Wall clock time and date at job start Tue Mar 31 2020 19:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53001 * 109.47475 * 2 1 4 4 C 1.50701 * 109.47146 * 120.00277 * 2 1 3 5 5 N 1.31072 * 126.65934 * 300.17011 * 4 2 1 6 6 N 1.28849 * 107.98814 * 180.24232 * 5 4 2 7 7 N 1.28734 * 109.39549 * 359.75019 * 6 5 4 8 8 N 1.29019 * 108.81147 * 0.02562 * 7 6 5 9 9 C 1.46508 * 126.43878 * 179.97438 * 8 7 6 10 10 C 1.50699 * 109.47272 * 90.01802 * 9 8 7 11 11 O 1.21287 * 119.99731 * 0.02562 * 10 9 8 12 12 N 1.34771 * 120.00053 * 180.02562 * 10 9 8 13 13 C 1.46499 * 119.99875 * 180.02562 * 12 10 9 14 14 C 1.53003 * 109.47245 * 180.02562 * 13 12 10 15 15 H 1.09007 * 109.58567 * 59.85826 * 14 13 12 16 16 C 1.53191 * 109.59089 * 180.14511 * 14 13 12 17 17 C 1.53043 * 109.31298 * 174.56188 * 16 14 13 18 18 C 1.53037 * 109.53822 * 298.63869 * 17 16 14 19 19 C 1.53189 * 109.31397 * 61.36428 * 18 17 16 20 20 N 1.46921 * 108.89425 * 305.29082 * 19 18 17 21 21 C 1.36934 * 120.62996 * 233.67884 * 20 19 18 22 22 H 1.08008 * 119.99879 * 149.01439 * 21 20 19 23 23 C 1.38808 * 120.00388 * 329.01446 * 21 20 19 24 24 N 1.31616 * 120.00174 * 162.32153 * 23 21 20 25 25 Si 1.86799 * 119.99786 * 342.32267 * 23 21 20 26 26 H 1.48504 * 109.46889 * 90.02834 * 25 23 21 27 27 H 1.48502 * 109.47032 * 210.02614 * 25 23 21 28 28 H 1.48490 * 109.47226 * 330.02812 * 25 23 21 29 29 H 1.09003 * 109.47110 * 300.00320 * 1 2 3 30 30 H 1.09008 * 109.47051 * 59.99477 * 1 2 3 31 31 H 1.08996 * 109.47580 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47314 * 240.00162 * 2 1 3 33 33 H 1.09001 * 109.47352 * 179.97438 * 3 2 1 34 34 H 1.08994 * 109.47292 * 300.00288 * 3 2 1 35 35 H 1.09006 * 109.46775 * 60.00351 * 3 2 1 36 36 H 1.09001 * 109.46650 * 330.02005 * 9 8 7 37 37 H 1.08996 * 109.47039 * 210.01953 * 9 8 7 38 38 H 0.97000 * 120.00297 * 0.02562 * 12 10 9 39 39 H 1.09001 * 109.47351 * 60.00353 * 13 12 10 40 40 H 1.09005 * 109.47335 * 299.99899 * 13 12 10 41 41 H 1.09004 * 109.49086 * 54.61297 * 16 14 13 42 42 H 1.08992 * 109.49811 * 294.51648 * 16 14 13 43 43 H 1.09003 * 109.45579 * 178.61596 * 17 16 14 44 44 H 1.09000 * 109.44440 * 58.65493 * 17 16 14 45 45 H 1.08997 * 109.50007 * 301.41096 * 18 17 16 46 46 H 1.09008 * 109.49684 * 181.31971 * 18 17 16 47 47 H 1.09001 * 109.58584 * 65.15139 * 19 18 17 48 48 H 1.08999 * 109.58529 * 185.43041 * 19 18 17 49 49 H 0.97001 * 120.00355 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2304 5 7 1.7949 -0.3803 2.4765 6 7 2.4015 -1.2270 3.2350 7 7 3.0152 -2.0918 2.5050 8 7 2.8095 -1.8089 1.2632 9 6 3.3288 -2.5422 0.1060 10 6 2.3499 -3.6183 -0.2873 11 8 1.3197 -3.7586 0.3371 12 7 2.6193 -4.4248 -1.3330 13 6 1.6675 -5.4706 -1.7157 14 6 2.2104 -6.2374 -2.9232 15 1 3.1676 -6.6918 -2.6673 16 6 1.2153 -7.3295 -3.3280 17 6 1.6980 -8.0022 -4.6151 18 6 1.7632 -6.9670 -5.7403 19 6 2.7646 -5.8708 -5.3629 20 7 2.3903 -5.3142 -4.0557 21 6 2.2105 -3.9660 -3.8971 22 1 1.4989 -3.5976 -3.1729 23 6 2.9427 -3.0728 -4.6670 24 7 2.5463 -1.8229 -4.7804 25 14 4.4907 -3.6448 -5.5423 26 1 4.1388 -4.1392 -6.8977 27 1 5.4406 -2.5095 -5.6607 28 1 5.1230 -4.7403 -4.7645 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5140 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 4.2851 -2.9974 0.3638 37 1 3.4669 -1.8542 -0.7280 38 1 3.4435 -4.3129 -1.8321 39 1 0.7115 -5.0150 -1.9740 40 1 1.5285 -6.1585 -0.8815 41 1 0.2348 -6.8839 -3.4960 42 1 1.1467 -8.0720 -2.5331 43 1 1.0044 -8.7963 -4.8919 44 1 2.6892 -8.4259 -4.4534 45 1 0.7776 -6.5250 -5.8856 46 1 2.0846 -7.4516 -6.6624 47 1 3.7669 -6.2954 -5.3059 48 1 2.7440 -5.0824 -6.1152 49 1 3.0578 -1.1987 -5.3187 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690457685.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:40 Heat of formation + Delta-G solvation = 76.817710 kcal Electronic energy + Delta-G solvation = -30954.893354 eV Core-core repulsion = 26954.470621 eV Total energy + Delta-G solvation = -4000.422734 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -45.29841 -41.01115 -39.55848 -37.17427 -36.49478 -35.85889 -34.84002 -32.80869 -32.52278 -32.33951 -30.21349 -28.14540 -27.64480 -26.26577 -25.47575 -24.36158 -24.25476 -22.39419 -21.93637 -21.48153 -20.85245 -19.15510 -18.78711 -18.23357 -17.52451 -17.23504 -16.85596 -16.74971 -16.30701 -16.08684 -15.52637 -15.26935 -15.18013 -14.86459 -14.77980 -14.52165 -14.25260 -14.22549 -13.94478 -13.70624 -13.58206 -13.21672 -13.19528 -13.11013 -12.90786 -12.71149 -12.50313 -12.46929 -12.34038 -12.30310 -12.27774 -11.94338 -11.90512 -11.67065 -11.53521 -11.32162 -11.18281 -11.12650 -10.87301 -10.58887 -10.00243 -8.75804 -8.01752 -5.38472 0.09324 0.81050 1.11248 1.39346 1.43177 1.51943 1.58367 2.17345 2.52412 2.86224 3.09688 3.15134 3.35855 3.55838 3.60761 3.87347 3.90524 4.00341 4.03734 4.09076 4.19117 4.20450 4.33143 4.38485 4.43289 4.52531 4.61529 4.64130 4.71512 4.75365 4.79770 4.86097 4.89233 4.94363 4.95081 5.06737 5.11247 5.17635 5.22845 5.24844 5.29757 5.30416 5.32120 5.46947 5.63293 6.00564 6.31165 6.48603 6.99440 7.11268 7.47244 7.72601 8.15975 9.14942 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013809 B = 0.003899 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2027.224981 B = 7179.669839 C = 8228.567966 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.014 4.014 3 C -0.134 4.134 4 C 0.211 3.789 5 N -0.322 5.322 6 N -0.103 5.103 7 N -0.100 5.100 8 N -0.288 5.288 9 C 0.089 3.911 10 C 0.501 3.499 11 O -0.584 6.584 12 N -0.677 5.677 13 C 0.141 3.859 14 C 0.163 3.837 15 H 0.058 0.942 16 C -0.126 4.126 17 C -0.104 4.104 18 C -0.132 4.132 19 C 0.120 3.880 20 N -0.616 5.616 21 C -0.234 4.234 22 H 0.065 0.935 23 C -0.014 4.014 24 N -0.944 5.944 25 Si 0.929 3.071 26 H -0.295 1.295 27 H -0.319 1.319 28 H -0.254 1.254 29 H 0.069 0.931 30 H 0.090 0.910 31 H 0.034 0.966 32 H 0.098 0.902 33 H 0.061 0.939 34 H 0.090 0.910 35 H 0.067 0.933 36 H 0.175 0.825 37 H 0.164 0.836 38 H 0.418 0.582 39 H 0.042 0.958 40 H 0.077 0.923 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.074 0.926 44 H 0.068 0.932 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.034 0.966 48 H 0.044 0.956 49 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 -4.620 1.745 5.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.036 4.036 3 C -0.193 4.193 4 C -0.067 4.067 5 N -0.171 5.171 6 N -0.097 5.097 7 N -0.086 5.086 8 N -0.088 5.088 9 C -0.035 4.035 10 C 0.285 3.715 11 O -0.466 6.466 12 N -0.327 5.327 13 C 0.017 3.983 14 C 0.058 3.942 15 H 0.076 0.924 16 C -0.165 4.165 17 C -0.141 4.141 18 C -0.171 4.171 19 C -0.005 4.005 20 N -0.342 5.342 21 C -0.363 4.363 22 H 0.083 0.917 23 C -0.210 4.210 24 N -0.590 5.590 25 Si 0.760 3.240 26 H -0.223 1.223 27 H -0.248 1.248 28 H -0.178 1.178 29 H 0.088 0.912 30 H 0.109 0.891 31 H 0.054 0.946 32 H 0.116 0.884 33 H 0.080 0.920 34 H 0.109 0.891 35 H 0.086 0.914 36 H 0.193 0.807 37 H 0.181 0.819 38 H 0.256 0.744 39 H 0.060 0.940 40 H 0.095 0.905 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.093 0.907 44 H 0.086 0.914 45 H 0.066 0.934 46 H 0.091 0.909 47 H 0.052 0.948 48 H 0.063 0.937 49 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 2.602 -4.786 3.561 6.508 hybrid contribution 0.869 0.108 -1.956 2.143 sum 3.471 -4.678 1.605 6.042 Atomic orbital electron populations 1.21743 0.91938 1.01660 1.03981 1.19993 0.97752 0.97229 0.88636 1.21799 1.01437 0.91871 1.04144 1.26550 0.93492 0.88560 0.98062 1.74850 1.20603 1.22456 0.99188 1.78488 1.07931 0.99849 1.23425 1.78724 1.20796 1.20878 0.88205 1.48011 1.34108 1.19906 1.06789 1.22353 0.99334 0.95811 0.86022 1.20474 0.87029 0.83044 0.80946 1.90748 1.28388 1.72256 1.55163 1.45744 1.24541 1.32935 1.29478 1.21290 0.92012 0.88791 0.96249 1.20996 0.97346 0.90077 0.85800 0.92416 1.21908 0.98469 0.97565 0.98562 1.21363 1.01785 0.97008 0.93958 1.21943 0.99402 0.96901 0.98896 1.21408 0.96279 0.95509 0.87327 1.44597 1.82308 1.02739 1.04523 1.18771 1.16042 0.80635 1.20883 0.91722 1.25703 1.00300 0.94973 1.00068 1.69916 1.40415 1.05346 1.43296 0.86232 0.82288 0.76491 0.79020 1.22253 1.24800 1.17765 0.91212 0.89094 0.94639 0.88430 0.91965 0.89085 0.91353 0.80733 0.81857 0.74428 0.93964 0.90538 0.93187 0.89673 0.90698 0.91364 0.93400 0.90932 0.94824 0.93728 0.93229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.63 9.17 71.98 0.66 -2.97 16 2 C -0.01 -0.38 3.26 -11.54 -0.04 -0.42 16 3 C -0.13 -2.85 9.18 71.98 0.66 -2.19 16 4 C 0.21 6.68 6.64 138.13 0.92 7.60 16 5 N -0.32 -11.43 12.36 -50.45 -0.62 -12.06 16 6 N -0.10 -3.88 13.43 37.01 0.50 -3.39 16 7 N -0.10 -3.51 13.29 37.02 0.49 -3.02 16 8 N -0.29 -8.95 2.83 -341.97 -0.97 -9.92 16 9 C 0.09 2.21 6.57 85.63 0.56 2.78 16 10 C 0.50 16.02 7.90 87.66 0.69 16.71 16 11 O -0.58 -23.74 16.43 -3.05 -0.05 -23.79 16 12 N -0.68 -20.58 3.87 -463.05 -1.79 -22.37 16 13 C 0.14 4.38 4.43 86.38 0.38 4.76 16 14 C 0.16 4.80 3.00 44.92 0.13 4.94 16 15 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 16 C -0.13 -3.14 5.37 30.67 0.16 -2.97 16 17 C -0.10 -2.38 5.88 30.62 0.18 -2.20 16 18 C -0.13 -3.76 6.08 30.67 0.19 -3.57 16 19 C 0.12 4.22 4.19 86.36 0.36 4.58 16 20 N -0.62 -22.77 2.73 -674.56 -1.84 -24.61 16 21 C -0.23 -10.36 7.48 84.03 0.63 -9.74 16 22 H 0.07 3.22 6.08 -2.91 -0.02 3.20 16 23 C -0.01 -0.68 5.26 84.86 0.45 -0.23 16 24 N -0.94 -49.44 13.97 21.65 0.30 -49.14 16 25 Si 0.93 38.91 24.34 68.60 1.67 40.58 16 26 H -0.29 -12.57 6.56 99.48 0.65 -11.91 16 27 H -0.32 -14.02 7.11 99.48 0.71 -13.31 16 28 H -0.25 -9.74 6.72 99.48 0.67 -9.07 16 29 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 2.11 8.14 -2.38 -0.02 2.09 16 31 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.10 2.67 6.84 -2.38 -0.02 2.66 16 33 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 35 H 0.07 1.45 8.14 -2.38 -0.02 1.43 16 36 H 0.18 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.16 3.48 7.12 -2.39 -0.02 3.47 16 38 H 0.42 12.09 7.42 -92.71 -0.69 11.40 16 39 H 0.04 1.59 7.42 -2.39 -0.02 1.57 16 40 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 41 H 0.05 1.42 8.14 -2.38 -0.02 1.40 16 42 H 0.08 1.69 8.14 -2.39 -0.02 1.68 16 43 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 44 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 45 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 46 H 0.07 1.76 8.14 -2.38 -0.02 1.74 16 47 H 0.03 1.14 7.04 -2.39 -0.02 1.12 16 48 H 0.04 1.82 4.69 -2.39 -0.01 1.81 16 49 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 Total: -1.00 -66.01 385.12 3.81 -62.21 By element: Atomic # 1 Polarization: 28.25 SS G_CDS: 0.18 Total: 28.43 kcal Atomic # 6 Polarization: 11.14 SS G_CDS: 5.94 Total: 17.08 kcal Atomic # 7 Polarization: -120.57 SS G_CDS: -3.93 Total: -124.51 kcal Atomic # 8 Polarization: -23.74 SS G_CDS: -0.05 Total: -23.79 kcal Atomic # 14 Polarization: 38.91 SS G_CDS: 1.67 Total: 40.58 kcal Total: -66.01 3.81 -62.21 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690457685.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.023 kcal (2) G-P(sol) polarization free energy of solvation -66.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds