Wall clock time and date at job start Tue Mar 31 2020 19:50:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.46938 * 2 1 4 4 C 1.50693 * 109.47246 * 120.00165 * 2 1 3 5 5 N 1.31071 * 126.66189 * 300.17294 * 4 2 1 6 6 N 1.28841 * 107.99241 * 180.24452 * 5 4 2 7 7 N 1.28742 * 109.39813 * 359.74459 * 6 5 4 8 8 N 1.29020 * 108.80736 * 0.02562 * 7 6 5 9 9 C 1.46501 * 126.43914 * 179.97438 * 8 7 6 10 10 C 1.50700 * 109.46827 * 90.02684 * 9 8 7 11 11 O 1.21280 * 120.00058 * 359.97438 * 10 9 8 12 12 N 1.34775 * 119.99856 * 180.02562 * 10 9 8 13 13 C 1.46497 * 120.00083 * 179.97438 * 12 10 9 14 14 C 1.53005 * 109.47062 * 180.02562 * 13 12 10 15 15 C 1.53000 * 109.46967 * 180.02562 * 14 13 12 16 16 H 1.08999 * 110.78170 * 308.24051 * 15 14 13 17 17 C 1.55158 * 110.72145 * 184.99928 * 15 14 13 18 18 C 1.54909 * 101.61642 * 206.15534 * 17 15 14 19 19 N 1.47423 * 104.83351 * 36.99324 * 18 17 15 20 20 C 1.36936 * 125.64594 * 155.90840 * 19 18 17 21 21 H 1.08007 * 120.00033 * 179.97438 * 20 19 18 22 22 C 1.38813 * 120.00281 * 359.97114 * 20 19 18 23 23 N 1.31616 * 120.00050 * 0.02562 * 22 20 19 24 24 Si 1.86798 * 119.99983 * 180.02562 * 22 20 19 25 25 H 1.48501 * 109.47317 * 90.00005 * 24 22 20 26 26 H 1.48493 * 109.47218 * 210.00105 * 24 22 20 27 27 H 1.48503 * 109.47133 * 329.99859 * 24 22 20 28 28 C 1.47016 * 108.70440 * 335.86643 * 19 18 17 29 29 H 1.08995 * 109.47100 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.46745 * 299.99675 * 1 2 3 31 31 H 1.09002 * 109.46920 * 59.99682 * 1 2 3 32 32 H 1.08999 * 109.46745 * 240.00324 * 2 1 3 33 33 H 1.08999 * 109.47054 * 179.97438 * 3 2 1 34 34 H 1.09002 * 109.47575 * 299.99917 * 3 2 1 35 35 H 1.08999 * 109.47138 * 60.00565 * 3 2 1 36 36 H 1.08998 * 109.46992 * 330.02373 * 9 8 7 37 37 H 1.09005 * 109.47036 * 210.02112 * 9 8 7 38 38 H 0.97002 * 120.00212 * 359.97438 * 12 10 9 39 39 H 1.09007 * 109.46821 * 60.00505 * 13 12 10 40 40 H 1.08996 * 109.47722 * 300.00172 * 13 12 10 41 41 H 1.08996 * 109.47404 * 60.00468 * 14 13 12 42 42 H 1.09005 * 109.47092 * 300.00001 * 14 13 12 43 43 H 1.09002 * 111.00366 * 88.06052 * 17 15 14 44 44 H 1.09002 * 111.00429 * 324.25114 * 17 15 14 45 45 H 1.09000 * 110.36449 * 155.82966 * 18 17 15 46 46 H 1.09002 * 110.36579 * 278.03887 * 18 17 15 47 47 H 0.96996 * 120.00056 * 180.02562 * 23 22 20 48 48 H 1.09000 * 109.88531 * 120.47268 * 28 19 18 49 49 H 1.08996 * 109.88671 * 241.49081 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2304 5 7 1.7951 -0.3803 2.4764 6 7 2.4017 -1.2269 3.2349 7 7 3.0155 -2.0917 2.5050 8 7 2.8096 -1.8089 1.2631 9 6 3.3289 -2.5423 0.1060 10 6 2.3498 -3.6183 -0.2872 11 8 1.3200 -3.7591 0.3378 12 7 2.6191 -4.4249 -1.3329 13 6 1.6677 -5.4713 -1.7149 14 6 2.2105 -6.2379 -2.9226 15 6 1.2165 -7.3304 -3.3220 16 1 0.9505 -7.9445 -2.4616 17 6 1.7939 -8.2069 -4.4646 18 6 0.5016 -8.7202 -5.1474 19 7 -0.4365 -7.5849 -5.0817 20 6 -1.4971 -7.3764 -5.9223 21 1 -2.1285 -6.5101 -5.7905 22 6 -1.7609 -8.2784 -6.9440 23 7 -0.9918 -9.3343 -7.1044 24 14 -3.2074 -7.9936 -8.0911 25 1 -2.7642 -7.1854 -9.2554 26 1 -3.7279 -9.3009 -8.5654 27 1 -4.2801 -7.2679 -7.3643 28 6 -0.0452 -6.7141 -3.9637 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 3.1300 1.4425 0.0005 34 1 1.6767 1.9564 -0.8900 35 1 1.6768 1.9563 0.8900 36 1 4.2851 -2.9975 0.3637 37 1 3.4669 -1.8542 -0.7281 38 1 3.4429 -4.3125 -1.8325 39 1 0.7113 -5.0162 -1.9728 40 1 1.5295 -6.1590 -0.8806 41 1 3.1666 -6.6930 -2.6643 42 1 2.3489 -5.5504 -3.7571 43 1 2.3795 -9.0346 -4.0643 44 1 2.3887 -7.6079 -5.1541 45 1 0.7015 -8.9876 -6.1851 46 1 0.1012 -9.5773 -4.6059 47 1 -1.1759 -9.9644 -7.8185 48 1 0.1791 -5.7137 -4.3338 49 1 -0.8511 -6.6663 -3.2314 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691912411.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:18 Heat of formation + Delta-G solvation = 67.339649 kcal Electronic energy + Delta-G solvation = -28812.494678 eV Core-core repulsion = 24811.660945 eV Total energy + Delta-G solvation = -4000.833733 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -45.30304 -41.00907 -39.42521 -37.21930 -36.72936 -36.31175 -34.82225 -32.79058 -32.43978 -30.96931 -30.02264 -28.12951 -28.01917 -26.52881 -25.50039 -24.62548 -23.51433 -22.24033 -21.88164 -21.56725 -20.77350 -19.02378 -18.93977 -18.78489 -17.45221 -17.16643 -16.95449 -16.68128 -16.50131 -16.27437 -15.63541 -15.55230 -15.12567 -14.95089 -14.44616 -14.26247 -14.21153 -13.88665 -13.72023 -13.53130 -13.35617 -13.21837 -13.11381 -13.07373 -12.80705 -12.70778 -12.68956 -12.51005 -12.31784 -12.29288 -12.23416 -12.01922 -11.90946 -11.78379 -11.59078 -11.43132 -11.29051 -11.17480 -10.94279 -10.73924 -10.24259 -8.87572 -7.77994 -5.22138 0.07967 0.84125 1.12353 1.31025 1.45484 1.47254 1.55905 1.99022 2.49083 2.86725 3.14507 3.31029 3.42348 3.60960 3.74596 3.76507 3.91046 3.94798 4.00049 4.04243 4.18056 4.18791 4.30948 4.35014 4.36896 4.63418 4.64062 4.71963 4.75032 4.75850 4.81520 4.89660 4.89856 4.94129 5.02558 5.11760 5.13838 5.18295 5.26195 5.27459 5.32593 5.35359 5.44623 5.52974 5.69870 5.84258 6.32702 6.35107 7.03962 7.11592 7.47490 7.80094 8.43355 9.23624 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.017178 B = 0.002049 C = 0.001898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1629.583059 B =13660.460414 C =14747.401398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.011 4.011 3 C -0.139 4.139 4 C 0.208 3.792 5 N -0.331 5.331 6 N -0.109 5.109 7 N -0.103 5.103 8 N -0.292 5.292 9 C 0.087 3.913 10 C 0.497 3.503 11 O -0.580 6.580 12 N -0.696 5.696 13 C 0.124 3.876 14 C -0.099 4.099 15 C -0.086 4.086 16 H 0.073 0.927 17 C -0.121 4.121 18 C 0.147 3.853 19 N -0.629 5.629 20 C -0.240 4.240 21 H 0.077 0.923 22 C -0.068 4.068 23 N -0.949 5.949 24 Si 0.979 3.021 25 H -0.281 1.281 26 H -0.294 1.294 27 H -0.273 1.273 28 C 0.134 3.866 29 H 0.036 0.964 30 H 0.056 0.944 31 H 0.099 0.901 32 H 0.124 0.876 33 H 0.068 0.932 34 H 0.098 0.902 35 H 0.054 0.946 36 H 0.180 0.820 37 H 0.194 0.806 38 H 0.427 0.573 39 H 0.052 0.948 40 H 0.057 0.943 41 H 0.101 0.899 42 H 0.083 0.917 43 H 0.084 0.916 44 H 0.072 0.928 45 H 0.071 0.929 46 H -0.021 1.021 47 H 0.247 0.753 48 H 0.032 0.968 49 H 0.007 0.993 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.438 18.864 9.194 26.657 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.032 4.032 3 C -0.197 4.197 4 C -0.070 4.070 5 N -0.179 5.179 6 N -0.102 5.102 7 N -0.088 5.088 8 N -0.093 5.093 9 C -0.036 4.036 10 C 0.281 3.719 11 O -0.459 6.459 12 N -0.349 5.349 13 C 0.000 4.000 14 C -0.137 4.137 15 C -0.105 4.105 16 H 0.091 0.909 17 C -0.159 4.159 18 C 0.022 3.978 19 N -0.355 5.355 20 C -0.369 4.369 21 H 0.095 0.905 22 C -0.261 4.261 23 N -0.599 5.599 24 Si 0.807 3.193 25 H -0.208 1.208 26 H -0.221 1.221 27 H -0.198 1.198 28 C 0.009 3.991 29 H 0.056 0.944 30 H 0.075 0.925 31 H 0.118 0.882 32 H 0.142 0.858 33 H 0.087 0.913 34 H 0.117 0.883 35 H 0.073 0.927 36 H 0.197 0.803 37 H 0.211 0.789 38 H 0.266 0.734 39 H 0.070 0.930 40 H 0.075 0.925 41 H 0.119 0.881 42 H 0.102 0.898 43 H 0.102 0.898 44 H 0.091 0.909 45 H 0.089 0.911 46 H -0.003 1.003 47 H 0.056 0.944 48 H 0.050 0.950 49 H 0.025 0.975 Dipole moment (debyes) X Y Z Total from point charges 15.732 18.495 10.908 26.618 hybrid contribution -1.122 -0.696 -1.410 1.931 sum 14.610 17.799 9.499 24.909 Atomic orbital electron populations 1.21831 0.92557 1.01768 1.04076 1.20110 0.97116 0.97133 0.88860 1.21850 1.01779 0.92017 1.04095 1.26767 0.93422 0.88573 0.98210 1.74862 1.20554 1.22626 0.99889 1.78566 1.08036 0.99956 1.23688 1.78763 1.20684 1.20765 0.88637 1.48140 1.34301 1.20004 1.06862 1.22572 0.98785 0.95677 0.86599 1.20865 0.87047 0.83298 0.80696 1.90851 1.28945 1.71929 1.54204 1.45647 1.24838 1.33118 1.31342 1.21318 0.92267 0.89129 0.97283 1.21635 0.98864 0.96480 0.96674 1.22028 0.94329 0.96874 0.97302 0.90876 1.22869 0.96786 0.99366 0.96877 1.21772 0.87794 0.87979 1.00259 1.44867 1.31936 1.25633 1.33111 1.19450 1.04089 1.06559 1.06801 0.90466 1.25628 1.02254 0.97062 1.01137 1.70060 1.40829 1.14592 1.34403 0.85071 0.78829 0.76544 0.78856 1.20793 1.22098 1.19836 1.21598 0.95040 0.93774 0.88718 0.94447 0.92472 0.88230 0.85822 0.91327 0.88342 0.92701 0.80318 0.78937 0.73398 0.92950 0.92451 0.88080 0.89822 0.89778 0.90927 0.91088 1.00303 0.94355 0.94999 0.97544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.18 71.98 0.66 -1.35 16 2 C -0.01 -0.11 3.26 -11.54 -0.04 -0.15 16 3 C -0.14 -0.99 9.18 71.98 0.66 -0.33 16 4 C 0.21 3.99 6.64 138.13 0.92 4.91 16 5 N -0.33 -8.88 12.36 -50.45 -0.62 -9.51 16 6 N -0.11 -3.27 13.43 37.01 0.50 -2.78 16 7 N -0.10 -2.64 13.29 37.02 0.49 -2.15 16 8 N -0.29 -5.23 2.83 -341.97 -0.97 -6.20 16 9 C 0.09 0.55 6.57 85.63 0.56 1.11 16 10 C 0.50 7.44 7.90 87.66 0.69 8.13 16 11 O -0.58 -16.47 16.43 -3.03 -0.05 -16.52 16 12 N -0.70 -7.14 5.56 -463.06 -2.57 -9.71 16 13 C 0.12 2.25 5.56 86.38 0.48 2.73 16 14 C -0.10 -1.68 4.73 30.60 0.14 -1.53 16 15 C -0.09 -2.45 2.93 -9.58 -0.03 -2.48 16 16 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 17 C -0.12 -3.92 6.53 31.99 0.21 -3.71 16 18 C 0.15 7.07 5.89 86.86 0.51 7.58 16 19 N -0.63 -32.08 3.39 -691.88 -2.35 -34.43 16 20 C -0.24 -13.47 10.27 84.03 0.86 -12.61 16 21 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 22 C -0.07 -3.88 5.49 84.86 0.47 -3.41 16 23 N -0.95 -56.37 10.09 21.65 0.22 -56.16 16 24 Si 0.98 45.46 29.55 68.60 2.03 47.49 16 25 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 26 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 27 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 28 C 0.13 5.21 6.24 86.75 0.54 5.75 16 29 H 0.04 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.12 0.48 6.84 -2.39 -0.02 0.47 16 33 H 0.07 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.10 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.18 -0.08 8.14 -2.39 -0.02 -0.10 16 37 H 0.19 -0.88 7.12 -2.38 -0.02 -0.89 16 38 H 0.43 0.44 8.47 -92.71 -0.79 -0.35 16 39 H 0.05 1.23 7.69 -2.38 -0.02 1.21 16 40 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.08 1.32 7.93 -2.38 -0.02 1.30 16 43 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 44 H 0.07 2.20 8.05 -2.39 -0.02 2.19 16 45 H 0.07 3.91 5.88 -2.39 -0.01 3.90 16 46 H -0.02 -1.11 8.14 -2.39 -0.02 -1.13 16 47 H 0.25 14.21 8.31 -92.71 -0.77 13.44 16 48 H 0.03 1.18 7.68 -2.39 -0.02 1.16 16 49 H 0.01 0.27 8.14 -2.39 -0.02 0.25 16 Total: -1.00 -89.30 400.26 3.48 -85.82 By element: Atomic # 1 Polarization: -0.66 SS G_CDS: 0.17 Total: -0.49 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: 6.64 Total: 4.63 kcal Atomic # 7 Polarization: -115.62 SS G_CDS: -5.31 Total: -120.93 kcal Atomic # 8 Polarization: -16.47 SS G_CDS: -0.05 Total: -16.52 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -89.30 3.48 -85.82 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691912411.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.157 kcal (2) G-P(sol) polarization free energy of solvation -89.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.817 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds