Wall clock time and date at job start Tue Mar 31 2020 19:50:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47185 * 2 1 4 4 C 1.50704 * 109.46940 * 120.00080 * 2 1 3 5 5 N 1.31068 * 126.65658 * 300.02630 * 4 2 1 6 6 N 1.28843 * 107.99034 * 179.97438 * 5 4 2 7 7 N 1.28737 * 109.39318 * 359.97438 * 6 5 4 8 8 N 1.29015 * 108.81410 * 359.74820 * 7 6 5 9 9 C 1.46496 * 126.44627 * 180.24680 * 8 7 6 10 10 C 1.50707 * 109.47259 * 270.18095 * 9 8 7 11 11 O 1.21282 * 119.99486 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00224 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00081 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47393 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.58641 * 299.93392 * 14 13 12 16 16 C 1.53194 * 109.58814 * 179.50145 * 14 13 12 17 17 C 1.53044 * 109.31074 * 185.57713 * 16 14 13 18 18 C 1.53041 * 109.53487 * 61.37239 * 17 16 14 19 19 C 1.53194 * 109.31122 * 298.62675 * 18 17 16 20 20 N 1.46923 * 108.77157 * 54.64102 * 19 18 17 21 21 C 1.36940 * 120.63243 * 126.41219 * 20 19 18 22 22 H 1.08001 * 120.00092 * 210.91308 * 21 20 19 23 23 C 1.38810 * 119.99908 * 30.91203 * 21 20 19 24 24 N 1.31624 * 120.00224 * 14.41646 * 23 21 20 25 25 Si 1.86799 * 119.99957 * 194.42286 * 23 21 20 26 26 H 1.48493 * 109.47603 * 59.99555 * 25 23 21 27 27 H 1.48507 * 109.46962 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46960 * 299.99498 * 25 23 21 29 29 H 1.08998 * 109.47659 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47234 * 300.00191 * 1 2 3 31 31 H 1.09007 * 109.46818 * 59.99658 * 1 2 3 32 32 H 1.08997 * 109.47234 * 239.99808 * 2 1 3 33 33 H 1.09002 * 109.47040 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47449 * 300.00039 * 3 2 1 35 35 H 1.09006 * 109.47726 * 59.99999 * 3 2 1 36 36 H 1.09001 * 109.46934 * 30.17370 * 9 8 7 37 37 H 1.08998 * 109.47707 * 150.17752 * 9 8 7 38 38 H 0.97005 * 119.99778 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.47215 * 300.00323 * 13 12 10 40 40 H 1.09005 * 109.47372 * 59.99843 * 13 12 10 41 41 H 1.08993 * 109.50045 * 305.53331 * 16 14 13 42 42 H 1.09000 * 109.49216 * 65.63050 * 16 14 13 43 43 H 1.08993 * 109.46221 * 301.34785 * 17 16 14 44 44 H 1.08998 * 109.44834 * 181.38010 * 17 16 14 45 45 H 1.09006 * 109.49406 * 178.68168 * 18 17 16 46 46 H 1.08995 * 109.49955 * 58.58052 * 18 17 16 47 47 H 1.08993 * 109.58839 * 294.85098 * 19 18 17 48 48 H 1.09003 * 109.70270 * 174.49160 * 19 18 17 49 49 H 0.96993 * 120.00334 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7971 -0.3786 2.4765 6 7 2.3980 -1.2292 3.2350 7 7 3.0100 -2.0953 2.5052 8 7 2.8040 -1.8128 1.2633 9 6 3.3168 -2.5506 0.1063 10 6 4.6565 -1.9885 -0.2945 11 8 5.1354 -1.0624 0.3252 12 7 5.3223 -2.5149 -1.3414 13 6 6.6243 -1.9681 -1.7312 14 6 7.1600 -2.7387 -2.9395 15 1 7.2731 -3.7914 -2.6807 16 6 8.5159 -2.1608 -3.3572 17 6 8.9805 -2.8414 -4.6468 18 6 7.9722 -2.5634 -5.7641 19 6 6.6102 -3.1458 -5.3738 20 7 6.2229 -2.6057 -4.0634 21 6 5.0115 -1.9905 -3.8927 22 1 4.9065 -1.1963 -3.1683 23 6 3.9184 -2.3877 -4.6505 24 7 3.9573 -3.5215 -5.3179 25 14 2.3923 -1.3130 -4.7233 26 1 2.7495 0.0172 -5.2785 27 1 1.3750 -1.9561 -5.5933 28 1 1.8388 -1.1460 -3.3555 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.4278 -3.6032 0.3667 37 1 2.6187 -2.4536 -0.7252 38 1 4.9394 -3.2558 -1.8367 39 1 6.5130 -0.9156 -1.9921 40 1 7.3225 -2.0643 -0.8997 41 1 8.4178 -1.0886 -3.5266 42 1 9.2461 -2.3397 -2.5680 43 1 9.0546 -3.9165 -4.4837 44 1 9.9565 -2.4494 -4.9327 45 1 8.3156 -3.0288 -6.6880 46 1 7.8793 -1.4874 -5.9108 47 1 6.6804 -4.2319 -5.3151 48 1 5.8644 -2.8675 -6.1185 49 1 3.1935 -3.7992 -5.8472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001690457686.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:46 Heat of formation + Delta-G solvation = 91.218165 kcal Electronic energy + Delta-G solvation = -31011.299838 eV Core-core repulsion = 27011.501555 eV Total energy + Delta-G solvation = -3999.798283 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.17 seconds Orbital eigenvalues (eV) -44.06878 -39.65097 -37.94634 -36.16180 -35.28979 -34.43552 -33.24910 -31.49802 -31.07058 -30.09739 -28.98727 -27.29315 -26.09935 -24.89912 -24.33684 -23.12234 -22.30155 -21.07441 -20.71187 -20.22480 -19.26859 -17.83881 -17.62566 -16.60227 -16.07456 -15.94991 -15.61722 -15.14934 -14.97518 -14.58523 -14.21814 -14.09018 -13.61359 -13.46789 -13.33565 -13.32772 -13.01045 -12.77069 -12.54240 -12.29014 -12.22681 -12.11736 -11.85252 -11.71684 -11.42629 -11.37191 -11.28178 -11.19488 -11.10908 -10.95701 -10.84217 -10.72620 -10.45476 -10.31035 -10.14584 -9.96106 -9.77990 -9.62202 -9.46734 -8.82445 -8.53213 -6.85154 -6.03218 -3.50291 1.31134 1.92502 2.37812 2.65900 3.08086 3.23540 3.25760 3.39515 3.91072 4.21829 4.22548 4.56412 4.74691 4.82438 4.89705 5.00537 5.06430 5.13490 5.21149 5.33718 5.50635 5.51496 5.54567 5.55577 5.65860 5.74776 5.79955 5.81491 5.83701 5.87447 5.98826 6.08114 6.10941 6.16970 6.21637 6.24807 6.25922 6.46800 6.57275 6.60997 6.69294 6.77981 6.87770 7.23659 7.49894 7.57577 7.80277 8.21116 8.39278 8.73890 8.96131 9.58401 10.17691 11.03069 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.004155 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.329468 B = 6736.460169 C = 8083.005209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.017 4.017 3 C -0.142 4.142 4 C 0.207 3.793 5 N -0.305 5.305 6 N -0.081 5.081 7 N -0.089 5.089 8 N -0.288 5.288 9 C 0.089 3.911 10 C 0.496 3.504 11 O -0.544 6.544 12 N -0.680 5.680 13 C 0.136 3.864 14 C 0.161 3.839 15 H 0.034 0.966 16 C -0.127 4.127 17 C -0.107 4.107 18 C -0.145 4.145 19 C 0.173 3.827 20 N -0.589 5.589 21 C -0.256 4.256 22 H 0.068 0.932 23 C 0.008 3.992 24 N -0.895 5.895 25 Si 0.892 3.108 26 H -0.282 1.282 27 H -0.289 1.289 28 H -0.282 1.282 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.073 0.927 32 H 0.095 0.905 33 H 0.063 0.937 34 H 0.071 0.929 35 H 0.068 0.932 36 H 0.140 0.860 37 H 0.141 0.859 38 H 0.419 0.581 39 H 0.069 0.931 40 H 0.059 0.941 41 H 0.061 0.939 42 H 0.052 0.948 43 H 0.053 0.947 44 H 0.045 0.955 45 H 0.047 0.953 46 H 0.053 0.947 47 H 0.019 0.981 48 H 0.084 0.916 49 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.726 1.062 2.938 3.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.038 4.038 3 C -0.200 4.200 4 C -0.071 4.071 5 N -0.154 5.154 6 N -0.074 5.074 7 N -0.074 5.074 8 N -0.088 5.088 9 C -0.037 4.037 10 C 0.278 3.722 11 O -0.422 6.422 12 N -0.331 5.331 13 C 0.012 3.988 14 C 0.054 3.946 15 H 0.052 0.948 16 C -0.167 4.167 17 C -0.145 4.145 18 C -0.184 4.184 19 C 0.048 3.952 20 N -0.313 5.313 21 C -0.386 4.386 22 H 0.086 0.914 23 C -0.192 4.192 24 N -0.539 5.539 25 Si 0.721 3.279 26 H -0.208 1.208 27 H -0.215 1.215 28 H -0.208 1.208 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.090 0.910 35 H 0.087 0.913 36 H 0.158 0.842 37 H 0.158 0.842 38 H 0.257 0.743 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.080 0.920 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.072 0.928 47 H 0.037 0.963 48 H 0.102 0.898 49 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -0.396 1.437 4.693 4.924 hybrid contribution -0.836 0.038 -1.549 1.760 sum -1.231 1.475 3.144 3.685 Atomic orbital electron populations 1.21835 0.92119 1.02641 1.03445 1.19849 0.97252 0.96774 0.89971 1.21800 1.02089 0.93010 1.03081 1.26024 0.94819 0.88489 0.97809 1.74906 1.21010 1.21089 0.98361 1.78539 1.07055 0.99229 1.22598 1.78826 1.19085 1.22110 0.87387 1.47864 1.33539 1.20584 1.06849 1.22079 0.97234 0.98353 0.85998 1.20074 0.86088 0.84329 0.81722 1.90760 1.68478 1.28937 1.54025 1.45894 1.20904 1.36877 1.29461 1.21373 0.82719 0.98884 0.95818 1.20740 0.90075 0.96086 0.87738 0.94840 1.21935 0.97154 1.00558 0.97063 1.21360 0.97633 0.99783 0.95741 1.22193 0.98616 1.01019 0.96549 1.20760 0.91805 0.94601 0.88026 1.44070 1.15379 1.68257 1.03577 1.19143 0.85502 1.11963 1.21994 0.91402 1.25099 0.97341 0.95766 1.00956 1.69987 1.30704 1.19692 1.33496 0.86571 0.82908 0.80611 0.77763 1.20847 1.21514 1.20839 0.92411 0.91059 0.90855 0.88655 0.91774 0.90969 0.91254 0.84199 0.84177 0.74272 0.91245 0.92291 0.92046 0.92967 0.92819 0.93630 0.93463 0.92815 0.96283 0.89765 0.93347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.18 37.16 0.34 -1.16 16 2 C -0.02 -0.21 3.26 -91.77 -0.30 -0.51 16 3 C -0.14 -1.75 9.17 37.15 0.34 -1.41 16 4 C 0.21 3.19 6.64 -155.43 -1.03 2.16 16 5 N -0.30 -5.25 12.36 32.70 0.40 -4.85 16 6 N -0.08 -1.48 13.43 60.35 0.81 -0.67 16 7 N -0.09 -1.55 13.29 60.35 0.80 -0.75 16 8 N -0.29 -4.48 2.83 -59.44 -0.17 -4.65 16 9 C 0.09 1.15 6.56 -5.19 -0.03 1.12 16 10 C 0.50 7.95 7.90 -10.98 -0.09 7.86 16 11 O -0.54 -10.73 16.43 5.56 0.09 -10.64 16 12 N -0.68 -10.80 3.84 -60.29 -0.23 -11.03 16 13 C 0.14 2.24 4.43 -4.05 -0.02 2.23 16 14 C 0.16 2.74 3.01 -67.60 -0.20 2.54 16 15 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 16 C -0.13 -1.94 5.37 -26.61 -0.14 -2.08 16 17 C -0.11 -1.61 5.88 -26.69 -0.16 -1.77 16 18 C -0.14 -2.46 6.08 -26.61 -0.16 -2.62 16 19 C 0.17 3.56 5.27 -3.71 -0.02 3.55 16 20 N -0.59 -11.98 2.97 -164.77 -0.49 -12.46 16 21 C -0.26 -5.60 6.97 -15.06 -0.11 -5.70 16 22 H 0.07 1.50 5.85 -52.49 -0.31 1.20 16 23 C 0.01 0.19 4.96 -17.43 -0.09 0.10 16 24 N -0.90 -21.88 11.24 55.49 0.62 -21.26 16 25 Si 0.89 18.28 29.58 -169.99 -5.03 13.25 16 26 H -0.28 -6.04 7.11 56.52 0.40 -5.64 16 27 H -0.29 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -5.28 7.11 56.52 0.40 -4.88 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.10 1.23 6.85 -51.93 -0.36 0.87 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.14 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.14 1.53 7.13 -51.93 -0.37 1.16 16 38 H 0.42 6.70 7.39 -40.82 -0.30 6.40 16 39 H 0.07 1.27 7.42 -51.93 -0.39 0.89 16 40 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 47 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 48 H 0.08 1.98 6.19 -51.93 -0.32 1.66 16 49 H 0.26 6.23 8.31 -40.82 -0.34 5.89 16 LS Contribution 391.41 15.07 5.90 5.90 Total: -1.00 -28.40 391.41 -6.89 -35.29 By element: Atomic # 1 Polarization: 15.53 SS G_CDS: -7.94 Total: 7.58 kcal Atomic # 6 Polarization: 5.95 SS G_CDS: -1.66 Total: 4.28 kcal Atomic # 7 Polarization: -57.42 SS G_CDS: 1.75 Total: -55.67 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: 0.09 Total: -10.64 kcal Atomic # 14 Polarization: 18.28 SS G_CDS: -5.03 Total: 13.25 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -28.40 -6.89 -35.29 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690457686.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.509 kcal (2) G-P(sol) polarization free energy of solvation -28.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 98.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds