Wall clock time and date at job start Tue Mar 31 2020 19:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.47129 * 2 1 4 4 C 1.50701 * 109.47487 * 240.00009 * 2 1 3 5 5 N 1.31069 * 126.65921 * 59.68220 * 4 2 1 6 6 N 1.28841 * 107.98931 * 179.89829 * 5 4 2 7 7 N 1.28737 * 109.39608 * 0.38238 * 6 5 4 8 8 N 1.29019 * 108.81346 * 359.76160 * 7 6 5 9 9 C 1.46496 * 126.44350 * 180.02562 * 8 7 6 10 10 C 1.50703 * 109.46831 * 269.97514 * 9 8 7 11 11 O 1.21281 * 120.00448 * 359.97438 * 10 9 8 12 12 N 1.34782 * 119.99843 * 179.97438 * 10 9 8 13 13 C 1.46499 * 119.99957 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47168 * 180.02562 * 13 12 10 15 15 H 1.09002 * 109.49558 * 305.06586 * 14 13 12 16 16 C 1.53037 * 109.49670 * 185.00020 * 14 13 12 17 17 C 1.53044 * 109.53974 * 178.68107 * 16 14 13 18 18 C 1.53201 * 109.30772 * 61.36659 * 17 16 14 19 19 N 1.46931 * 108.77392 * 305.36674 * 18 17 16 20 20 C 1.36934 * 120.62774 * 233.60761 * 19 18 17 21 21 H 1.08006 * 119.99728 * 151.82717 * 20 19 18 22 22 C 1.38815 * 120.00247 * 331.83103 * 20 19 18 23 23 N 1.31620 * 119.99897 * 343.07435 * 22 20 19 24 24 Si 1.86800 * 120.00272 * 163.07640 * 22 20 19 25 25 H 1.48493 * 109.47021 * 89.99735 * 24 22 20 26 26 H 1.48500 * 109.47323 * 210.00325 * 24 22 20 27 27 H 1.48510 * 109.46870 * 329.99769 * 24 22 20 28 28 C 1.46926 * 118.74022 * 53.61244 * 19 18 17 29 29 H 1.09006 * 109.47048 * 60.00160 * 1 2 3 30 30 H 1.09001 * 109.47213 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47515 * 300.00404 * 1 2 3 32 32 H 1.09006 * 109.47048 * 119.99840 * 2 1 3 33 33 H 1.09003 * 109.47577 * 59.99607 * 3 2 1 34 34 H 1.09003 * 109.47622 * 179.97438 * 3 2 1 35 35 H 1.09006 * 109.47025 * 299.99854 * 3 2 1 36 36 H 1.08996 * 109.47515 * 29.97292 * 9 8 7 37 37 H 1.09001 * 109.47376 * 149.98054 * 9 8 7 38 38 H 0.96997 * 119.99733 * 359.97438 * 12 10 9 39 39 H 1.09006 * 109.47041 * 300.00346 * 13 12 10 40 40 H 1.09008 * 109.47176 * 59.99967 * 13 12 10 41 41 H 1.09001 * 109.46239 * 298.70338 * 16 14 13 42 42 H 1.09005 * 109.46035 * 58.67677 * 16 14 13 43 43 H 1.08998 * 109.49931 * 181.31190 * 17 16 14 44 44 H 1.08998 * 109.49738 * 301.42129 * 17 16 14 45 45 H 1.08995 * 109.58484 * 65.14976 * 18 17 16 46 46 H 1.08992 * 109.58626 * 185.57987 * 18 17 16 47 47 H 0.96996 * 120.00318 * 179.97438 * 23 22 20 48 48 H 1.09002 * 109.58655 * 186.60452 * 28 19 18 49 49 H 1.08998 * 109.58699 * 66.17328 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 7 1.7929 -0.3817 -2.4764 6 7 2.3979 -1.2295 -3.2349 7 7 3.0105 -2.0951 -2.5050 8 7 2.8092 -1.8091 -1.2631 9 6 3.3290 -2.5420 -0.1061 10 6 2.3471 -3.6137 0.2921 11 8 1.3146 -3.7514 -0.3291 12 7 2.6164 -4.4192 1.3386 13 6 1.6616 -5.4606 1.7261 14 6 2.2045 -6.2262 2.9344 15 1 3.1984 -6.6104 2.7051 16 6 1.2693 -7.3923 3.2625 17 6 1.8286 -8.1784 4.4506 18 6 1.9046 -7.2604 5.6747 19 7 2.6828 -6.0651 5.3218 20 6 3.7584 -5.6843 6.0788 21 1 4.5717 -5.1374 5.6248 22 6 3.8037 -6.0012 7.4295 23 7 2.7044 -6.3593 8.0586 24 14 5.4246 -5.9193 8.3544 25 1 5.6024 -4.5587 8.9219 26 1 5.4181 -6.9174 9.4539 27 1 6.5418 -6.2169 7.4223 28 6 2.2848 -5.2861 4.1413 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5139 0.8899 32 1 1.8933 -0.5138 0.8900 33 1 1.6766 1.9564 0.8899 34 1 3.1300 1.4426 0.0005 35 1 1.6766 1.9563 -0.8900 36 1 4.2828 -3.0014 -0.3654 37 1 3.4720 -1.8529 0.7263 38 1 3.4423 -4.3093 1.8352 39 1 0.7081 -5.0009 1.9861 40 1 1.5178 -6.1496 0.8936 41 1 0.2819 -7.0059 3.5152 42 1 1.1912 -8.0499 2.3967 43 1 1.1742 -9.0223 4.6689 44 1 2.8262 -8.5441 4.2076 45 1 0.8986 -6.9662 5.9739 46 1 2.3933 -7.7854 6.4953 47 1 2.7360 -6.5811 9.0023 48 1 3.0244 -4.5086 3.9502 49 1 1.3098 -4.8311 4.3155 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690390281.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:58 Heat of formation + Delta-G solvation = 63.298402 kcal Electronic energy + Delta-G solvation = -29555.940349 eV Core-core repulsion = 25554.931374 eV Total energy + Delta-G solvation = -4001.008975 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -45.29883 -41.06191 -39.39249 -37.19006 -36.59153 -36.21607 -34.72678 -32.64133 -32.27783 -32.10490 -30.11580 -28.12075 -27.22944 -26.71402 -25.48654 -24.44551 -23.79354 -22.62300 -21.99933 -21.51859 -20.64702 -19.07610 -18.82835 -18.54168 -17.41294 -17.03093 -16.87446 -16.68770 -16.30792 -15.92730 -15.62829 -15.45407 -15.05950 -14.93589 -14.53631 -14.46668 -14.20515 -14.01363 -13.92650 -13.74990 -13.53935 -13.16524 -13.10105 -12.98391 -12.85774 -12.69695 -12.50113 -12.47749 -12.30924 -12.28680 -12.25345 -11.96621 -11.90056 -11.80424 -11.56869 -11.41065 -11.17796 -11.07572 -10.92658 -10.50101 -10.21707 -8.64294 -7.83648 -5.29133 0.08923 0.82944 1.12757 1.31328 1.49501 1.52682 1.60472 2.01959 2.54099 2.87130 3.15010 3.32327 3.42214 3.60823 3.62261 3.91124 4.00210 4.01079 4.02201 4.05065 4.07035 4.19445 4.37402 4.41142 4.57179 4.61862 4.63788 4.77093 4.78203 4.82751 4.88312 4.89785 4.92026 4.94802 5.01770 5.12354 5.13763 5.19375 5.27175 5.32305 5.34813 5.36177 5.45936 5.60348 5.70159 5.80587 6.32955 6.42722 6.98992 7.18194 7.48079 7.90266 8.42247 9.22788 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002518 C = 0.002345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.128693 B =11115.708478 C =11939.430956 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.013 4.013 3 C -0.140 4.140 4 C 0.209 3.791 5 N -0.329 5.329 6 N -0.107 5.107 7 N -0.103 5.103 8 N -0.291 5.291 9 C 0.085 3.915 10 C 0.502 3.498 11 O -0.576 6.576 12 N -0.700 5.700 13 C 0.139 3.861 14 C -0.100 4.100 15 H 0.081 0.919 16 C -0.099 4.099 17 C -0.130 4.130 18 C 0.172 3.828 19 N -0.609 5.609 20 C -0.257 4.257 21 H 0.077 0.923 22 C -0.053 4.053 23 N -0.938 5.938 24 Si 0.963 3.037 25 H -0.285 1.285 26 H -0.301 1.301 27 H -0.267 1.267 28 C 0.152 3.848 29 H 0.058 0.942 30 H 0.039 0.961 31 H 0.098 0.902 32 H 0.119 0.881 33 H 0.097 0.903 34 H 0.065 0.935 35 H 0.057 0.943 36 H 0.176 0.824 37 H 0.189 0.811 38 H 0.421 0.579 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.053 0.947 42 H 0.076 0.924 43 H 0.064 0.936 44 H 0.054 0.946 45 H -0.009 1.009 46 H 0.049 0.951 47 H 0.247 0.753 48 H 0.068 0.932 49 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.650 9.661 -12.382 15.791 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.034 4.034 3 C -0.198 4.198 4 C -0.069 4.069 5 N -0.177 5.177 6 N -0.101 5.101 7 N -0.089 5.089 8 N -0.092 5.092 9 C -0.039 4.039 10 C 0.286 3.714 11 O -0.455 6.455 12 N -0.353 5.353 13 C 0.015 3.985 14 C -0.121 4.121 15 H 0.099 0.901 16 C -0.137 4.137 17 C -0.169 4.169 18 C 0.047 3.953 19 N -0.332 5.332 20 C -0.387 4.387 21 H 0.095 0.905 22 C -0.249 4.249 23 N -0.584 5.584 24 Si 0.792 3.208 25 H -0.212 1.212 26 H -0.228 1.228 27 H -0.191 1.191 28 C 0.027 3.973 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.117 0.883 32 H 0.137 0.863 33 H 0.115 0.885 34 H 0.084 0.916 35 H 0.076 0.924 36 H 0.194 0.806 37 H 0.206 0.794 38 H 0.259 0.741 39 H 0.079 0.921 40 H 0.086 0.914 41 H 0.072 0.928 42 H 0.094 0.906 43 H 0.083 0.917 44 H 0.072 0.928 45 H 0.009 0.991 46 H 0.068 0.932 47 H 0.056 0.944 48 H 0.086 0.914 49 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 1.042 9.340 -14.084 16.932 hybrid contribution 0.697 -0.436 1.949 2.116 sum 1.740 8.903 -12.135 15.151 Atomic orbital electron populations 1.21815 0.92192 1.01913 1.04099 1.20108 0.97443 0.97063 0.88820 1.21849 1.01674 0.92105 1.04137 1.26734 0.93341 0.88576 0.98206 1.74860 1.20579 1.22562 0.99738 1.78554 1.08043 0.99866 1.23621 1.78768 1.20724 1.20810 0.88562 1.48100 1.34333 1.19948 1.06798 1.22532 0.98886 0.95887 0.86573 1.20710 0.87090 0.83045 0.80528 1.90817 1.28489 1.71842 1.54341 1.45787 1.24566 1.33667 1.31244 1.21286 0.91941 0.89078 0.96190 1.21733 1.00161 0.96417 0.93772 0.90078 1.21341 0.98038 0.96469 0.97853 1.21998 1.00419 0.98100 0.96427 1.20610 0.92665 0.87312 0.94758 1.44299 1.33247 1.26486 1.29178 1.19559 0.96346 1.32960 0.89836 0.90546 1.25794 0.99395 1.02285 0.97381 1.70192 1.27323 1.51834 1.09074 0.85347 0.80492 0.76943 0.78067 1.21178 1.22759 1.19130 1.21064 0.97251 0.92863 0.86166 0.92247 0.94189 0.88326 0.86282 0.88450 0.91603 0.92409 0.80626 0.79418 0.74074 0.92110 0.91350 0.92776 0.90567 0.91700 0.92759 0.99057 0.93247 0.94364 0.91368 0.97490 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.18 71.98 0.66 -1.47 16 2 C -0.01 -0.17 3.26 -11.54 -0.04 -0.20 16 3 C -0.14 -1.34 9.17 71.98 0.66 -0.68 16 4 C 0.21 4.42 6.64 138.13 0.92 5.34 16 5 N -0.33 -9.22 12.36 -50.45 -0.62 -9.84 16 6 N -0.11 -3.35 13.43 37.01 0.50 -2.85 16 7 N -0.10 -2.82 13.29 37.02 0.49 -2.33 16 8 N -0.29 -5.94 2.83 -341.98 -0.97 -6.90 16 9 C 0.08 0.89 6.57 85.63 0.56 1.45 16 10 C 0.50 9.17 7.90 87.66 0.69 9.86 16 11 O -0.58 -16.85 16.43 -3.03 -0.05 -16.90 16 12 N -0.70 -11.15 5.33 -463.03 -2.47 -13.62 16 13 C 0.14 2.96 5.07 86.38 0.44 3.40 16 14 C -0.10 -2.55 2.37 -10.72 -0.03 -2.58 16 15 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 16 C -0.10 -2.69 5.17 30.62 0.16 -2.54 16 17 C -0.13 -4.37 6.08 30.68 0.19 -4.18 16 18 C 0.17 7.74 5.30 86.36 0.46 8.19 16 19 N -0.61 -27.11 2.99 -699.08 -2.09 -29.21 16 20 C -0.26 -12.65 9.58 84.03 0.81 -11.84 16 21 H 0.08 3.50 7.89 -2.91 -0.02 3.48 16 22 C -0.05 -2.78 4.92 84.86 0.42 -2.37 16 23 N -0.94 -53.09 11.20 21.65 0.24 -52.85 16 24 Si 0.96 41.72 29.59 68.60 2.03 43.75 16 25 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 26 H -0.30 -13.47 7.11 99.48 0.71 -12.76 16 27 H -0.27 -10.85 7.11 99.48 0.71 -10.15 16 28 C 0.15 5.04 5.60 86.36 0.48 5.52 16 29 H 0.06 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.12 0.90 6.85 -2.38 -0.02 0.89 16 33 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 35 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 36 H 0.18 0.78 8.14 -2.39 -0.02 0.76 16 37 H 0.19 0.18 7.13 -2.39 -0.02 0.17 16 38 H 0.42 4.51 7.71 -92.71 -0.71 3.79 16 39 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 40 H 0.07 1.49 8.14 -2.38 -0.02 1.48 16 41 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 42 H 0.08 1.71 8.14 -2.38 -0.02 1.69 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 45 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 46 H 0.05 2.57 6.06 -2.39 -0.01 2.56 16 47 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 48 H 0.07 1.97 7.14 -2.39 -0.02 1.96 16 49 H 0.01 0.26 8.14 -2.39 -0.02 0.24 16 Total: -1.00 -78.17 396.94 3.67 -74.50 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.24 Total: 8.34 kcal Atomic # 6 Polarization: 1.54 SS G_CDS: 6.38 Total: 7.91 kcal Atomic # 7 Polarization: -112.68 SS G_CDS: -4.92 Total: -117.60 kcal Atomic # 8 Polarization: -16.85 SS G_CDS: -0.05 Total: -16.90 kcal Atomic # 14 Polarization: 41.72 SS G_CDS: 2.03 Total: 43.75 kcal Total: -78.17 3.67 -74.50 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690390281.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.802 kcal (2) G-P(sol) polarization free energy of solvation -78.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.504 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds