.19695 5.27414 5.27628 5.31112 5.37652 5.46246 5.47614 5.49831 5.53712 5.66802 5.73830 5.80278 5.82700 5.86808 5.92408 6.06218 6.09257 6.21391 6.23971 6.44027 6.56387 6.62293 6.72454 6.80131 7.11103 7.28361 7.55888 7.66275 7.75864 8.32233 8.44511 9.08246 9.71730 10.28299 11.17366 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002518 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.128693 B =11115.708478 C =11939.430956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.012 4.012 3 C -0.144 4.144 4 C 0.204 3.796 5 N -0.301 5.301 6 N -0.075 5.075 7 N -0.087 5.087 8 N -0.294 5.294 9 C 0.090 3.910 10 C 0.498 3.502 11 O -0.524 6.524 12 N -0.711 5.711 13 C 0.128 3.872 14 C -0.118 4.118 15 H 0.075 0.925 16 C -0.100 4.100 17 C -0.142 4.142 18 C 0.169 3.831 19 N -0.591 5.591 20 C -0.258 4.258 21 H 0.064 0.936 22 C 0.005 3.995 23 N -0.900 5.900 24 Si 0.901 3.099 25 H -0.287 1.287 26 H -0.289 1.289 27 H -0.279 1.279 28 C 0.154 3.846 29 H 0.070 0.930 30 H 0.062 0.938 31 H 0.074 0.926 32 H 0.092 0.908 33 H 0.075 0.925 34 H 0.057 0.943 35 H 0.071 0.929 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.407 0.593 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.050 0.950 44 H 0.054 0.946 45 H 0.018 0.982 46 H 0.086 0.914 47 H 0.255 0.745 48 H 0.049 0.951 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 8.872 -12.076 14.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.034 4.034 3 C -0.202 4.202 4 C -0.074 4.074 5 N -0.150 5.150 6 N -0.068 5.068 7 N -0.072 5.072 8 N -0.094 5.094 9 C -0.036 4.036 10 C 0.281 3.719 11 O -0.400 6.400 12 N -0.363 5.363 13 C 0.004 3.996 14 C -0.139 4.139 15 H 0.093 0.907 16 C -0.138 4.138 17 C -0.181 4.181 18 C 0.043 3.957 19 N -0.313 5.313 20 C -0.387 4.387 21 H 0.082 0.918 22 C -0.194 4.194 23 N -0.544 5.544 24 Si 0.731 3.269 25 H -0.214 1.214 26 H -0.215 1.215 27 H -0.205 1.205 28 C 0.027 3.973 29 H 0.089 0.911 30 H 0.081 0.919 31 H 0.092 0.908 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.076 0.924 35 H 0.090 0.910 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.243 0.757 39 H 0.088 0.912 40 H 0.084 0.916 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.036 0.964 46 H 0.105 0.895 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges -0.674 8.543 -13.762 16.212 hybrid contribution 1.273 -0.190 1.820 2.229 sum 0.600 8.353 -11.942 14.586 Atomic orbital electron populations 1.21828 0.91660 1.03303 1.03430 1.19821 0.97961 0.96076 0.89536 1.21855 1.01224 0.93370 1.03751 1.26109 0.94433 0.88822 0.98002 1.74946 1.19739 1.21919 0.98353 1.78596 1.06847 0.98939 1.22435 1.78879 1.20355 1.20736 0.87232 1.47852 1.34770 1.19991 1.06826 1.22032 0.99264 0.95873 0.86451 1.20235 0.87399 0.82923 0.81376 1.90819 1.26087 1.70369 1.52700 1.45948 1.24548 1.34472 1.31354 1.21576 0.91987 0.88728 0.97274 1.21990 0.99854 0.97346 0.94733 0.90679 1.21340 0.98332 0.96011 0.98106 1.22174 0.99825 0.98458 0.97650 1.20807 0.94720 0.86580 0.93593 1.44024 1.33546 1.25605 1.28145 1.19112 0.95467 1.34503 0.89646 0.91791 1.25055 0.96794 1.01375 0.96221 1.70027 1.25372 1.49630 1.09344 0.86326 0.83555 0.77512 0.79513 1.21351 1.21505 1.20468 1.20891 0.97486 0.92090 0.86796 0.91104 0.91869 0.90753 0.88974 0.90642 0.92357 0.90978 0.83823 0.84087 0.75709 0.91171 0.91593 0.92419 0.93384 0.93083 0.92702 0.96388 0.89535 0.93513 0.93219 0.96341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.18 9.18 37.15 0.34 -0.84 16 2 C -0.01 -0.09 3.26 -91.77 -0.30 -0.39 16 3 C -0.14 -0.89 9.17 37.16 0.34 -0.55 16 4 C 0.20 2.30 6.64 -155.43 -1.03 1.27 16 5 N -0.30 -4.23 12.36 32.70 0.40 -3.82 16 6 N -0.07 -1.15 13.43 60.35 0.81 -0.34 16 7 N -0.09 -1.23 13.29 60.35 0.80 -0.42 16 8 N -0.29 -3.30 2.83 -59.44 -0.17 -3.47 16 9 C 0.09 0.65 6.57 -5.19 -0.03 0.61 16 10 C 0.50 5.28 7.90 -10.98 -0.09 5.19 16 11 O -0.52 -8.04 16.43 5.56 0.09 -7.95 16 12 N -0.71 -6.91 5.33 -60.29 -0.32 -7.23 16 13 C 0.13 1.54 5.07 -4.04 -0.02 1.52 16 14 C -0.12 -1.67 2.37 -90.50 -0.21 -1.89 16 15 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 16 C -0.10 -1.48 5.17 -26.69 -0.14 -1.61 16 17 C -0.14 -2.46 6.08 -26.60 -0.16 -2.63 16 18 C 0.17 3.73 5.30 -3.70 -0.02 3.71 16 19 N -0.59 -13.35 2.99 -172.31 -0.52 -13.87 16 20 C -0.26 -6.47 9.58 -15.06 -0.14 -6.61 16 21 H 0.06 1.54 7.89 -52.48 -0.41 1.13 16 22 C 0.00 0.12 4.92 -17.43 -0.09 0.04 16 23 N -0.90 -24.79 11.20 55.49 0.62 -24.16 16 24 Si 0.90 20.31 29.59 -169.99 -5.03 15.28 16 25 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 27 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 28 C 0.15 2.71 5.60 -3.71 -0.02 2.69 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.09 0.55 6.85 -51.93 -0.36 0.19 16 33 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 35 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.14 0.66 8.14 -51.93 -0.42 0.23 16 37 H 0.14 0.47 7.13 -51.93 -0.37 0.10 16 38 H 0.41 3.09 7.71 -40.82 -0.31 2.78 16 39 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 0.82 8.14 -51.92 -0.42 0.39 16 41 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 42 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 43 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 44 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.09 2.18 6.06 -51.93 -0.31 1.86 16 47 H 0.25 6.81 8.31 -40.82 -0.34 6.47 16 48 H 0.05 0.80 7.14 -51.93 -0.37 0.43 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 LS Contribution 396.94 15.07 5.98 5.98 Total: -1.00 -33.98 396.94 -6.94 -40.91 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.04 Total: -1.43 kcal Atomic # 6 Polarization: 2.09 SS G_CDS: -1.58 Total: 0.52 kcal Atomic # 7 Polarization: -54.95 SS G_CDS: 1.63 Total: -53.32 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 20.31 SS G_CDS: -5.03 Total: 15.28 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.98 -6.94 -40.91 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690390281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.549 kcal (2) G-P(sol) polarization free energy of solvation -33.976 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.939 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 86.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds