Wall clock time and date at job start Tue Mar 31 2020 19:50:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47038 * 2 1 4 4 C 1.50692 * 109.47404 * 120.00249 * 2 1 3 5 5 N 1.31078 * 126.65869 * 300.17024 * 4 2 1 6 6 N 1.28841 * 107.99082 * 180.24344 * 5 4 2 7 7 N 1.28742 * 109.39726 * 359.75600 * 6 5 4 8 8 N 1.29024 * 108.80750 * 359.97438 * 7 6 5 9 9 C 1.46502 * 126.43523 * 179.97438 * 8 7 6 10 10 C 1.50704 * 109.46579 * 90.02908 * 9 8 7 11 11 O 1.21272 * 120.00480 * 359.97438 * 10 9 8 12 12 N 1.34778 * 119.99651 * 179.97438 * 10 9 8 13 13 C 1.46492 * 120.00195 * 179.97438 * 12 10 9 14 14 C 1.52999 * 109.47375 * 180.02562 * 13 12 10 15 15 C 1.53007 * 109.47237 * 180.02562 * 14 13 12 16 16 H 1.09001 * 110.88236 * 57.42899 * 15 14 13 17 17 C 1.55156 * 111.03634 * 181.33036 * 15 14 13 18 18 C 1.54333 * 103.01719 * 153.39453 * 17 15 14 19 19 N 1.47023 * 107.26879 * 338.14792 * 18 17 15 20 20 C 1.36939 * 125.64945 * 178.84833 * 19 18 17 21 21 H 1.07997 * 119.99728 * 179.41145 * 20 19 18 22 22 C 1.38815 * 119.99845 * 359.69059 * 20 19 18 23 23 N 1.31619 * 119.99884 * 359.72042 * 22 20 19 24 24 Si 1.86798 * 119.99660 * 179.72678 * 22 20 19 25 25 H 1.48490 * 109.47339 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47239 * 119.99875 * 24 22 20 27 27 H 1.48504 * 109.46636 * 239.99434 * 24 22 20 28 28 C 1.47419 * 108.70109 * 358.57834 * 19 18 17 29 29 H 1.08993 * 109.47345 * 299.99897 * 1 2 3 30 30 H 1.09002 * 109.47184 * 60.00445 * 1 2 3 31 31 H 1.09006 * 109.47053 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.47181 * 240.00326 * 2 1 3 33 33 H 1.09002 * 109.46770 * 299.99808 * 3 2 1 34 34 H 1.08993 * 109.46969 * 59.99873 * 3 2 1 35 35 H 1.09000 * 109.46980 * 180.02562 * 3 2 1 36 36 H 1.08998 * 109.47372 * 330.03152 * 9 8 7 37 37 H 1.08998 * 109.46790 * 210.02876 * 9 8 7 38 38 H 0.97005 * 119.99623 * 359.97438 * 12 10 9 39 39 H 1.09008 * 109.47127 * 60.00555 * 13 12 10 40 40 H 1.08995 * 109.47620 * 300.00601 * 13 12 10 41 41 H 1.08998 * 109.46946 * 60.00511 * 14 13 12 42 42 H 1.08997 * 109.47396 * 300.00075 * 14 13 12 43 43 H 1.08995 * 110.71944 * 271.95603 * 17 15 14 44 44 H 1.08998 * 110.71971 * 35.05898 * 17 15 14 45 45 H 1.08997 * 109.99574 * 218.66556 * 18 17 15 46 46 H 1.09001 * 109.77592 * 97.49804 * 18 17 15 47 47 H 0.97000 * 119.99517 * 180.02562 * 23 22 20 48 48 H 1.09000 * 110.36612 * 143.20177 * 28 19 18 49 49 H 1.08999 * 110.37105 * 265.52387 * 28 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7104 1.2303 5 7 1.7950 -0.3802 2.4764 6 7 2.4016 -1.2268 3.2349 7 7 3.0155 -2.0916 2.5050 8 7 2.8089 -1.8093 1.2631 9 6 3.3280 -2.5428 0.1061 10 6 2.3493 -3.6195 -0.2863 11 8 1.3200 -3.7606 0.3391 12 7 2.6181 -4.4257 -1.3324 13 6 1.6671 -5.4728 -1.7136 14 6 2.2092 -6.2388 -2.9220 15 6 1.2156 -7.3319 -3.3205 16 1 0.2364 -6.9060 -3.5393 17 6 1.7458 -8.1545 -4.5245 18 6 1.0529 -9.5216 -4.3436 19 7 0.6666 -9.6314 -2.9293 20 6 0.0050 -10.6878 -2.3624 21 1 -0.2258 -10.6770 -1.3074 22 6 -0.3640 -11.7751 -3.1425 23 7 -0.0827 -11.7882 -4.4283 24 14 -1.2598 -13.2195 -2.3676 25 1 -1.4546 -12.9614 -0.9183 26 1 -2.5816 -13.3912 -3.0222 27 1 -0.4548 -14.4546 -2.5462 28 6 1.1153 -8.4188 -2.2213 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.8934 -0.5138 -0.8901 33 1 1.6766 1.9563 -0.8900 34 1 1.6766 1.9563 0.8899 35 1 3.1300 1.4425 -0.0005 36 1 4.2846 -2.9975 0.3634 37 1 3.4654 -1.8550 -0.7283 38 1 3.4414 -4.3126 -1.8329 39 1 0.7101 -5.0184 -1.9705 40 1 1.5304 -6.1607 -0.8793 41 1 3.1659 -6.6932 -2.6648 42 1 2.3462 -5.5511 -3.7566 43 1 1.4519 -7.6922 -5.4668 44 1 2.8291 -8.2623 -4.4707 45 1 1.7414 -10.3257 -4.6034 46 1 0.1658 -9.5719 -4.9751 47 1 -0.3409 -12.5478 -4.9735 48 1 0.3850 -8.1283 -1.4661 49 1 2.0901 -8.5858 -1.7630 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001691912412.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:23 Heat of formation + Delta-G solvation = 93.820804 kcal Electronic energy + Delta-G solvation = -28738.431670 eV Core-core repulsion = 24738.746246 eV Total energy + Delta-G solvation = -3999.685424 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 336.201 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -44.48133 -40.25459 -37.95410 -36.62496 -35.88195 -35.41150 -33.19704 -31.84632 -31.16802 -29.67517 -28.85692 -27.70373 -26.60008 -24.86512 -24.75009 -23.68277 -22.47444 -21.49539 -20.90554 -20.05562 -19.62322 -18.28861 -18.18056 -16.92410 -16.61835 -16.43097 -16.07636 -15.61557 -15.34069 -15.01400 -14.63872 -14.31539 -14.21993 -13.75085 -13.69649 -13.64745 -13.17106 -12.68966 -12.58435 -12.49186 -12.34849 -12.14375 -12.09150 -11.89742 -11.84178 -11.69506 -11.67483 -11.62393 -11.26618 -11.21601 -10.90438 -10.81109 -10.49776 -10.25528 -10.17703 -10.02726 -9.91891 -9.83568 -9.66096 -9.48203 -8.61689 -6.84205 -5.72593 -3.05867 0.86789 1.43882 1.94785 2.00976 2.62624 3.39164 3.45045 3.45221 3.47451 3.68492 3.94263 3.99498 4.19963 4.44841 4.49147 4.56846 4.70459 4.73272 4.94144 5.08381 5.13563 5.14024 5.23855 5.33392 5.38179 5.41460 5.42643 5.50432 5.55354 5.61743 5.67886 5.72334 5.74667 5.81196 5.87930 5.93739 6.08726 6.11791 6.30989 6.48809 6.52655 6.66722 6.89537 6.92281 7.55323 7.60036 7.60690 7.81440 8.25142 8.35090 9.21563 9.81857 10.47504 11.39260 Molecular weight = 336.20amu Principal moments of inertia in cm(-1) A = 0.020042 B = 0.001923 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1396.738965 B =14559.368701 C =15084.763424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.010 4.010 3 C -0.144 4.144 4 C 0.202 3.798 5 N -0.299 5.299 6 N -0.072 5.072 7 N -0.084 5.084 8 N -0.296 5.296 9 C 0.092 3.908 10 C 0.496 3.504 11 O -0.515 6.515 12 N -0.717 5.717 13 C 0.117 3.883 14 C -0.115 4.115 15 C -0.101 4.101 16 H 0.076 0.924 17 C -0.138 4.138 18 C 0.176 3.824 19 N -0.607 5.607 20 C -0.227 4.227 21 H 0.078 0.922 22 C -0.010 4.010 23 N -0.923 5.923 24 Si 0.911 3.089 25 H -0.280 1.280 26 H -0.290 1.290 27 H -0.291 1.291 28 C 0.139 3.861 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.074 0.926 34 H 0.072 0.928 35 H 0.057 0.943 36 H 0.144 0.856 37 H 0.139 0.861 38 H 0.403 0.597 39 H 0.072 0.928 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.041 0.959 46 H 0.046 0.954 47 H 0.251 0.749 48 H 0.037 0.963 49 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.072 26.592 0.788 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.032 4.032 3 C -0.202 4.202 4 C -0.076 4.076 5 N -0.148 5.148 6 N -0.065 5.065 7 N -0.070 5.070 8 N -0.096 5.096 9 C -0.034 4.034 10 C 0.278 3.722 11 O -0.390 6.390 12 N -0.370 5.370 13 C -0.005 4.005 14 C -0.154 4.154 15 C -0.121 4.121 16 H 0.094 0.906 17 C -0.176 4.176 18 C 0.052 3.948 19 N -0.333 5.333 20 C -0.355 4.355 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.571 5.571 24 Si 0.742 3.258 25 H -0.205 1.205 26 H -0.217 1.217 27 H -0.218 1.218 28 C 0.013 3.987 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.108 0.892 33 H 0.093 0.907 34 H 0.091 0.909 35 H 0.076 0.924 36 H 0.162 0.838 37 H 0.157 0.843 38 H 0.238 0.762 39 H 0.090 0.910 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.077 0.923 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.064 0.936 47 H 0.062 0.938 48 H 0.055 0.945 49 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges 9.330 26.083 2.636 27.827 hybrid contribution 0.042 -1.060 -0.922 1.405 sum 9.372 25.023 1.714 26.776 Atomic orbital electron populations 1.21841 0.91612 1.03385 1.03505 1.19800 0.97982 0.96010 0.89417 1.21858 1.01165 0.93381 1.03817 1.26106 0.94669 0.88801 0.98046 1.74960 1.19615 1.21873 0.98318 1.78625 1.06660 0.98909 1.22342 1.78915 1.20231 1.20685 0.87138 1.47854 1.34858 1.20080 1.06850 1.21996 0.99321 0.95641 0.86491 1.20272 0.87457 0.83045 0.81396 1.90858 1.26086 1.70113 1.51913 1.45941 1.24753 1.34518 1.31755 1.21618 0.91900 0.88585 0.98438 1.21750 0.99923 0.97585 0.96117 1.22274 0.97882 0.94224 0.97707 0.90551 1.22900 0.99634 0.98613 0.96473 1.21142 0.97279 0.90568 0.85850 1.44496 1.66847 1.16932 1.05039 1.19122 1.28644 0.94435 0.93331 0.90422 1.24809 1.01368 0.98584 0.95848 1.69978 1.51769 1.30860 1.04465 0.86042 0.79077 0.82419 0.78250 1.20481 1.21736 1.21763 1.21611 0.96760 0.86889 0.93463 0.90976 0.90807 0.91815 0.89202 0.90702 0.90870 0.92388 0.83830 0.84304 0.76232 0.91001 0.90481 0.91122 0.91491 0.92308 0.92587 0.94118 0.93591 0.93846 0.94467 0.96551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 9.18 37.16 0.34 -0.63 16 2 C -0.01 -0.06 3.26 -91.77 -0.30 -0.36 16 3 C -0.14 -0.63 9.18 37.16 0.34 -0.29 16 4 C 0.20 2.00 6.64 -155.43 -1.03 0.97 16 5 N -0.30 -3.92 12.36 32.70 0.40 -3.52 16 6 N -0.07 -1.06 13.43 60.35 0.81 -0.25 16 7 N -0.08 -1.12 13.29 60.35 0.80 -0.32 16 8 N -0.30 -2.92 2.83 -59.44 -0.17 -3.09 16 9 C 0.09 0.47 6.57 -5.19 -0.03 0.44 16 10 C 0.50 4.38 7.90 -10.98 -0.09 4.29 16 11 O -0.52 -7.47 16.43 5.56 0.09 -7.38 16 12 N -0.72 -4.95 5.56 -60.30 -0.33 -5.28 16 13 C 0.12 1.20 5.52 -4.05 -0.02 1.18 16 14 C -0.12 -1.18 4.85 -26.73 -0.13 -1.31 16 15 C -0.10 -1.54 3.07 -88.47 -0.27 -1.81 16 16 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 17 C -0.14 -2.34 6.42 -24.89 -0.16 -2.50 16 18 C 0.18 4.18 5.38 -3.06 -0.02 4.17 16 19 N -0.61 -15.39 3.39 -170.07 -0.58 -15.96 16 20 C -0.23 -6.37 10.28 -15.06 -0.15 -6.53 16 21 H 0.08 2.13 7.83 -52.49 -0.41 1.71 16 22 C -0.01 -0.29 5.49 -17.43 -0.10 -0.38 16 23 N -0.92 -27.14 10.31 55.49 0.57 -26.57 16 24 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 28 C 0.14 2.75 5.89 -2.53 -0.01 2.73 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 30 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.09 0.32 6.84 -51.93 -0.36 -0.04 16 33 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.23 8.14 -51.93 -0.42 -0.20 16 36 H 0.14 0.36 8.14 -51.93 -0.42 -0.06 16 37 H 0.14 0.07 7.12 -51.93 -0.37 -0.30 16 38 H 0.40 1.23 8.47 -40.82 -0.35 0.88 16 39 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 40 H 0.08 0.99 7.46 -51.93 -0.39 0.60 16 41 H 0.07 0.70 8.10 -51.93 -0.42 0.28 16 42 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 43 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.06 0.88 8.04 -51.93 -0.42 0.46 16 45 H 0.04 1.07 7.53 -51.93 -0.39 0.68 16 46 H 0.05 1.21 7.36 -51.93 -0.38 0.83 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 48 H 0.04 0.74 8.07 -51.93 -0.42 0.32 16 49 H 0.02 0.33 8.00 -51.93 -0.42 -0.09 16 LS Contribution 400.78 15.07 6.04 6.04 Total: -1.00 -38.12 400.78 -7.12 -45.24 By element: Atomic # 1 Polarization: 1.96 SS G_CDS: -8.10 Total: -6.14 kcal Atomic # 6 Polarization: 1.59 SS G_CDS: -1.64 Total: -0.05 kcal Atomic # 7 Polarization: -56.50 SS G_CDS: 1.51 Total: -54.99 kcal Atomic # 8 Polarization: -7.47 SS G_CDS: 0.09 Total: -7.38 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -38.12 -7.12 -45.24 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691912412.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 139.063 kcal (2) G-P(sol) polarization free energy of solvation -38.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.940 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.242 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds