Wall clock time and date at job start Tue Mar 31 2020 19:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52992 * 109.47185 * 2 1 4 4 C 1.50704 * 109.46940 * 120.00080 * 2 1 3 5 5 N 1.31068 * 126.65658 * 300.02630 * 4 2 1 6 6 N 1.28843 * 107.99034 * 179.97438 * 5 4 2 7 7 N 1.28737 * 109.39318 * 359.97438 * 6 5 4 8 8 N 1.29015 * 108.81410 * 359.74820 * 7 6 5 9 9 C 1.46496 * 126.44627 * 180.24680 * 8 7 6 10 10 C 1.50707 * 109.47259 * 270.18095 * 9 8 7 11 11 O 1.21282 * 119.99486 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00224 * 179.97438 * 10 9 8 13 13 C 1.46494 * 120.00081 * 179.97438 * 12 10 9 14 14 C 1.52997 * 109.47393 * 180.02562 * 13 12 10 15 15 H 1.09001 * 109.58641 * 299.93392 * 14 13 12 16 16 C 1.53194 * 109.58814 * 179.50145 * 14 13 12 17 17 C 1.53044 * 109.31074 * 185.57713 * 16 14 13 18 18 C 1.53041 * 109.53487 * 61.37239 * 17 16 14 19 19 C 1.53194 * 109.31122 * 298.62675 * 18 17 16 20 20 N 1.46923 * 108.77157 * 54.64102 * 19 18 17 21 21 C 1.36940 * 120.63243 * 126.41219 * 20 19 18 22 22 H 1.08001 * 120.00092 * 210.91308 * 21 20 19 23 23 C 1.38810 * 119.99908 * 30.91203 * 21 20 19 24 24 N 1.31624 * 120.00224 * 14.41646 * 23 21 20 25 25 Si 1.86799 * 119.99957 * 194.42286 * 23 21 20 26 26 H 1.48493 * 109.47603 * 59.99555 * 25 23 21 27 27 H 1.48507 * 109.46962 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46960 * 299.99498 * 25 23 21 29 29 H 1.08998 * 109.47659 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47234 * 300.00191 * 1 2 3 31 31 H 1.09007 * 109.46818 * 59.99658 * 1 2 3 32 32 H 1.08997 * 109.47234 * 239.99808 * 2 1 3 33 33 H 1.09002 * 109.47040 * 179.97438 * 3 2 1 34 34 H 1.08997 * 109.47449 * 300.00039 * 3 2 1 35 35 H 1.09006 * 109.47726 * 59.99999 * 3 2 1 36 36 H 1.09001 * 109.46934 * 30.17370 * 9 8 7 37 37 H 1.08998 * 109.47707 * 150.17752 * 9 8 7 38 38 H 0.97005 * 119.99778 * 359.97438 * 12 10 9 39 39 H 1.09004 * 109.47215 * 300.00323 * 13 12 10 40 40 H 1.09005 * 109.47372 * 59.99843 * 13 12 10 41 41 H 1.08993 * 109.50045 * 305.53331 * 16 14 13 42 42 H 1.09000 * 109.49216 * 65.63050 * 16 14 13 43 43 H 1.08993 * 109.46221 * 301.34785 * 17 16 14 44 44 H 1.08998 * 109.44834 * 181.38010 * 17 16 14 45 45 H 1.09006 * 109.49406 * 178.68168 * 18 17 16 46 46 H 1.08995 * 109.49955 * 58.58052 * 18 17 16 47 47 H 1.08993 * 109.58839 * 294.85098 * 19 18 17 48 48 H 1.09003 * 109.70270 * 174.49160 * 19 18 17 49 49 H 0.96993 * 120.00334 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 1.2305 5 7 1.7971 -0.3786 2.4765 6 7 2.3980 -1.2292 3.2350 7 7 3.0100 -2.0953 2.5052 8 7 2.8040 -1.8128 1.2633 9 6 3.3168 -2.5506 0.1063 10 6 4.6565 -1.9885 -0.2945 11 8 5.1354 -1.0624 0.3252 12 7 5.3223 -2.5149 -1.3414 13 6 6.6243 -1.9681 -1.7312 14 6 7.1600 -2.7387 -2.9395 15 1 7.2731 -3.7914 -2.6807 16 6 8.5159 -2.1608 -3.3572 17 6 8.9805 -2.8414 -4.6468 18 6 7.9722 -2.5634 -5.7641 19 6 6.6102 -3.1458 -5.3738 20 7 6.2229 -2.6057 -4.0634 21 6 5.0115 -1.9905 -3.8927 22 1 4.9065 -1.1963 -3.1683 23 6 3.9184 -2.3877 -4.6505 24 7 3.9573 -3.5215 -5.3179 25 14 2.3923 -1.3130 -4.7233 26 1 2.7495 0.0172 -5.2785 27 1 1.3750 -1.9561 -5.5933 28 1 1.8388 -1.1460 -3.3555 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 3.1300 1.4424 0.0005 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9564 0.8900 36 1 3.4278 -3.6032 0.3667 37 1 2.6187 -2.4536 -0.7252 38 1 4.9394 -3.2558 -1.8367 39 1 6.5130 -0.9156 -1.9921 40 1 7.3225 -2.0643 -0.8997 41 1 8.4178 -1.0886 -3.5266 42 1 9.2461 -2.3397 -2.5680 43 1 9.0546 -3.9165 -4.4837 44 1 9.9565 -2.4494 -4.9327 45 1 8.3156 -3.0288 -6.6880 46 1 7.8793 -1.4874 -5.9108 47 1 6.6804 -4.2319 -5.3151 48 1 5.8644 -2.8675 -6.1185 49 1 3.1935 -3.7992 -5.8472 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001690457686.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:45 Heat of formation + Delta-G solvation = 74.408207 kcal Electronic energy + Delta-G solvation = -31012.028772 eV Core-core repulsion = 27011.501555 eV Total energy + Delta-G solvation = -4000.527217 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.32159 -40.99417 -39.37839 -37.21808 -36.50773 -35.80362 -34.85750 -32.77122 -32.39421 -31.67432 -30.19909 -28.18555 -27.58736 -26.39192 -25.50622 -24.39509 -23.78625 -22.39876 -21.94391 -21.45328 -20.69176 -19.17192 -18.80458 -18.12421 -17.47787 -17.26716 -16.83087 -16.49347 -16.22655 -15.85276 -15.61715 -15.46901 -14.93650 -14.78801 -14.60215 -14.46231 -14.26931 -14.05143 -13.86725 -13.62222 -13.46868 -13.18879 -13.14996 -12.83557 -12.75039 -12.66756 -12.54579 -12.48660 -12.37633 -12.33468 -12.29056 -12.02454 -11.90597 -11.78690 -11.52774 -11.28431 -11.11988 -11.07435 -10.84882 -10.46628 -9.97731 -8.52816 -7.76511 -5.24974 0.07479 0.78887 1.09430 1.39498 1.46741 1.59186 1.60647 2.16446 2.55414 2.82175 3.11666 3.37796 3.51106 3.56496 3.63516 3.86394 3.95072 3.99146 3.99690 4.15777 4.22336 4.27617 4.33606 4.43476 4.54123 4.59910 4.65294 4.71206 4.73959 4.76446 4.81919 4.87199 4.89422 5.00340 5.07229 5.14966 5.20398 5.22802 5.25726 5.28446 5.34439 5.46626 5.51253 5.65896 5.78695 5.85726 6.47228 6.51246 7.10195 7.23282 7.45457 7.92499 8.48073 9.27584 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.013171 B = 0.004155 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2125.329468 B = 6736.460169 C = 8083.005209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.019 4.019 3 C -0.139 4.139 4 C 0.210 3.790 5 N -0.321 5.321 6 N -0.103 5.103 7 N -0.100 5.100 8 N -0.288 5.288 9 C 0.087 3.913 10 C 0.499 3.501 11 O -0.583 6.583 12 N -0.677 5.677 13 C 0.142 3.858 14 C 0.161 3.839 15 H 0.036 0.964 16 C -0.123 4.123 17 C -0.103 4.103 18 C -0.137 4.137 19 C 0.179 3.821 20 N -0.601 5.601 21 C -0.242 4.242 22 H 0.067 0.933 23 C -0.032 4.032 24 N -0.925 5.925 25 Si 0.932 3.068 26 H -0.297 1.297 27 H -0.304 1.304 28 H -0.248 1.248 29 H 0.062 0.938 30 H 0.068 0.932 31 H 0.093 0.907 32 H 0.099 0.901 33 H 0.039 0.961 34 H 0.094 0.906 35 H 0.069 0.931 36 H 0.173 0.827 37 H 0.166 0.834 38 H 0.420 0.580 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.052 0.948 42 H 0.079 0.921 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.061 0.939 46 H 0.044 0.956 47 H 0.002 0.998 48 H 0.049 0.951 49 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.528 1.129 3.025 3.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.041 4.041 3 C -0.197 4.197 4 C -0.068 4.068 5 N -0.170 5.170 6 N -0.097 5.097 7 N -0.086 5.086 8 N -0.088 5.088 9 C -0.037 4.037 10 C 0.283 3.717 11 O -0.464 6.464 12 N -0.327 5.327 13 C 0.018 3.982 14 C 0.055 3.945 15 H 0.054 0.946 16 C -0.163 4.163 17 C -0.141 4.141 18 C -0.176 4.176 19 C 0.054 3.946 20 N -0.325 5.325 21 C -0.373 4.373 22 H 0.085 0.915 23 C -0.228 4.228 24 N -0.570 5.570 25 Si 0.761 3.239 26 H -0.224 1.224 27 H -0.231 1.231 28 H -0.172 1.172 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.111 0.889 32 H 0.117 0.883 33 H 0.058 0.942 34 H 0.113 0.887 35 H 0.088 0.912 36 H 0.190 0.810 37 H 0.184 0.816 38 H 0.258 0.742 39 H 0.068 0.932 40 H 0.090 0.910 41 H 0.071 0.929 42 H 0.097 0.903 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.063 0.937 47 H 0.020 0.980 48 H 0.068 0.932 49 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -0.183 1.499 4.801 5.033 hybrid contribution -0.815 0.034 -1.620 1.814 sum -0.998 1.532 3.181 3.669 Atomic orbital electron populations 1.21845 0.90134 1.03310 1.04369 1.20076 0.98827 0.96494 0.88694 1.21794 1.00492 0.93170 1.04263 1.26546 0.94026 0.88159 0.98112 1.74844 1.21608 1.21365 0.99187 1.78505 1.07870 0.99878 1.23418 1.78751 1.19272 1.22322 0.88250 1.48029 1.33274 1.20752 1.06788 1.22374 0.95773 0.99513 0.86039 1.20479 0.86812 0.83503 0.80952 1.90751 1.69711 1.30708 1.55216 1.45854 1.20768 1.36667 1.29408 1.21279 0.83378 0.97588 0.95985 1.20864 0.90418 0.96396 0.86824 0.94602 1.21900 0.96460 0.99830 0.98110 1.21340 0.97966 1.00186 0.94567 1.22065 0.97183 1.00147 0.98199 1.20551 0.92855 0.93699 0.87539 1.44247 1.15609 1.68126 1.04550 1.19231 0.85887 1.11182 1.20965 0.91544 1.25564 0.99392 0.96517 1.01373 1.70121 1.30865 1.21255 1.34764 0.85892 0.80612 0.78295 0.79085 1.22429 1.23069 1.17183 0.91900 0.91247 0.88851 0.88330 0.94170 0.88718 0.91205 0.80950 0.81631 0.74161 0.93198 0.91045 0.92882 0.90265 0.92387 0.91115 0.92021 0.93718 0.98023 0.93238 0.94306 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 9.18 71.98 0.66 -1.87 16 2 C -0.02 -0.45 3.26 -11.54 -0.04 -0.49 16 3 C -0.14 -3.22 9.17 71.98 0.66 -2.56 16 4 C 0.21 6.18 6.64 138.14 0.92 7.10 16 5 N -0.32 -10.86 12.36 -50.45 -0.62 -11.48 16 6 N -0.10 -3.76 13.43 37.01 0.50 -3.26 16 7 N -0.10 -3.41 13.29 37.02 0.49 -2.92 16 8 N -0.29 -8.52 2.83 -341.97 -0.97 -9.49 16 9 C 0.09 2.05 6.56 85.64 0.56 2.61 16 10 C 0.50 15.23 7.90 87.66 0.69 15.92 16 11 O -0.58 -22.59 16.43 -3.03 -0.05 -22.64 16 12 N -0.68 -20.49 3.84 -463.06 -1.78 -22.26 16 13 C 0.14 4.49 4.43 86.38 0.38 4.88 16 14 C 0.16 5.26 3.01 44.97 0.14 5.39 16 15 H 0.04 1.19 8.14 -2.39 -0.02 1.17 16 16 C -0.12 -3.46 5.37 30.67 0.16 -3.29 16 17 C -0.10 -2.81 5.88 30.62 0.18 -2.63 16 18 C -0.14 -4.49 6.08 30.67 0.19 -4.30 16 19 C 0.18 7.38 5.27 86.36 0.46 7.84 16 20 N -0.60 -24.12 2.97 -675.22 -2.01 -26.12 16 21 C -0.24 -10.44 6.97 84.03 0.59 -9.86 16 22 H 0.07 2.88 5.85 -2.91 -0.02 2.86 16 23 C -0.03 -1.44 4.96 84.86 0.42 -1.02 16 24 N -0.92 -45.78 11.24 21.65 0.24 -45.54 16 25 Si 0.93 36.63 29.58 68.60 2.03 38.66 16 26 H -0.30 -12.33 7.11 99.48 0.71 -11.63 16 27 H -0.30 -12.65 7.11 99.48 0.71 -11.94 16 28 H -0.25 -8.23 7.11 99.48 0.71 -7.52 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.10 2.24 6.85 -2.39 -0.02 2.23 16 33 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 34 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.07 1.59 8.14 -2.38 -0.02 1.57 16 36 H 0.17 2.91 8.14 -2.39 -0.02 2.89 16 37 H 0.17 3.07 7.13 -2.39 -0.02 3.05 16 38 H 0.42 12.77 7.39 -92.70 -0.69 12.09 16 39 H 0.05 1.79 7.42 -2.38 -0.02 1.78 16 40 H 0.07 2.10 8.14 -2.38 -0.02 2.09 16 41 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 43 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 45 H 0.06 1.83 8.14 -2.38 -0.02 1.81 16 46 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 47 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 48 H 0.05 2.38 6.19 -2.39 -0.01 2.37 16 49 H 0.25 12.28 8.31 -92.71 -0.77 11.51 16 Total: -1.00 -62.50 391.41 4.07 -58.42 By element: Atomic # 1 Polarization: 28.64 SS G_CDS: 0.27 Total: 28.91 kcal Atomic # 6 Polarization: 11.75 SS G_CDS: 5.97 Total: 17.72 kcal Atomic # 7 Polarization: -116.93 SS G_CDS: -4.14 Total: -121.07 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 36.63 SS G_CDS: 2.03 Total: 38.66 kcal Total: -62.50 4.07 -58.42 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001690457686.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.832 kcal (2) G-P(sol) polarization free energy of solvation -62.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.424 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds