Wall clock time and date at job start Tue Mar 31 2020 19:50:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47475 * 2 1 4 4 C 1.50701 * 109.47146 * 120.00277 * 2 1 3 5 5 N 1.31072 * 126.65934 * 300.17011 * 4 2 1 6 6 N 1.28849 * 107.98814 * 180.24232 * 5 4 2 7 7 N 1.28734 * 109.39549 * 359.75019 * 6 5 4 8 8 N 1.29019 * 108.81147 * 0.02562 * 7 6 5 9 9 C 1.46508 * 126.43878 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47272 * 90.01802 * 9 8 7 11 11 O 1.21287 * 119.99731 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00053 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99875 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47245 * 180.02562 * 13 12 10 15 15 H 1.09007 * 109.58567 * 59.85826 * 14 13 12 16 16 C 1.53191 * 109.59089 * 180.14511 * 14 13 12 17 17 C 1.53043 * 109.31298 * 174.56188 * 16 14 13 18 18 C 1.53037 * 109.53822 * 298.63869 * 17 16 14 19 19 C 1.53189 * 109.31397 * 61.36428 * 18 17 16 20 20 N 1.46921 * 108.89425 * 305.29082 * 19 18 17 21 21 C 1.36934 * 120.62996 * 233.67884 * 20 19 18 22 22 H 1.08008 * 119.99879 * 149.01439 * 21 20 19 23 23 C 1.38808 * 120.00388 * 329.01446 * 21 20 19 24 24 N 1.31616 * 120.00174 * 162.32153 * 23 21 20 25 25 Si 1.86799 * 119.99786 * 342.32267 * 23 21 20 26 26 H 1.48504 * 109.46889 * 90.02834 * 25 23 21 27 27 H 1.48502 * 109.47032 * 210.02614 * 25 23 21 28 28 H 1.48490 * 109.47226 * 330.02812 * 25 23 21 29 29 H 1.09003 * 109.47110 * 300.00320 * 1 2 3 30 30 H 1.09008 * 109.47051 * 59.99477 * 1 2 3 31 31 H 1.08996 * 109.47580 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47314 * 240.00162 * 2 1 3 33 33 H 1.09001 * 109.47352 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47292 * 300.00288 * 3 2 1 35 35 H 1.09006 * 109.46775 * 60.00351 * 3 2 1 36 36 H 1.09001 * 109.46650 * 330.02005 * 9 8 7 37 37 H 1.08996 * 109.47039 * 210.01953 * 9 8 7 38 38 H 0.97000 * 120.00297 * 0.02562 * 12 10 9 39 39 H 1.09001 * 109.47351 * 60.00353 * 13 12 10 40 40 H 1.09005 * 109.47335 * 299.99899 * 13 12 10 41 41 H 1.09004 * 109.49086 * 54.61297 * 16 14 13 42 42 H 1.08992 * 109.49811 * 294.51648 * 16 14 13 43 43 H 1.09003 * 109.45579 * 178.61596 * 17 16 14 44 44 H 1.09000 * 109.44440 * 58.65493 * 17 16 14 45 45 H 1.08997 * 109.50007 * 301.41096 * 18 17 16 46 46 H 1.09008 * 109.49684 * 181.31971 * 18 17 16 47 47 H 1.09001 * 109.58584 * 65.15139 * 19 18 17 48 48 H 1.08999 * 109.58529 * 185.43041 * 19 18 17 49 49 H 0.97001 * 120.00355 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7949 -0.3803 2.4765 6 7 2.4015 -1.2270 3.2350 7 7 3.0152 -2.0918 2.5050 8 7 2.8095 -1.8089 1.2632 9 6 3.3288 -2.5422 0.1060 10 6 2.3499 -3.6183 -0.2873 11 8 1.3197 -3.7586 0.3371 12 7 2.6193 -4.4248 -1.3330 13 6 1.6675 -5.4706 -1.7157 14 6 2.2104 -6.2374 -2.9232 15 1 3.1676 -6.6918 -2.6673 16 6 1.2153 -7.3295 -3.3280 17 6 1.6980 -8.0022 -4.6151 18 6 1.7632 -6.9670 -5.7403 19 6 2.7646 -5.8708 -5.3629 20 7 2.3903 -5.3142 -4.0557 21 6 2.2105 -3.9660 -3.8971 22 1 1.4989 -3.5976 -3.1729 23 6 2.9427 -3.0728 -4.6670 24 7 2.5463 -1.8229 -4.7804 25 14 4.4907 -3.6448 -5.5423 26 1 4.1388 -4.1392 -6.8977 27 1 5.4406 -2.5095 -5.6607 28 1 5.1230 -4.7403 -4.7645 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 4.2851 -2.9974 0.3638 37 1 3.4669 -1.8542 -0.7280 38 1 3.4435 -4.3129 -1.8321 39 1 0.7115 -5.0150 -1.9740 40 1 1.5285 -6.1585 -0.8815 41 1 0.2348 -6.8839 -3.4960 42 1 1.1467 -8.0720 -2.5331 43 1 1.0044 -8.7963 -4.8919 44 1 2.6892 -8.4259 -4.4534 45 1 0.7776 -6.5250 -5.8856 46 1 2.0846 -7.4516 -6.6624 47 1 3.7669 -6.2954 -5.3059 48 1 2.7440 -5.0824 -6.1152 49 1 3.0578 -1.1987 -5.3187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690457685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:41 Heat of formation + Delta-G solvation = 96.439713 kcal Electronic energy + Delta-G solvation = -30954.042480 eV Core-core repulsion = 26954.470621 eV Total energy + Delta-G solvation = -3999.571860 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.98913 -39.65550 -38.19295 -36.02642 -35.23410 -34.50621 -33.23798 -31.49593 -31.12300 -30.88074 -28.98470 -27.13626 -26.23452 -24.79140 -24.23258 -23.04363 -22.82905 -21.11499 -20.66178 -20.22325 -19.52265 -17.78464 -17.55474 -16.67340 -16.10706 -15.88617 -15.55840 -15.32718 -14.99907 -14.78678 -14.37006 -13.87179 -13.86371 -13.53685 -13.41646 -13.24462 -13.18140 -12.73371 -12.67414 -12.31215 -12.19931 -12.12689 -11.89951 -11.80466 -11.59634 -11.46851 -11.27534 -11.13136 -11.09859 -10.98616 -10.81069 -10.74187 -10.59721 -10.35549 -10.10339 -9.90054 -9.76964 -9.66059 -9.52376 -8.91344 -8.58087 -7.13911 -6.18058 -3.59342 1.38830 1.99897 2.45564 2.70736 3.13433 3.28655 3.30708 3.41835 4.03410 4.29695 4.31956 4.59501 4.69526 4.79919 4.87154 5.04385 5.05370 5.14094 5.15648 5.28776 5.35656 5.37019 5.60244 5.61165 5.69024 5.71226 5.79868 5.80283 5.88552 5.90854 5.94691 5.99898 6.03174 6.07723 6.22815 6.25074 6.26198 6.28738 6.34742 6.34945 6.43172 6.55764 6.59334 6.75826 6.86164 7.72517 7.80169 8.11986 8.40450 8.68837 8.81313 9.47101 9.87616 10.95659 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.003899 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.224981 B = 7179.669839 C = 8228.567966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.015 4.015 3 C -0.140 4.140 4 C 0.210 3.790 5 N -0.306 5.306 6 N -0.082 5.082 7 N -0.092 5.092 8 N -0.289 5.289 9 C 0.090 3.910 10 C 0.501 3.499 11 O -0.542 6.542 12 N -0.682 5.682 13 C 0.137 3.863 14 C 0.163 3.837 15 H 0.039 0.961 16 C -0.129 4.129 17 C -0.108 4.108 18 C -0.136 4.136 19 C 0.125 3.875 20 N -0.605 5.605 21 C -0.266 4.266 22 H 0.092 0.908 23 C 0.029 3.971 24 N -0.902 5.902 25 Si 0.879 3.121 26 H -0.287 1.287 27 H -0.304 1.304 28 H -0.271 1.271 29 H 0.065 0.935 30 H 0.073 0.927 31 H 0.061 0.939 32 H 0.101 0.899 33 H 0.055 0.945 34 H 0.075 0.925 35 H 0.067 0.933 36 H 0.137 0.863 37 H 0.145 0.855 38 H 0.414 0.586 39 H 0.073 0.927 40 H 0.061 0.939 41 H 0.066 0.934 42 H 0.057 0.943 43 H 0.052 0.948 44 H 0.054 0.946 45 H 0.063 0.937 46 H 0.051 0.949 47 H 0.024 0.976 48 H 0.072 0.928 49 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.900 -2.783 2.250 4.052 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.037 4.037 3 C -0.199 4.199 4 C -0.068 4.068 5 N -0.155 5.155 6 N -0.075 5.075 7 N -0.078 5.078 8 N -0.089 5.089 9 C -0.036 4.036 10 C 0.283 3.717 11 O -0.420 6.420 12 N -0.333 5.333 13 C 0.013 3.987 14 C 0.057 3.943 15 H 0.057 0.943 16 C -0.168 4.168 17 C -0.146 4.146 18 C -0.175 4.175 19 C 0.000 4.000 20 N -0.330 5.330 21 C -0.394 4.394 22 H 0.109 0.891 23 C -0.171 4.171 24 N -0.544 5.544 25 Si 0.709 3.291 26 H -0.215 1.215 27 H -0.232 1.232 28 H -0.196 1.196 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.080 0.920 32 H 0.119 0.881 33 H 0.074 0.926 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.155 0.845 37 H 0.162 0.838 38 H 0.251 0.749 39 H 0.091 0.909 40 H 0.079 0.921 41 H 0.084 0.916 42 H 0.075 0.925 43 H 0.070 0.930 44 H 0.073 0.927 45 H 0.082 0.918 46 H 0.070 0.930 47 H 0.042 0.958 48 H 0.090 0.910 49 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.330 -2.886 4.074 5.167 hybrid contribution 1.355 -0.385 -2.086 2.517 sum 2.685 -3.272 1.988 4.676 Atomic orbital electron populations 1.21771 0.91868 1.03160 1.02944 1.19850 0.97873 0.96002 0.89942 1.21815 1.01067 0.93612 1.03359 1.26125 0.94162 0.88646 0.97875 1.74911 1.20117 1.22061 0.98457 1.78524 1.07121 0.99225 1.22670 1.78804 1.20598 1.20913 0.87467 1.47847 1.34351 1.19935 1.06769 1.22060 0.99031 0.96303 0.86175 1.20038 0.87227 0.82891 0.81527 1.90763 1.26454 1.71020 1.53762 1.45780 1.24662 1.33098 1.29743 1.21339 0.93263 0.88659 0.95446 1.20805 0.95950 0.90306 0.87284 0.94348 1.21927 1.00071 0.97729 0.97093 1.21368 1.00401 0.97329 0.95516 1.22006 1.01344 0.97265 0.96931 1.21374 0.94815 0.95317 0.88473 1.44469 1.82250 1.03367 1.02939 1.18966 1.18238 0.79140 1.23042 0.89057 1.25324 0.98122 0.94981 0.98637 1.69803 1.39181 1.04156 1.41253 0.87036 0.84934 0.77114 0.79971 1.21492 1.23227 1.19625 0.91603 0.90781 0.91969 0.88073 0.92571 0.90654 0.91392 0.84497 0.83766 0.74862 0.90863 0.92058 0.91561 0.92460 0.92968 0.92710 0.91782 0.92997 0.95786 0.90983 0.92606 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.86 9.17 37.15 0.34 -1.52 16 2 C -0.01 -0.20 3.26 -91.77 -0.30 -0.50 16 3 C -0.14 -1.58 9.18 37.16 0.34 -1.24 16 4 C 0.21 3.34 6.64 -155.43 -1.03 2.31 16 5 N -0.31 -5.43 12.36 32.70 0.40 -5.03 16 6 N -0.08 -1.53 13.43 60.35 0.81 -0.72 16 7 N -0.09 -1.64 13.29 60.35 0.80 -0.84 16 8 N -0.29 -4.58 2.83 -59.44 -0.17 -4.75 16 9 C 0.09 1.18 6.57 -5.19 -0.03 1.15 16 10 C 0.50 8.13 7.90 -10.99 -0.09 8.04 16 11 O -0.54 -10.88 16.43 5.55 0.09 -10.79 16 12 N -0.68 -10.70 3.87 -60.29 -0.23 -10.93 16 13 C 0.14 2.19 4.43 -4.04 -0.02 2.18 16 14 C 0.16 2.59 3.00 -67.44 -0.20 2.39 16 15 H 0.04 0.60 8.14 -51.93 -0.42 0.17 16 16 C -0.13 -1.80 5.37 -26.61 -0.14 -1.94 16 17 C -0.11 -1.46 5.88 -26.69 -0.16 -1.62 16 18 C -0.14 -2.11 6.08 -26.61 -0.16 -2.27 16 19 C 0.13 2.34 4.19 -3.71 -0.02 2.32 16 20 N -0.60 -11.63 2.73 -164.56 -0.45 -12.08 16 21 C -0.27 -5.91 7.48 -15.06 -0.11 -6.02 16 22 H 0.09 2.23 6.08 -52.48 -0.32 1.91 16 23 C 0.03 0.70 5.26 -17.43 -0.09 0.61 16 24 N -0.90 -23.21 13.97 55.49 0.78 -22.43 16 25 Si 0.88 19.03 24.34 -169.99 -4.14 14.90 16 26 H -0.29 -6.30 6.56 56.52 0.37 -5.93 16 27 H -0.30 -6.85 7.11 56.52 0.40 -6.45 16 28 H -0.27 -5.67 6.72 56.52 0.38 -5.29 16 29 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.88 8.14 -51.92 -0.42 0.45 16 31 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 32 H 0.10 1.40 6.84 -51.93 -0.36 1.04 16 33 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.14 1.35 8.14 -51.93 -0.42 0.93 16 37 H 0.14 1.65 7.12 -51.93 -0.37 1.28 16 38 H 0.41 6.33 7.42 -40.82 -0.30 6.03 16 39 H 0.07 1.35 7.42 -51.93 -0.39 0.97 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 45 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 46 H 0.05 0.71 8.14 -51.92 -0.42 0.29 16 47 H 0.02 0.45 7.04 -51.93 -0.37 0.08 16 48 H 0.07 1.51 4.69 -51.93 -0.24 1.26 16 49 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 LS Contribution 385.12 15.07 5.80 5.80 Total: -1.00 -29.88 385.12 -5.84 -35.72 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: -7.87 Total: 7.27 kcal Atomic # 6 Polarization: 5.56 SS G_CDS: -1.67 Total: 3.89 kcal Atomic # 7 Polarization: -58.72 SS G_CDS: 1.94 Total: -56.78 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.09 Total: -10.79 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -4.14 Total: 14.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -29.88 -5.84 -35.72 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690457685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.160 kcal (2) G-P(sol) polarization free energy of solvation -29.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.284 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.720 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds