Wall clock time and date at job start Tue Mar 31 2020 19:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 C 1.50693 * 109.47246 * 120.00165 * 2 1 3 5 5 N 1.31071 * 126.66189 * 300.17294 * 4 2 1 6 6 N 1.28841 * 107.99241 * 180.24452 * 5 4 2 7 7 N 1.28742 * 109.39813 * 359.74459 * 6 5 4 8 8 N 1.29020 * 108.80736 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.43914 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46827 * 90.02684 * 9 8 7 11 11 O 1.21280 * 120.00058 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47062 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.78170 * 308.24051 * 15 14 13 17 17 C 1.55158 * 110.72145 * 184.99928 * 15 14 13 18 18 C 1.54909 * 101.61642 * 206.15534 * 17 15 14 19 19 N 1.47423 * 104.83351 * 36.99324 * 18 17 15 20 20 C 1.36936 * 125.64594 * 155.90840 * 19 18 17 21 21 H 1.08007 * 120.00033 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00281 * 359.97114 * 20 19 18 23 23 N 1.31616 * 120.00050 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47317 * 90.00005 * 24 22 20 26 26 H 1.48493 * 109.47218 * 210.00105 * 24 22 20 27 27 H 1.48503 * 109.47133 * 329.99859 * 24 22 20 28 28 C 1.47016 * 108.70440 * 335.86643 * 19 18 17 29 29 H 1.08995 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46745 * 299.99675 * 1 2 3 31 31 H 1.09002 * 109.46920 * 59.99682 * 1 2 3 32 32 H 1.08999 * 109.46745 * 240.00324 * 2 1 3 33 33 H 1.08999 * 109.47054 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47575 * 299.99917 * 3 2 1 35 35 H 1.08999 * 109.47138 * 60.00565 * 3 2 1 36 36 H 1.08998 * 109.46992 * 330.02373 * 9 8 7 37 37 H 1.09005 * 109.47036 * 210.02112 * 9 8 7 38 38 H 0.97002 * 120.00212 * 359.97438 * 12 10 9 39 39 H 1.09007 * 109.46821 * 60.00505 * 13 12 10 40 40 H 1.08996 * 109.47722 * 300.00172 * 13 12 10 41 41 H 1.08996 * 109.47404 * 60.00468 * 14 13 12 42 42 H 1.09005 * 109.47092 * 300.00001 * 14 13 12 43 43 H 1.09002 * 111.00366 * 88.06052 * 17 15 14 44 44 H 1.09002 * 111.00429 * 324.25114 * 17 15 14 45 45 H 1.09000 * 110.36449 * 155.82966 * 18 17 15 46 46 H 1.09002 * 110.36579 * 278.03887 * 18 17 15 47 47 H 0.96996 * 120.00056 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.88531 * 120.47268 * 28 19 18 49 49 H 1.08996 * 109.88671 * 241.49081 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7951 -0.3803 2.4764 6 7 2.4017 -1.2269 3.2349 7 7 3.0155 -2.0917 2.5050 8 7 2.8096 -1.8089 1.2631 9 6 3.3289 -2.5423 0.1060 10 6 2.3498 -3.6183 -0.2872 11 8 1.3200 -3.7591 0.3378 12 7 2.6191 -4.4249 -1.3329 13 6 1.6677 -5.4713 -1.7149 14 6 2.2105 -6.2379 -2.9226 15 6 1.2165 -7.3304 -3.3220 16 1 0.9505 -7.9445 -2.4616 17 6 1.7939 -8.2069 -4.4646 18 6 0.5016 -8.7202 -5.1474 19 7 -0.4365 -7.5849 -5.0817 20 6 -1.4971 -7.3764 -5.9223 21 1 -2.1285 -6.5101 -5.7905 22 6 -1.7609 -8.2784 -6.9440 23 7 -0.9918 -9.3343 -7.1044 24 14 -3.2074 -7.9936 -8.0911 25 1 -2.7642 -7.1854 -9.2554 26 1 -3.7279 -9.3009 -8.5654 27 1 -4.2801 -7.2679 -7.3643 28 6 -0.0452 -6.7141 -3.9637 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 4.2851 -2.9975 0.3637 37 1 3.4669 -1.8542 -0.7281 38 1 3.4429 -4.3125 -1.8325 39 1 0.7113 -5.0162 -1.9728 40 1 1.5295 -6.1590 -0.8806 41 1 3.1666 -6.6930 -2.6643 42 1 2.3489 -5.5504 -3.7571 43 1 2.3795 -9.0346 -4.0643 44 1 2.3887 -7.6079 -5.1541 45 1 0.7015 -8.9876 -6.1851 46 1 0.1012 -9.5773 -4.6059 47 1 -1.1759 -9.9644 -7.8185 48 1 0.1791 -5.7137 -4.3338 49 1 -0.8511 -6.6663 -3.2314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691912411.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:19 Heat of formation + Delta-G solvation = 94.692399 kcal Electronic energy + Delta-G solvation = -28811.308573 eV Core-core repulsion = 24811.660945 eV Total energy + Delta-G solvation = -3999.647629 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.47944 -40.25605 -37.96059 -36.59642 -35.87813 -35.41179 -33.22764 -31.83942 -31.16628 -29.68182 -28.84469 -27.65942 -26.61620 -24.86992 -24.74110 -23.67583 -22.43745 -21.49153 -20.88865 -20.17966 -19.50569 -18.27697 -18.17335 -16.94800 -16.62770 -16.44281 -16.05255 -15.62410 -15.41684 -15.00065 -14.68315 -14.27367 -14.20526 -13.71827 -13.69375 -13.61936 -13.11984 -12.64518 -12.63874 -12.48169 -12.39943 -12.10784 -12.04781 -11.82860 -11.80083 -11.66984 -11.64843 -11.63910 -11.25310 -11.19853 -10.97212 -10.80687 -10.51740 -10.26090 -10.21815 -10.07307 -9.99213 -9.80920 -9.53667 -9.48553 -8.68164 -6.86192 -5.68576 -3.10220 0.86885 1.44046 1.94504 2.01131 2.62682 3.37013 3.42373 3.44392 3.47207 3.69419 3.95782 4.00773 4.19901 4.46054 4.48744 4.60232 4.73036 4.75332 4.93805 5.09710 5.14624 5.18373 5.27367 5.37388 5.40741 5.42427 5.44409 5.46640 5.51453 5.62584 5.71114 5.74329 5.76183 5.85656 5.89163 5.93872 6.09302 6.14968 6.30629 6.54185 6.55754 6.69233 6.89185 6.92200 7.48630 7.59491 7.59988 7.82325 8.33392 8.35028 9.19301 9.80368 10.45249 11.35374 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002049 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.583059 B =13660.460414 C =14747.401398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.011 4.011 3 C -0.144 4.144 4 C 0.204 3.796 5 N -0.299 5.299 6 N -0.072 5.072 7 N -0.086 5.086 8 N -0.296 5.296 9 C 0.092 3.908 10 C 0.497 3.503 11 O -0.516 6.516 12 N -0.717 5.717 13 C 0.117 3.883 14 C -0.116 4.116 15 C -0.098 4.098 16 H 0.073 0.927 17 C -0.138 4.138 18 C 0.150 3.850 19 N -0.605 5.605 20 C -0.223 4.223 21 H 0.077 0.923 22 C -0.012 4.012 23 N -0.923 5.923 24 Si 0.914 3.086 25 H -0.289 1.289 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.140 3.860 29 H 0.063 0.937 30 H 0.071 0.929 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.057 0.943 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.144 0.856 37 H 0.140 0.860 38 H 0.404 0.596 39 H 0.076 0.924 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.072 0.928 43 H 0.057 0.943 44 H 0.059 0.941 45 H 0.106 0.894 46 H 0.011 0.989 47 H 0.252 0.748 48 H 0.021 0.979 49 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.975 17.125 10.427 24.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.033 4.033 3 C -0.202 4.202 4 C -0.074 4.074 5 N -0.148 5.148 6 N -0.066 5.066 7 N -0.072 5.072 8 N -0.097 5.097 9 C -0.034 4.034 10 C 0.279 3.721 11 O -0.391 6.391 12 N -0.369 5.369 13 C -0.005 4.005 14 C -0.154 4.154 15 C -0.118 4.118 16 H 0.091 0.909 17 C -0.177 4.177 18 C 0.026 3.974 19 N -0.331 5.331 20 C -0.351 4.351 21 H 0.095 0.905 22 C -0.207 4.207 23 N -0.572 5.572 24 Si 0.745 3.255 25 H -0.216 1.216 26 H -0.216 1.216 27 H -0.207 1.207 28 C 0.014 3.986 29 H 0.082 0.918 30 H 0.090 0.910 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.076 0.924 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.161 0.839 37 H 0.158 0.842 38 H 0.238 0.762 39 H 0.094 0.906 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.075 0.925 44 H 0.078 0.922 45 H 0.123 0.877 46 H 0.029 0.971 47 H 0.063 0.937 48 H 0.039 0.961 49 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 13.205 16.735 12.155 24.540 hybrid contribution -0.308 -0.120 -1.757 1.787 sum 12.897 16.615 10.398 23.463 Atomic orbital electron populations 1.21844 0.91545 1.03426 1.03540 1.19816 0.98047 0.96029 0.89405 1.21857 1.01131 0.93375 1.03847 1.26126 0.94491 0.88746 0.98050 1.74961 1.19622 1.21855 0.98331 1.78614 1.06679 0.98920 1.22372 1.78890 1.20339 1.20767 0.87165 1.47852 1.34872 1.20120 1.06825 1.21996 0.99227 0.95694 0.86529 1.20274 0.87445 0.83002 0.81414 1.90855 1.26028 1.70115 1.52087 1.45939 1.24685 1.34549 1.31755 1.21629 0.92379 0.88719 0.97797 1.21802 0.99259 0.97853 0.96482 1.22108 0.95443 0.95845 0.98391 0.90898 1.23041 0.99802 0.98197 0.96648 1.21926 0.84953 0.88652 1.01913 1.44512 1.32083 1.24495 1.32018 1.19083 1.03176 1.06566 1.06276 0.90550 1.24791 0.99521 0.97019 0.99415 1.69797 1.39440 1.13902 1.34019 0.86075 0.81726 0.76944 0.80787 1.21589 1.21628 1.20727 1.21369 0.93247 0.93745 0.90241 0.91796 0.91009 0.90715 0.89135 0.92410 0.90636 0.90897 0.83869 0.84241 0.76182 0.90552 0.91083 0.91427 0.90970 0.92454 0.92176 0.87658 0.97115 0.93737 0.96076 0.96334 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.18 37.16 0.34 -0.74 16 2 C -0.01 -0.07 3.26 -91.77 -0.30 -0.37 16 3 C -0.14 -0.71 9.18 37.16 0.34 -0.37 16 4 C 0.20 2.08 6.64 -155.43 -1.03 1.05 16 5 N -0.30 -3.95 12.36 32.70 0.40 -3.55 16 6 N -0.07 -1.06 13.43 60.35 0.81 -0.25 16 7 N -0.09 -1.13 13.29 60.35 0.80 -0.33 16 8 N -0.30 -2.94 2.83 -59.44 -0.17 -3.11 16 9 C 0.09 0.48 6.57 -5.19 -0.03 0.45 16 10 C 0.50 4.41 7.90 -10.99 -0.09 4.33 16 11 O -0.52 -7.47 16.43 5.56 0.09 -7.37 16 12 N -0.72 -5.07 5.56 -60.29 -0.33 -5.40 16 13 C 0.12 1.21 5.56 -4.04 -0.02 1.19 16 14 C -0.12 -1.22 4.73 -26.73 -0.13 -1.35 16 15 C -0.10 -1.51 2.93 -88.75 -0.26 -1.77 16 16 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 17 C -0.14 -2.39 6.53 -24.58 -0.16 -2.55 16 18 C 0.15 3.55 5.89 -2.53 -0.01 3.53 16 19 N -0.61 -15.20 3.39 -170.04 -0.58 -15.78 16 20 C -0.22 -6.15 10.27 -15.06 -0.15 -6.30 16 21 H 0.08 2.04 7.83 -52.48 -0.41 1.63 16 22 C -0.01 -0.34 5.49 -17.43 -0.10 -0.43 16 23 N -0.92 -26.61 10.09 55.49 0.56 -26.05 16 24 Si 0.91 21.84 29.55 -169.99 -5.02 16.82 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 27 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 28 C 0.14 2.77 6.24 -3.04 -0.02 2.75 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 32 H 0.09 0.39 6.84 -51.93 -0.36 0.03 16 33 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 34 H 0.07 0.25 8.14 -51.93 -0.42 -0.17 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 36 H 0.14 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.14 0.13 7.12 -51.93 -0.37 -0.24 16 38 H 0.40 1.35 8.47 -40.82 -0.35 1.00 16 39 H 0.08 0.94 7.69 -51.93 -0.40 0.54 16 40 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.07 0.75 7.93 -51.93 -0.41 0.34 16 43 H 0.06 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.06 1.01 8.05 -51.93 -0.42 0.59 16 45 H 0.11 2.81 5.88 -51.93 -0.31 2.50 16 46 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 47 H 0.25 7.04 8.31 -40.82 -0.34 6.70 16 48 H 0.02 0.41 7.68 -51.93 -0.40 0.01 16 49 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 LS Contribution 400.26 15.07 6.03 6.03 Total: -1.00 -37.19 400.26 -7.07 -44.26 By element: Atomic # 1 Polarization: 3.39 SS G_CDS: -8.05 Total: -4.65 kcal Atomic # 6 Polarization: 1.01 SS G_CDS: -1.62 Total: -0.61 kcal Atomic # 7 Polarization: -55.97 SS G_CDS: 1.50 Total: -54.47 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.37 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -37.19 -7.07 -44.26 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691912411.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.955 kcal (2) G-P(sol) polarization free energy of solvation -37.189 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.263 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds